Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:19:09 (950164): wrapper (7.7.26015): starting
10:19:09 (950164): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 10:19:09] Arguments: --nthreads 8
[2025-11-21 10:19:09] Threads: 8
[2025-11-21 10:19:09] Checking for CVMFS
[2025-11-21 10:19:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 10:19:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 10:19:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 10:19:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 10:19:11] 2.13.2.0 2325231 23601 187088 153133 1 169 26592830 40960000 18601 16776704 0 163015652 99.739 117945369 49871 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 10:19:11] CVMFS is ok
[2025-11-21 10:19:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 10:19:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 10:19:11] Further information can be found at the LHC@home message board.
[2025-11-21 10:19:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 10:19:11] Checking for apptainer binary...
[2025-11-21 10:19:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 10:19:11] Running /usr/bin/apptainer --version
[2025-11-21 10:19:11] apptainer version 1.4.4-1.el9
[2025-11-21 10:19:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 10:19:11] c-208-37.aglt2.org
[2025-11-21 10:19:11] apptainer works
[2025-11-21 10:19:12] Set ATHENA_PROC_NUMBER=8
[2025-11-21 10:19:12] Set ATHENA_CORE_NUMBER=8
[2025-11-21 10:19:12] Starting ATLAS job with PandaID=6893879632
[2025-11-21 10:19:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:05:09]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:05:09] 2025-11-21 23:04:02,570 | INFO     | time since job start (27831s) is within the limit (172800.0s)
[2025-11-21 18:05:09] 2025-11-21 23:04:04,068 | INFO     | monitor loop #1733: job 0:6893879632 is in state 'finished'
[2025-11-21 18:05:09] 2025-11-21 23:04:04,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:05:09] 2025-11-21 23:04:04,585 | INFO     | time since job start (27833s) is within the limit (172800.0s)
[2025-11-21 18:05:09] 2025-11-21 23:04:06,573 | INFO     | monitor loop #1734: job 0:6893879632 is in state 'finished'
[2025-11-21 18:05:09] 2025-11-21 23:04:06,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:05:09] 2025-11-21 23:04:06,591 | INFO     | time since job start (27835s) is within the limit (172800.0s)
[2025-11-21 18:05:09] 2025-11-21 23:04:07,714 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 18:05:09] 2025-11-21 23:04:07,727 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3785.2650078125007
[2025-11-21 18:05:09] 2025-11-21 23:04:07,803 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893879632/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 18:05:09] 2025-11-21 23:04:07,803 | INFO     | extracted standard info from prmon json
[2025-11-21 18:05:09] 2025-11-21 23:04:07,803 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 18:05:09] 2025-11-21 23:04:07,804 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 18:05:09] 2025-11-21 23:04:07,827 | INFO     | fitting pss+swap vs Time
[2025-11-21 18:05:09] 2025-11-21 23:04:07,830 | INFO     | sum of square deviations: 29019857403.773125
[2025-11-21 18:05:09] 2025-11-21 23:04:07,836 | INFO     | sum of deviations: 138179799734.3474
[2025-11-21 18:05:09] 2025-11-21 23:04:07,836 | INFO     | mean x: 1763752355.438326
[2025-11-21 18:05:09] 2025-11-21 23:04:07,836 | INFO     | mean y: 2827699.405286344
[2025-11-21 18:05:09] 2025-11-21 23:04:07,836 | INFO     | intersect: -8395385422.888137
[2025-11-21 18:05:09] 2025-11-21 23:04:07,836 | INFO     | chi2: 15.528467409189727
