Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:49:31 (2628591): wrapper (7.7.26015): starting
09:49:31 (2628591): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 09:49:31] Arguments: --nthreads 3
[2025-11-24 09:49:31] Threads: 3
[2025-11-24 09:49:31] Checking for CVMFS
[2025-11-24 09:49:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 09:49:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 09:49:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 09:49:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 09:49:32] 2.9.2.0 1559605 7982 88532 153239 2 81 36571561 36864001 0 130560 0 2931932 99.913 448552 6707 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 09:49:32] CVMFS is ok
[2025-11-24 09:49:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 09:49:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 09:49:32] Further information can be found at the LHC@home message board.
[2025-11-24 09:49:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 09:49:32] Checking for apptainer binary...
[2025-11-24 09:49:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 09:49:32] Running /usr/bin/apptainer --version
[2025-11-24 09:49:32] apptainer version 1.4.1-1.1
[2025-11-24 09:49:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 09:49:32] atlasA223
[2025-11-24 09:49:32] apptainer works
[2025-11-24 09:49:32] Set ATHENA_PROC_NUMBER=3
[2025-11-24 09:49:32] Set ATHENA_CORE_NUMBER=3
[2025-11-24 09:49:32] Starting ATLAS job with PandaID=6893880793
[2025-11-24 09:49:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 18:02:16]  *** The last 200 lines of the pilot log: ***
[2025-11-24 18:02:16] 2025-11-24 17:01:15,770 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 18:02:16] 2025-11-24 17:01:15,770 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 18:02:16] 2025-11-24 17:01:15,770 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 18:02:16] 2025-11-24 17:01:15,770 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 18:02:16] 2025-11-24 17:01:15,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 18:02:16] 2025-11-24 17:01:15,770 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 18:02:16] 2025-11-24 17:01:15,771 | INFO     | job 6893880793 has completed (purged errors)
[2025-11-24 18:02:16] 2025-11-24 17:01:15,771 | INFO     | overall cleanup function is called
[2025-11-24 18:02:16] 2025-11-24 17:01:15,908 | INFO     | PID=2632308 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 18:02:16] 2025-11-24 17:01:16,779 | INFO     | --- collectZombieJob: --- 10, [2638752]
[2025-11-24 18:02:16] 2025-11-24 17:01:16,779 | INFO     | zombie collector waiting for pid 2638752
[2025-11-24 18:02:16] 2025-11-24 17:01:16,779 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 18:02:16] 2025-11-24 17:01:16,779 | INFO     | collected zombie processes
[2025-11-24 18:02:16] 2025-11-24 17:01:16,779 | INFO     | will attempt to kill all subprocesses of pid=2638752
[2025-11-24 18:02:16] 2025-11-24 17:01:16,824 | INFO     | process IDs to be killed: [2638752] (in reverse order)
[2025-11-24 18:02:16] 2025-11-24 17:01:16,849 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 18:02:16] 2025-11-24 17:01:16,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 18:02:16] 2025-11-24 17:01:16,851 | INFO     | did not find any defunct processes belonging to 2638752
[2025-11-24 18:02:16] 2025-11-24 17:01:16,852 | INFO     | did not find any defunct processes belonging to 2638752
[2025-11-24 18:02:16] 2025-11-24 17:01:16,853 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 18:02:16] 2025-11-24 17:01:16,853 | INFO     | ready for new job
[2025-11-24 18:02:16] 2025-11-24 17:01:16,853 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 18:02:16] 2025-11-24 17:01:16,854 | INFO     | ***************************************
[2025-11-24 18:02:16] 2025-11-24 17:01:16,854 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 18:02:16] 2025-11-24 17:01:16,854 | INFO     | ***************************************
[2025-11-24 18:02:16] 2025-11-24 17:01:16,854 | INFO     | 
[2025-11-24 18:02:16] 2025-11-24 17:01:16,854 | INFO     | architecture information:
[2025-11-24 18:02:16] 2025-11-24 17:01:16,855 | INFO     | executing command: cat /etc/os-release
[2025-11-24 18:02:16] 2025-11-24 17:01:16,863 | INFO     | cat /etc/os-release:
[2025-11-24 18:02:16] NAME="CentOS Linux"
[2025-11-24 18:02:16] VERSION="7 (Core)"
[2025-11-24 18:02:16] ID="centos"
[2025-11-24 18:02:16] ID_LIKE="rhel fedora"
[2025-11-24 18:02:16] VERSION_ID="7"
[2025-11-24 18:02:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 18:02:16] ANSI_COLOR="0;31"
[2025-11-24 18:02:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 18:02:16] HOME_URL="https://www.centos.org/"
