Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:25:47 (1431479): wrapper (7.7.26015): starting
07:25:47 (1431479): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 07:25:47] Arguments: --nthreads 8
[2025-11-21 07:25:47] Threads: 8
[2025-11-21 07:25:47] Checking for CVMFS
[2025-11-21 07:25:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:25:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:25:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:25:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:25:49] 2.11.3.0 2562703 21363 188184 153133 3 219 25568818 45568000 20989 130560 0 158595861 99.816 80314366 19758 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-21 07:25:49] CVMFS is ok
[2025-11-21 07:25:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:25:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:25:49] Further information can be found at the LHC@home message board.
[2025-11-21 07:25:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:25:49] Checking for apptainer binary...
[2025-11-21 07:25:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:25:49] Running /usr/bin/apptainer --version
[2025-11-21 07:25:49] apptainer version 1.4.1-1.el9
[2025-11-21 07:25:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:25:49] wns0015.triumf.lcg
[2025-11-21 07:25:49] apptainer works
[2025-11-21 07:25:49] Set ATHENA_PROC_NUMBER=8
[2025-11-21 07:25:49] Set ATHENA_CORE_NUMBER=8
[2025-11-21 07:25:49] Starting ATLAS job with PandaID=6894278633
[2025-11-21 07:25:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 07:33:19]  *** The last 200 lines of the pilot log: ***
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | ..............................
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . Timing measurements:
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . get job = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . initial setup = 3 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . payload setup = 15 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . stage-in = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . payload execution = 203 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . stage-out = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . log creation = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | ..............................
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894278633/pilotlog.txt
[2025-11-21 07:33:19] 2025-11-21 15:32:42,003 | INFO     | PID=1435195 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 07:33:19] 2025-11-21 15:32:42,003 | INFO     | .. there are 33 such processes running
[2025-11-21 07:33:19] 2025-11-21 15:32:42,102 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 07:33:19] - Log from pilotlog.txt -
[2025-11-21 07:33:19] 2025-11-21 15:32:41,973 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:33:19] 2025-11-21 15:32:41,973 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:33:19] 2025-11-21 15:32:41,973 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 07:33:19] 2025-11-21 15:32:41,973 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 07:33:19] 2025-11-21 15:32:41,974 | WARNING  | wrong length of table data, x=[1763738837.0, 1763738898.0, 1763738959.0, 1763739020.0], y=[1476.0, 610360.0, 879723.0, 822929.0] (must be same and length>=4)
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | ..............................
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . Timing measurements:
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . get job = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . initial setup = 3 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . payload setup = 15 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . stage-in = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . payload execution = 203 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . stage-out = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . log creation = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | ..............................
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894278633/pilotlog.txt
[2025-11-21 07:33:19] 2025-11-21 15:32:42,003 | INFO     | PID=1435195 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 07:33:19] 2025-11-21 15:32:42,003 | INFO     | .. there are 33 such processes running
[2025-11-21 07:33:19] 2025-11-21 15:32:42,103 | WARNING  | 
[2025-11-21 07:33:19] [begin log extracts]
[2025-11-21 07:33:19] - Log from pilotlog.txt -
[2025-11-21 07:33:19] 2025-11-21 15:32:41,973 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:33:19] 2025-11-21 15:32:41,973 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:33:19] 2025-11-21 15:32:41,973 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 07:33:19] 2025-11-21 15:32:41,973 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 07:33:19] 2025-11-21 15:32:41,974 | WARNING  | wrong length of table data, x=[1763738837.0, 1763738898.0, 1763738959.0, 1763739020.0], y=[1476.0, 610360.0, 879723.0, 822929.0] (must be same and length>=4)
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | ..............................
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . Timing measurements:
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . get job = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . initial setup = 3 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . payload setup = 15 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,975 | INFO     | . stage-in = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . payload execution = 203 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . stage-out = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | . log creation = 0 s
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | ..............................