[2025-11-21 18:05:09] 2025-11-21 23:04:07,837 | INFO     | sum of square deviations: 28071811411.82175
[2025-11-21 18:05:09] 2025-11-21 23:04:07,871 | INFO     | sum of deviations: 281667704760.931
[2025-11-21 18:05:09] 2025-11-21 23:04:07,871 | INFO     | mean x: 1763752202.948775
[2025-11-21 18:05:09] 2025-11-21 23:04:07,871 | INFO     | mean y: 2850766.692650334
[2025-11-21 18:05:09] 2025-11-21 23:04:07,871 | INFO     | intersect: -17694334052.752438
[2025-11-21 18:05:09] 2025-11-21 23:04:07,871 | INFO     | chi2: 12.428966154142296
[2025-11-21 18:05:09] 2025-11-21 23:04:07,871 | INFO     | current chi2=12.428966154142296 (change=19.960123387406213 %)
[2025-11-21 18:05:09] 2025-11-21 23:04:07,871 | INFO     | right removable region: 448
[2025-11-21 18:05:09] 2025-11-21 23:04:07,872 | INFO     | sum of square deviations: 28071551551.82173
[2025-11-21 18:05:09] 2025-11-21 23:04:07,895 | INFO     | sum of deviations: -41089430628.40759
[2025-11-21 18:05:09] 2025-11-21 23:04:07,896 | INFO     | mean x: 1763752507.948775
[2025-11-21 18:05:09] 2025-11-21 23:04:07,896 | INFO     | mean y: 2856516.89532294
[2025-11-21 18:05:09] 2025-11-21 23:04:07,896 | INFO     | intersect: 2584530215.5241394
[2025-11-21 18:05:09] 2025-11-21 23:04:07,896 | INFO     | chi2: 11.307402517881156
[2025-11-21 18:05:09] 2025-11-21 23:04:07,896 | INFO     | current chi2=11.307402517881156 (change=27.182752683053252 %)
[2025-11-21 18:05:09] 2025-11-21 23:04:07,896 | INFO     | sum of square deviations: 27144129812.27032
[2025-11-21 18:05:09] 2025-11-21 23:04:07,910 | INFO     | sum of deviations: -158358267497.1081
[2025-11-21 18:05:09] 2025-11-21 23:04:07,910 | INFO     | mean x: 1763752660.4594595
[2025-11-21 18:05:09] 2025-11-21 23:04:07,910 | INFO     | mean y: 2875762.132882883
[2025-11-21 18:05:09] 2025-11-21 23:04:07,910 | INFO     | intersect: 10292570717.744144
[2025-11-21 18:05:09] 2025-11-21 23:04:07,911 | INFO     | chi2: 9.320759091775384
[2025-11-21 18:05:09] 2025-11-21 23:04:07,911 | INFO     | current chi2=9.320759091775384 (change=17.569405731901373 %)
[2025-11-21 18:05:09] 2025-11-21 23:04:07,911 | INFO     | left removable region: 20
[2025-11-21 18:05:09] 2025-11-21 23:04:07,911 | INFO     | sum of square deviations: 24314430202.915855
[2025-11-21 18:05:09] 2025-11-21 23:04:07,914 | INFO     | sum of deviations: -9849022372.691708
[2025-11-21 18:05:09] 2025-11-21 23:04:07,914 | INFO     | mean x: 1763752782.4859812
[2025-11-21 18:05:09] 2025-11-21 23:04:07,938 | INFO     | mean y: 2909999.801401869
[2025-11-21 18:05:09] 2025-11-21 23:04:07,939 | INFO     | intersect: 717351607.9176583
[2025-11-21 18:05:09] 2025-11-21 23:04:07,939 | INFO     | chi2: 5.337789475461228
[2025-11-21 18:05:09] 2025-11-21 23:04:07,939 | INFO     | current memory leak: -0.41 B/s (using 428 data points, chi2=5.34)
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | could have reported an average CPU frequency of 3780 MHz (19 samples)
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | ..............................
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | . Timing measurements:
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | . get job = 0 s
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | . initial setup = 5 s
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | . payload setup = 40 s
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | . stage-in = 0 s
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | . payload execution = 27690 s
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | . stage-out = 6 s
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | . log creation = 2 s
[2025-11-21 18:05:09] 2025-11-21 23:04:07,940 | INFO     | ..............................