[2025-11-24 18:02:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 18:02:16] 
[2025-11-24 18:02:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 18:02:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 18:02:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 18:02:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 18:02:16] 
[2025-11-24 18:02:16] 2025-11-24 17:01:16,863 | INFO     | ***************************************
[2025-11-24 18:02:16] 2025-11-24 17:01:17,366 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 18:02:16] 2025-11-24 17:01:17,379 | INFO     | sufficient remaining disk space (365246283776 B)
[2025-11-24 18:02:16] 2025-11-24 17:01:17,379 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 18:02:16] 2025-11-24 17:01:17,379 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 18:02:16] 2025-11-24 17:01:17,379 | INFO     | update_server=False
[2025-11-24 18:02:16] 2025-11-24 17:01:17,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 18:02:16] 2025-11-24 17:01:17,379 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 18:02:16] 2025-11-24 17:01:17,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:02:16] 2025-11-24 17:01:17,767 | INFO     | all job control threads have been joined
[2025-11-24 18:02:16] 2025-11-24 17:01:17,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:02:16] 2025-11-24 17:01:17,910 | INFO     | aborting loop
[2025-11-24 18:02:16] 2025-11-24 17:01:18,152 | INFO     | all data control threads have been joined
[2025-11-24 18:02:16] 2025-11-24 17:01:18,276 | INFO     | all payload control threads have been joined
[2025-11-24 18:02:16] 2025-11-24 17:01:18,385 | INFO     | [job] queue monitor thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:18,385 | INFO     | [job] retrieve thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:18,507 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:18,773 | INFO     | [job] control thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:18,916 | INFO     | [job] job monitor thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:18,968 | INFO     | [data] copytool_in thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:19,136 | INFO     | [payload] validate_post thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:19,158 | INFO     | [data] control thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:19,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 18:02:16] 2025-11-24 17:01:19,244 | INFO     | [payload] failed_post thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:19,282 | INFO     | [payload] control thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:19,385 | INFO     | [data] copytool_out thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:19,513 | INFO     | [job] validate thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:19,552 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:19,748 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:23,216 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:27,718 | INFO     | job.realtimelogging is not enabled
[2025-11-24 18:02:16] 2025-11-24 17:01:28,724 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 18:02:16] 2025-11-24 17:01:48,023 | INFO     | PID=2632308 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 18:02:16] 2025-11-24 17:01:48,023 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 18:02:16] 2025-11-24 17:01:48,023 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 18:02:16] 2025-11-24 17:01:48,023 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 18:02:16] 2025-11-24 17:02:10,990 | INFO     | [monitor] cgroup control has ended
[2025-11-24 18:02:16] 2025-11-24 17:02:11,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140243083093824)>', '<ExcThread(monitor, started 140242736629504)>']
[2025-11-24 18:02:16] 2025-11-24 17:02:12,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 18:02:16] 2025-11-24 17:02:12,152 | INFO     | [monitor] control thread has ended
[2025-11-24 18:02:16] 2025-11-24 17:02:16,770 | INFO     | all workflow threads have been joined
[2025-11-24 18:02:16] 2025-11-24 17:02:16,771 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 18:02:16] 2025-11-24 17:02:16,771 | INFO     | traces error code: 0
[2025-11-24 18:02:16] 2025-11-24 17:02:16,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 18:02:16] 2025-11-24 17:02:16,822 [wrapper] ==== pilot stdout END ====
[2025-11-24 18:02:16] 2025-11-24 17:02:16,824 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 18:02:16] 2025-11-24 17:02:16,827 [wrapper] pilotpid: 2632308
[2025-11-24 18:02:16] 2025-11-24 17:02:16,829 [wrapper] Pilot exit status: 0