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:33:19] 2025-11-21 15:32:41,976 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894278633/pilotlog.txt
[2025-11-21 07:33:19] 2025-11-21 15:32:42,003 | INFO     | PID=1435195 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 07:33:19] 2025-11-21 15:32:42,003 | INFO     | .. there are 33 such processes running
[2025-11-21 07:33:19] [end log extracts]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,103 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 07:33:19] 2025-11-21 15:32:42,103 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 07:33:19] 2025-11-21 15:32:42,270 | INFO     | 
[2025-11-21 07:33:19] 2025-11-21 15:32:42,271 | INFO     | job summary report
[2025-11-21 07:33:19] 2025-11-21 15:32:42,271 | INFO     | --------------------------------------------------
[2025-11-21 07:33:19] 2025-11-21 15:32:42,271 | INFO     | PanDA job id: 6894278633
[2025-11-21 07:33:19] 2025-11-21 15:32:42,271 | INFO     | task id: 47533967
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 07:30:21,973 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | pilot state: failed 
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | transexitcode: 65
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | exeerrorcode: 65
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | exitcode: 65
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | cpuconsumptiontime: 53 s
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | nevents: 0
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | neventsw: 0
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | pid: 1441990
[2025-11-21 07:33:19] 2025-11-21 15:32:42,272 | INFO     | pgrp: 1441990
[2025-11-21 07:33:19] 2025-11-21 15:32:42,273 | INFO     | corecount: 8
[2025-11-21 07:33:19] 2025-11-21 15:32:42,273 | INFO     | event service: False
[2025-11-21 07:33:19] 2025-11-21 15:32:42,273 | INFO     | sizes: {0: 2298803, 1: 2298831, 12: 2298831, 13: 2299121, 23: 2299177, 224: 2324753, 226: 2329043, 228: 2329071, 356: 2329237}
[2025-11-21 07:33:19] 2025-11-21 15:32:42,273 | INFO     | --------------------------------------------------
[2025-11-21 07:33:19] 2025-11-21 15:32:42,273 | INFO     | 
[2025-11-21 07:33:19] 2025-11-21 15:32:42,273 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 07:33:19] 2025-11-21 15:32:42,378 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,379 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,379 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,379 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,380 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,380 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,380 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,380 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,380 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 07:33:19] 2025-11-21 15:32:42,381 | INFO     | job 6894278633 has completed (purged errors)
[2025-11-21 07:33:19] 2025-11-21 15:32:42,382 | INFO     | overall cleanup function is called
[2025-11-21 07:33:19] 2025-11-21 15:32:43,389 | INFO     | --- collectZombieJob: --- 10, [1441990]
[2025-11-21 07:33:19] 2025-11-21 15:32:43,389 | INFO     | zombie collector waiting for pid 1441990
[2025-11-21 07:33:19] 2025-11-21 15:32:43,389 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 07:33:19] 2025-11-21 15:32:43,389 | INFO     | collected zombie processes
[2025-11-21 07:33:19] 2025-11-21 15:32:43,390 | INFO     | will attempt to kill all subprocesses of pid=1441990
[2025-11-21 07:33:19] 2025-11-21 15:32:43,654 | INFO     | process IDs to be killed: [1441990] (in reverse order)
[2025-11-21 07:33:19] 2025-11-21 15:32:43,911 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 07:33:19] 2025-11-21 15:32:43,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 07:33:19] 2025-11-21 15:32:43,920 | INFO     | did not find any defunct processes belonging to 1441990
[2025-11-21 07:33:19] 2025-11-21 15:32:43,927 | INFO     | did not find any defunct processes belonging to 1441990
[2025-11-21 07:33:19] 2025-11-21 15:32:43,928 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 07:33:19] 2025-11-21 15:32:43,928 | INFO     | ready for new job
[2025-11-21 07:33:19] 2025-11-21 15:32:43,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 07:33:19] 2025-11-21 15:32:43,930 | INFO     | ***************************************
[2025-11-21 07:33:19] 2025-11-21 15:32:43,930 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 07:33:19] 2025-11-21 15:32:43,930 | INFO     | ***************************************
[2025-11-21 07:33:19] 2025-11-21 15:32:43,930 | INFO     | 
[2025-11-21 07:33:19] 2025-11-21 15:32:43,932 | INFO     | architecture information:
[2025-11-21 07:33:19] 2025-11-21 15:32:43,933 | INFO     | executing command: cat /etc/os-release