[2025-11-21 18:05:09] 2025-11-21 23:04:08,441 | INFO     | 
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | job summary report
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | --------------------------------------------------
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | PanDA job id: 6893879632
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | task id: 47523449
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | errors: (none)
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | pilot state: finished 
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | transexitcode: 0
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | exeerrorcode: 0
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | exeerrordiag: 
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | exitcode: 0
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | exitmsg: OK
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | cpuconsumptiontime: 133919 s
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | nevents: 1000
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | neventsw: 0
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | pid: 968265
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | pgrp: 968265
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | corecount: 8
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | event service: False
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | sizes: {0: 2298585, 1: 2298784, 11: 2298784, 22: 2298812, 28: 2299102, 33: 2299130, 27734: 2337136, 27741: 2346130, 27743: 2346186, 27777: 2346432}
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | --------------------------------------------------
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | 
[2025-11-21 18:05:09] 2025-11-21 23:04:08,442 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,532 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,533 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,533 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,533 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:05:09] 2025-11-21 23:04:08,533 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,533 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:05:09] 2025-11-21 23:04:08,533 | INFO     | job 6893879632 has completed (purged errors)
[2025-11-21 18:05:09] 2025-11-21 23:04:08,533 | INFO     | overall cleanup function is called
[2025-11-21 18:05:09] 2025-11-21 23:04:09,577 | INFO     | --- collectZombieJob: --- 10, [968265]
[2025-11-21 18:05:09] 2025-11-21 23:04:09,578 | INFO     | zombie collector waiting for pid 968265
[2025-11-21 18:05:09] 2025-11-21 23:04:09,578 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:05:09] 2025-11-21 23:04:09,578 | INFO     | collected zombie processes
[2025-11-21 18:05:09] 2025-11-21 23:04:09,578 | INFO     | will attempt to kill all subprocesses of pid=968265
[2025-11-21 18:05:09] 2025-11-21 23:04:12,225 | INFO     | process IDs to be killed: [968265] (in reverse order)
[2025-11-21 18:05:09] 2025-11-21 23:04:12,873 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:05:09] 2025-11-21 23:04:12,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:05:09] 2025-11-21 23:04:13,257 | INFO     | did not find any defunct processes belonging to 968265
[2025-11-21 18:05:09] 2025-11-21 23:04:13,561 | INFO     | did not find any defunct processes belonging to 968265
[2025-11-21 18:05:09] 2025-11-21 23:04:13,579 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:05:09] 2025-11-21 23:04:13,579 | INFO     | ready for new job
[2025-11-21 18:05:09] 2025-11-21 23:04:13,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:05:09] 2025-11-21 23:04:13,581 | INFO     | ***************************************
[2025-11-21 18:05:09] 2025-11-21 23:04:13,581 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:05:09] 2025-11-21 23:04:13,581 | INFO     | ***************************************
[2025-11-21 18:05:09] 2025-11-21 23:04:13,581 | INFO     | 
[2025-11-21 18:05:09] 2025-11-21 23:04:13,599 | INFO     | architecture information:
[2025-11-21 18:05:09] 2025-11-21 23:04:13,621 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:05:09] 2025-11-21 23:04:13,746 | INFO     | cat /etc/os-release:
[2025-11-21 18:05:09] NAME="CentOS Linux"
[2025-11-21 18:05:09] VERSION="7 (Core)"
[2025-11-21 18:05:09] ID="centos"
[2025-11-21 18:05:09] ID_LIKE="rhel fedora"
[2025-11-21 18:05:09] VERSION_ID="7"
[2025-11-21 18:05:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:05:09] ANSI_COLOR="0;31"
[2025-11-21 18:05:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:05:09] HOME_URL="https://www.centos.org/"
[2025-11-21 18:05:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:05:09] 