[2025-11-24 18:02:16] 2025-11-24 17:02:16,836 [wrapper] pandaids: 6893880793
[2025-11-24 18:02:16] 2025-11-24 17:02:16,854 [wrapper] cleanup supervisor_pilot 2690166 2632309
[2025-11-24 18:02:16] 2025-11-24 17:02:16,856 [wrapper] Test setup, not cleaning
[2025-11-24 18:02:16] 2025-11-24 17:02:16,859 [wrapper] apfmon messages muted
[2025-11-24 18:02:16] 2025-11-24 17:02:16,861 [wrapper] ==== wrapper stdout END ====
[2025-11-24 18:02:16] 2025-11-24 17:02:16,863 [wrapper] ==== wrapper stderr END ====
[2025-11-24 18:02:16]  *** Error codes and diagnostics ***
[2025-11-24 18:02:16]     "exeErrorCode": 0,
[2025-11-24 18:02:16]     "exeErrorDiag": "",
[2025-11-24 18:02:16]     "pilotErrorCode": 0,
[2025-11-24 18:02:16]     "pilotErrorDiag": "",
[2025-11-24 18:02:16]  *** Listing of results directory ***
[2025-11-24 18:02:16] total 1312164
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc      5112 Nov 20 20:36 queuedata.json
[2025-11-24 18:02:16] -rwx------ 1 boinc boinc     36292 Nov 20 20:37 runpilot2-wrapper.sh
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc       100 Nov 24 09:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 18:02:16] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 09:49 run_atlas
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc       105 Nov 24 09:49 job.xml
[2025-11-24 18:02:16] -rw-r--r-- 2 boinc boinc 411011301 Nov 24 09:49 EVNT.47493127._000843.pool.root.1
[2025-11-24 18:02:16] drwxrwx--x 2 boinc boinc      4096 Nov 24 09:49 shared
[2025-11-24 18:02:16] -rw-r--r-- 2 boinc boinc    590105 Nov 24 09:49 input.tar.gz
[2025-11-24 18:02:16] -rw-r--r-- 2 boinc boinc     15847 Nov 24 09:49 start_atlas.sh
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc         0 Nov 24 09:49 boinc_setup_complete
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc      6446 Nov 24 09:49 init_data.xml
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc         0 Nov 24 09:49 boinc_lockfile
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc      2785 Nov 24 09:49 pandaJob.out
[2025-11-24 18:02:16] -rw------- 1 boinc boinc    989794 Nov 24 09:49 agis_schedconf.cvmfs.json
[2025-11-24 18:02:16] drwx------ 5 boinc boinc      4096 Nov 24 09:49 pilot3
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc       531 Nov 24 17:56 boinc_task_state.xml
[2025-11-24 18:02:16] -rw------- 1 boinc boinc 918089888 Nov 24 18:00 HITS.47523449._008428.pool.root.1
[2025-11-24 18:02:16] -rw------- 1 boinc boinc      1022 Nov 24 18:01 memory_monitor_summary.json
[2025-11-24 18:02:16] -rw------- 1 boinc boinc        95 Nov 24 18:01 pilot_heartbeat.json
[2025-11-24 18:02:16] -rw------- 1 boinc boinc   1516227 Nov 24 18:01 agis_ddmendpoints.agis.ALL.json
[2025-11-24 18:02:16] -rw------- 1 boinc boinc   1174211 Nov 24 18:01 log.47523449._008428.job.log.tgz.1
[2025-11-24 18:02:16] -rw------- 1 boinc boinc      8574 Nov 24 18:01 heartbeat.json
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc        28 Nov 24 18:02 wrapper_checkpoint.txt
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc      8192 Nov 24 18:02 boinc_mmap_file
[2025-11-24 18:02:16] -rw------- 1 boinc boinc      4824 Nov 24 18:02 pilotlog.txt
[2025-11-24 18:02:16] -rw------- 1 boinc boinc   4153036 Nov 24 18:02 log.47523449._008428.job.log.1
[2025-11-24 18:02:16] -rw------- 1 boinc boinc       353 Nov 24 18:02 output.list
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc       620 Nov 24 18:02 runtime_log
[2025-11-24 18:02:16] -rw------- 1 boinc boinc   5345280 Nov 24 18:02 result.tar.gz
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc      8913 Nov 24 18:02 runtime_log.err
[2025-11-24 18:02:16] -rw------- 1 boinc boinc       668 Nov 24 18:02 bjJNDmLePg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmo1GKDmY8ADxm.diag
[2025-11-24 18:02:16] -rw-r--r-- 1 boinc boinc     11961 Nov 24 18:02 stderr.txt
[2025-11-24 18:02:16] HITS file was successfully produced:
[2025-11-24 18:02:16] -rw------- 1 boinc boinc 918089888 Nov 24 18:00 shared/HITS.pool.root.1
[2025-11-24 18:02:16]  *** Contents of shared directory: ***
[2025-11-24 18:02:16] total 1303780
[2025-11-24 18:02:16] -rw-r--r-- 2 boinc boinc 411011301 Nov 24 09:49 ATLAS.root_0
[2025-11-24 18:02:16] -rw-r--r-- 2 boinc boinc    590105 Nov 24 09:49 input.tar.gz
[2025-11-24 18:02:16] -rw-r--r-- 2 boinc boinc     15847 Nov 24 09:49 start_atlas.sh
[2025-11-24 18:02:16] -rw------- 1 boinc boinc 918089888 Nov 24 18:00 HITS.pool.root.1
[2025-11-24 18:02:16] -rw------- 1 boinc boinc   5345280 Nov 24 18:02 result.tar.gz
18:02:18 (2628591): run_atlas exited; CPU time 87080.996275
18:02:18 (2628591): called boinc_finish(0)

</stderr_txt>
]]>

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