[2025-11-21 07:33:19] 2025-11-21 15:32:43,947 | INFO     | cat /etc/os-release:
[2025-11-21 07:33:19] NAME="CentOS Linux"
[2025-11-21 07:33:19] VERSION="7 (Core)"
[2025-11-21 07:33:19] ID="centos"
[2025-11-21 07:33:19] ID_LIKE="rhel fedora"
[2025-11-21 07:33:19] VERSION_ID="7"
[2025-11-21 07:33:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 07:33:19] ANSI_COLOR="0;31"
[2025-11-21 07:33:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 07:33:19] HOME_URL="https://www.centos.org/"
[2025-11-21 07:33:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 07:33:19] 
[2025-11-21 07:33:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 07:33:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 07:33:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 07:33:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 07:33:19] 
[2025-11-21 07:33:19] 2025-11-21 15:32:43,948 | INFO     | ***************************************
[2025-11-21 07:33:19] 2025-11-21 15:32:44,452 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 07:33:19] 2025-11-21 15:32:44,520 | INFO     | sufficient remaining disk space (1106622021632 B)
[2025-11-21 07:33:19] 2025-11-21 15:32:44,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 07:33:19] 2025-11-21 15:32:44,520 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 07:33:19] 2025-11-21 15:32:44,523 | INFO     | update_server=False
[2025-11-21 07:33:19] 2025-11-21 15:32:44,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 07:33:19] 2025-11-21 15:32:44,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 07:33:19] 2025-11-21 15:32:44,651 | INFO     | all payload control threads have been joined
[2025-11-21 07:33:19] 2025-11-21 15:32:44,664 | INFO     | all job control threads have been joined
[2025-11-21 07:33:19] 2025-11-21 15:32:44,936 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:33:19] 2025-11-21 15:32:44,936 | INFO     | aborting loop
[2025-11-21 07:33:19] 2025-11-21 15:32:45,403 | INFO     | all data control threads have been joined
[2025-11-21 07:33:19] 2025-11-21 15:32:45,532 | INFO     | [job] retrieve thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:45,574 | INFO     | [payload] validate_post thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:45,654 | INFO     | [payload] control thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:45,670 | INFO     | [job] control thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:45,856 | INFO     | [data] copytool_in thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:45,942 | INFO     | [job] job monitor thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:46,412 | INFO     | [data] control thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:46,533 | INFO     | [data] copytool_out thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:46,626 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:46,627 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:46,654 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 07:33:19] 2025-11-21 15:32:46,683 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:46,741 | INFO     | [job] validate thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:46,762 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:46,918 | INFO     | [payload] failed_post thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:47,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:33:19] 2025-11-21 15:32:48,239 | INFO     | [job] queue monitor thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:32:50,661 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 07:33:19] 2025-11-21 15:33:14,390 | INFO     | PID=1435195 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 07:33:19] 2025-11-21 15:33:14,390 | INFO     | .. there are 33 such processes running
[2025-11-21 07:33:19] 2025-11-21 15:33:14,390 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 07:33:19] 2025-11-21 15:33:14,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 07:33:19] 2025-11-21 15:33:14,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 07:33:19] 2025-11-21 15:33:14,408 | INFO     | [monitor] cgroup control has ended
[2025-11-21 07:33:19] 2025-11-21 15:33:14,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140597268854592)>', '<ExcThread(monitor, started 140596878497536)>']
[2025-11-21 07:33:19] 2025-11-21 15:33:15,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 07:33:19] 2025-11-21 15:33:15,396 | INFO     | [monitor] control thread has ended
[2025-11-21 07:33:19] 2025-11-21 15:33:19,557 | INFO     | all workflow threads have been joined
[2025-11-21 07:33:19] 2025-11-21 15:33:19,557 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 07:33:19] 2025-11-21 15:33:19,558 | INFO     | traces error code: 0