[2025-11-21 18:05:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:05:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:05:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:05:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:05:09] 
[2025-11-21 18:05:09] 2025-11-21 23:04:13,746 | INFO     | ***************************************
[2025-11-21 18:05:09] 2025-11-21 23:04:14,250 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-21 18:05:09] 2025-11-21 23:04:14,316 | INFO     | sufficient remaining disk space (160476168192 B)
[2025-11-21 18:05:09] 2025-11-21 23:04:14,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:05:09] 2025-11-21 23:04:14,316 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:05:09] 2025-11-21 23:04:14,316 | INFO     | update_server=False
[2025-11-21 18:05:09] 2025-11-21 23:04:14,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:05:09] 2025-11-21 23:04:14,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:05:09] 2025-11-21 23:04:14,479 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 18:05:09] 2025-11-21 23:04:14,480 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 18:05:09] 2025-11-21 23:04:14,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:05:09] 2025-11-21 23:04:14,480 | INFO     | will abort loop
[2025-11-21 18:05:09] 2025-11-21 23:04:14,694 | INFO     | all data control threads have been joined
[2025-11-21 18:05:09] 2025-11-21 23:04:14,884 | INFO     | all job control threads have been joined
[2025-11-21 18:05:09] 2025-11-21 23:04:15,289 | INFO     | all payload control threads have been joined
[2025-11-21 18:05:09] 2025-11-21 23:04:15,322 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:15,322 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:15,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:05:09] 2025-11-21 23:04:15,487 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:15,487 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:15,701 | INFO     | [data] control thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:15,802 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:15,890 | INFO     | [job] control thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:15,988 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:16,080 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:16,084 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:16,295 | INFO     | [payload] control thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:16,352 | INFO     | [job] validate thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:16,431 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:16,499 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:05:09] 2025-11-21 23:04:16,504 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:17,460 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:20,532 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:05:09] 2025-11-21 23:04:44,636 | INFO     | PID=954708 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 18:05:09] 2025-11-21 23:04:44,636 | INFO     | .. there are 38 such processes running
[2025-11-21 18:05:09] 2025-11-21 23:04:44,637 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:05:09] 2025-11-21 23:04:44,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:05:09] 2025-11-21 23:04:44,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:05:09] 2025-11-21 23:04:59,969 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:05:09] 2025-11-21 23:05:01,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140205139150656)>', '<ExcThread(monitor, started 140204350359296)>']
[2025-11-21 18:05:09] 2025-11-21 23:05:01,779 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:05:09] 2025-11-21 23:05:01,780 | INFO     | [monitor] control thread has ended
[2025-11-21 18:05:09] 2025-11-21 23:05:06,548 | INFO     | all workflow threads have been joined
[2025-11-21 18:05:09] 2025-11-21 23:05:06,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:05:09] 2025-11-21 23:05:06,549 | INFO     | traces error code: 0
[2025-11-21 18:05:09] 2025-11-21 23:05:06,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:05:09] 2025-11-21 23:05:06,601 [wrapper] supervise_pilot (15 min periods counter: 32)
[2025-11-21 18:05:09] 2025-11-21 23:05:07,595 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:05:09] 2025-11-21 23:05:07,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:05:09] 2025-11-21 23:05:07,673 [wrapper] pilotpid: 954708
[2025-11-21 18:05:09] 2025-11-21 23:05:07,730 [wrapper] Pilot exit status: 0
[2025-11-21 18:05:09] 2025-11-21 23:05:07,878 [wrapper] pandaids: 6893879632
[2025-11-21 18:05:09] 2025-11-21 23:05:08,579 [wrapper] cleanup supervisor_pilot 3437779 954709
[2025-11-21 18:05:09] 2025-11-21 23:05:08,597 [wrapper] Test setup, not cleaning
[2025-11-21 18:05:09] 2025-11-21 23:05:08,614 [wrapper] apfmon messages muted
[2025-11-21 18:05:09] 2025-11-21 23:05:08,640 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:05:09] 2025-11-21 23:05:08,658 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:05:09]  *** Error codes and diagnostics ***
[2025-11-21 18:05:09]     "exeErrorCode": 0,
[2025-11-21 18:05:09]     "exeErrorDiag": "",
[2025-11-21 18:05:09]     "pilotErrorCode": 0,
[2025-11-21 18:05:09]     "pilotErrorDiag": "",
[2025-11-21 18:05:09]  *** Listing of results directory ***
[2025-11-21 18:05:09] total 1303896
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 14:10 pilot3.tar.gz
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 14:15 queuedata.json
[2025-11-21 18:05:09] -rwx------. 1 boincer umatlas     36292 Nov 20 14:16 runpilot2-wrapper.sh
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas       100 Nov 21 10:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:05:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 10:19 run_atlas
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas       105 Nov 21 10:19 job.xml
[2025-11-21 18:05:09] -rw-r--r--. 2 boincer umatlas 410296557 Nov 21 10:19 EVNT.47493127._000823.pool.root.1
[2025-11-21 18:05:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 10:19 start_atlas.sh
[2025-11-21 18:05:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 10:19 shared
[2025-11-21 18:05:09] -rw-r--r--. 2 boincer umatlas    590104 Nov 21 10:19 input.tar.gz
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas         0 Nov 21 10:19 boinc_lockfile
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 10:19 pandaJob.out
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas        57 Nov 21 10:19 setup.sh.local
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas    989798 Nov 21 10:20 agis_schedconf.cvmfs.json
[2025-11-21 18:05:09] drwx------. 5 boincer umatlas      4096 Nov 21 10:20 pilot3
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas       532 Nov 21 17:48 boinc_task_state.xml
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas 910325793 Nov 21 18:02 HITS.47523449._008224.pool.root.1
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas      1074 Nov 21 18:03 memory_monitor_summary.json
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas   1526164 Nov 21 18:03 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas   1724549 Nov 21 18:03 log.47523449._008224.job.log.tgz.1
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas      8631 Nov 21 18:04 heartbeat.json
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas      7176 Nov 21 18:04 init_data.xml
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas        95 Nov 21 18:04 pilot_heartbeat.json
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 18:05 boinc_mmap_file
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas        29 Nov 21 18:05 wrapper_checkpoint.txt
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas      5010 Nov 21 18:05 pilotlog.txt
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas   3595346 Nov 21 18:05 log.47523449._008224.job.log.1
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas       353 Nov 21 18:05 output.list
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas       620 Nov 21 18:05 runtime_log
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas   5335040 Nov 21 18:05 result.tar.gz
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 18:05 runtime_log.err
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas       666 Nov 21 18:05 G78LDmxJPg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhQIKDmZXcOJo.diag
[2025-11-21 18:05:09] -rw-r--r--. 1 boincer umatlas     21279 Nov 21 18:05 stderr.txt
[2025-11-21 18:05:09] HITS file was successfully produced:
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas 910325793 Nov 21 18:02 shared/HITS.pool.root.1
[2025-11-21 18:05:09]  *** Contents of shared directory: ***
[2025-11-21 18:05:09] total 1295492
[2025-11-21 18:05:09] -rw-r--r--. 2 boincer umatlas 410296557 Nov 21 10:19 ATLAS.root_0
[2025-11-21 18:05:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 10:19 start_atlas.sh
[2025-11-21 18:05:09] -rw-r--r--. 2 boincer umatlas    590104 Nov 21 10:19 input.tar.gz
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas 910325793 Nov 21 18:02 HITS.pool.root.1
[2025-11-21 18:05:09] -rw-------. 1 boincer umatlas   5335040 Nov 21 18:05 result.tar.gz
18:05:10 (950164): run_atlas exited; CPU time 134404.746587
18:05:10 (950164): called boinc_finish(0)

</stderr_txt>
]]>

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