[2025-11-21 07:33:19] 2025-11-21 15:33:19,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 07:33:19] 2025-11-21 15:33:19,685 [wrapper] ==== pilot stdout END ====
[2025-11-21 07:33:19] 2025-11-21 15:33:19,687 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 07:33:19] 2025-11-21 15:33:19,688 [wrapper] pilotpid: 1435195
[2025-11-21 07:33:19] 2025-11-21 15:33:19,690 [wrapper] Pilot exit status: 0
[2025-11-21 07:33:19] 2025-11-21 15:33:19,700 [wrapper] pandaids: 6894278633
[2025-11-21 07:33:19] 2025-11-21 15:33:19,746 [wrapper] cleanup supervisor_pilot 1435201 1435196
[2025-11-21 07:33:19] 2025-11-21 15:33:19,749 [wrapper] Test setup, not cleaning
[2025-11-21 07:33:19] 2025-11-21 15:33:19,754 [wrapper] apfmon messages muted
[2025-11-21 07:33:19] 2025-11-21 15:33:19,766 [wrapper] ==== wrapper stdout END ====
[2025-11-21 07:33:19] 2025-11-21 15:33:19,788 [wrapper] ==== wrapper stderr END ====
[2025-11-21 07:33:19]  *** Error codes and diagnostics ***
[2025-11-21 07:33:19]     "exeErrorCode": 65,
[2025-11-21 07:33:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 07:33:19]     "pilotErrorCode": 1305,
[2025-11-21 07:33:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 07:33:19]  *** Listing of results directory ***
[2025-11-21 07:33:19] total 402084
[2025-11-21 07:33:19] -rwx------. 1 boinc boinc     36292 Nov 21 00:27 runpilot2-wrapper.sh
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc    576529 Nov 21 00:27 pilot3.tar.gz
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc      5112 Nov 21 00:27 queuedata.json
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc       100 Nov 21 07:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 07:33:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 07:25 run_atlas
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc       105 Nov 21 07:25 job.xml
[2025-11-21 07:33:19] -rw-r--r--. 2 boinc boinc 407485891 Nov 21 07:25 EVNT.47493127._002324.pool.root.1
[2025-11-21 07:33:19] -rw-r--r--. 2 boinc boinc     15847 Nov 21 07:25 start_atlas.sh
[2025-11-21 07:33:19] drwxrwx--x. 2 boinc boinc      4096 Nov 21 07:25 shared
[2025-11-21 07:33:19] -rw-r--r--. 2 boinc boinc    590098 Nov 21 07:25 input.tar.gz
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc      6445 Nov 21 07:25 init_data.xml
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc         0 Nov 21 07:25 boinc_lockfile
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc      2785 Nov 21 07:25 pandaJob.out
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc    989798 Nov 21 07:26 agis_schedconf.cvmfs.json
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc   1526164 Nov 21 07:26 agis_ddmendpoints.agis.ALL.json
[2025-11-21 07:33:19] drwx------. 5 boinc boinc      4096 Nov 21 07:26 pilot3
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc       524 Nov 21 07:29 boinc_task_state.xml
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc       999 Nov 21 07:30 memory_monitor_summary.json
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc     50198 Nov 21 07:30 log.47533967._002953.job.log.tgz.1
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc        95 Nov 21 07:32 pilot_heartbeat.json
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc     10335 Nov 21 07:32 heartbeat.json
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc        23 Nov 21 07:33 wrapper_checkpoint.txt
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc      8192 Nov 21 07:33 boinc_mmap_file
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc      4823 Nov 21 07:33 pilotlog.txt
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc    115204 Nov 21 07:33 log.47533967._002953.job.log.1
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc       186 Nov 21 07:33 output.list
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc       620 Nov 21 07:33 runtime_log
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc    184320 Nov 21 07:33 result.tar.gz
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc      8634 Nov 21 07:33 runtime_log.err
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc       647 Nov 21 07:33 lpkMDm9ebg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNDJKDm8DdQpn.diag
[2025-11-21 07:33:19] -rw-r--r--. 1 boinc boinc     22767 Nov 21 07:33 stderr.txt
[2025-11-21 07:33:19] No HITS result produced
[2025-11-21 07:33:19]  *** Contents of shared directory: ***
[2025-11-21 07:33:19] total 398716
[2025-11-21 07:33:19] -rw-r--r--. 2 boinc boinc 407485891 Nov 21 07:25 ATLAS.root_0
[2025-11-21 07:33:19] -rw-r--r--. 2 boinc boinc     15847 Nov 21 07:25 start_atlas.sh
[2025-11-21 07:33:19] -rw-r--r--. 2 boinc boinc    590098 Nov 21 07:25 input.tar.gz
[2025-11-21 07:33:19] -rw-------. 1 boinc boinc    184320 Nov 21 07:33 result.tar.gz
07:33:21 (1431479): run_atlas exited; CPU time 58.716290
07:33:21 (1431479): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN