Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:00:37 (2559006): wrapper (7.7.26015): starting
10:00:37 (2559006): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 10:00:37] Arguments: --nthreads 8
[2025-11-21 10:00:37] Threads: 8
[2025-11-21 10:00:37] Checking for CVMFS
[2025-11-21 10:00:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 10:00:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 10:00:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 10:00:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 10:00:38] 2.13.2.0 9369 25853 165984 153131 3 81 29953732 39288832 3792 16776704 0 14575863 99.569 13283069 34638 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 10:00:38] CVMFS is ok
[2025-11-21 10:00:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 10:00:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 10:00:38] Further information can be found at the LHC@home message board.
[2025-11-21 10:00:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 10:00:38] Checking for apptainer binary...
[2025-11-21 10:00:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 10:00:38] Running /usr/bin/apptainer --version
[2025-11-21 10:00:38] apptainer version 1.4.4-1.el9
[2025-11-21 10:00:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 10:00:38] c-210-23.aglt2.org
[2025-11-21 10:00:38] apptainer works
[2025-11-21 10:00:38] Set ATHENA_PROC_NUMBER=8
[2025-11-21 10:00:38] Set ATHENA_CORE_NUMBER=8
[2025-11-21 10:00:38] Starting ATLAS job with PandaID=6894248922
[2025-11-21 10:00:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:17:13]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:17:13] 2025-11-23 01:16:35,846 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 20:17:13] 2025-11-23 01:16:35,898 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0476
[2025-11-22 20:17:13] 2025-11-23 01:16:35,946 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894248922/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:17:13] 2025-11-23 01:16:35,947 | INFO     | extracted standard info from prmon json
[2025-11-22 20:17:13] 2025-11-23 01:16:35,948 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:17:13] 2025-11-23 01:16:35,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:17:13] 2025-11-23 01:16:36,116 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:17:13] 2025-11-23 01:16:36,121 | INFO     | sum of square deviations: 2563310189756.1143
[2025-11-22 20:17:13] 2025-11-23 01:16:36,223 | INFO     | sum of deviations: 6634918745764.489
[2025-11-22 20:17:13] 2025-11-23 01:16:36,223 | INFO     | mean x: 1763798919.6770525
[2025-11-22 20:17:13] 2025-11-23 01:16:36,223 | INFO     | mean y: 2995981.643916914
[2025-11-22 20:17:13] 2025-11-23 01:16:36,223 | INFO     | intersect: -4562453242.056114
[2025-11-22 20:17:13] 2025-11-23 01:16:36,226 | INFO     | chi2: 8.538085790093593
[2025-11-22 20:17:13] 2025-11-23 01:16:36,229 | INFO     | sum of square deviations: 2544344424737.364
[2025-11-22 20:17:13] 2025-11-23 01:16:36,240 | INFO     | time since job start (123348s) is within the limit (172800.0s)
[2025-11-22 20:17:13] 2025-11-23 01:16:36,329 | INFO     | sum of deviations: 7354918483570.958
[2025-11-22 20:17:13] 2025-11-23 01:16:36,330 | INFO     | mean x: 1763798767.192365
[2025-11-22 20:17:13] 2025-11-23 01:16:36,330 | INFO     | mean y: 3001769.8686167574
[2025-11-22 20:17:13] 2025-11-23 01:16:36,330 | INFO     | intersect: -5095598886.550716
[2025-11-22 20:17:13] 2025-11-23 01:16:36,333 | INFO     | chi2: 5.311217767690065
[2025-11-22 20:17:13] 2025-11-23 01:16:36,333 | INFO     | current chi2=5.311217767690065 (change=37.79381118596321 %)
[2025-11-22 20:17:13] 2025-11-23 01:16:36,336 | INFO     | sum of square deviations: 2525472352648.572
[2025-11-22 20:17:13] 2025-11-23 01:16:36,436 | INFO     | sum of deviations: 7974867908785.952
[2025-11-22 20:17:13] 2025-11-23 01:16:36,436 | INFO     | mean x: 1763798614.7072566
[2025-11-22 20:17:13] 2025-11-23 01:16:36,437 | INFO     | mean y: 3006777.5024850895
[2025-11-22 20:17:13] 2025-11-23 01:16:36,438 | INFO     | intersect: -5566668517.195685
[2025-11-22 20:17:13] 2025-11-23 01:16:36,440 | INFO     | chi2: 2.757920148005246
[2025-11-22 20:17:13] 2025-11-23 01:16:36,441 | INFO     | current chi2=2.757920148005246 (change=48.07367596970684 %)
[2025-11-22 20:17:13] 2025-11-23 01:16:36,444 | INFO     | sum of square deviations: 2506693986185.447
[2025-11-22 20:17:13] 2025-11-23 01:16:36,657 | INFO     | sum of deviations: 8138106272954.486
[2025-11-22 20:17:13] 2025-11-23 01:16:36,658 | INFO     | mean x: 1763798462.2227204
[2025-11-22 20:17:13] 2025-11-23 01:16:36,658 | INFO     | mean y: 3008102.0637767813
[2025-11-22 20:17:13] 2025-11-23 01:16:36,658 | INFO     | intersect: -5723251029.9834175
[2025-11-22 20:17:13] 2025-11-23 01:16:36,689 | INFO     | chi2: 2.4562575775846147
[2025-11-22 20:17:13] 2025-11-23 01:16:36,690 | INFO     | current chi2=2.4562575775846147 (change=10.938045854547985 %)
[2025-11-22 20:17:13] 2025-11-23 01:16:36,690 | INFO     | right removable region: 2006
[2025-11-22 20:17:13] 2025-11-23 01:16:36,692 | INFO     | sum of square deviations: 2544336805837.362
[2025-11-22 20:17:13] 2025-11-23 01:16:36,791 | INFO     | sum of deviations: 6130399121221.263
[2025-11-22 20:17:13] 2025-11-23 01:16:36,791 | INFO     | mean x: 1763799072.192365
[2025-11-22 20:17:13] 2025-11-23 01:16:36,792 | INFO     | mean y: 3000034.1591472486
[2025-11-22 20:17:13] 2025-11-23 01:16:36,792 | INFO     | intersect: -4246748763.787583
[2025-11-22 20:17:13] 2025-11-23 01:16:36,795 | INFO     | chi2: 6.714977918266575
[2025-11-22 20:17:13] 2025-11-23 01:16:36,795 | INFO     | current chi2=6.714977918266575 (change=21.35265347113634 %)
[2025-11-22 20:17:13] 2025-11-23 01:16:36,795 | INFO     | left removable region: 10
[2025-11-22 20:17:13] 2025-11-23 01:16:36,798 | INFO     | sum of square deviations: 2465694732708.689
[2025-11-22 20:17:13] 2025-11-23 01:16:36,895 | INFO     | sum of deviations: 7457945393884.735
[2025-11-22 20:17:13] 2025-11-23 01:16:36,895 | INFO     | mean x: 1763798736.755511
[2025-11-22 20:17:13] 2025-11-23 01:16:36,895 | INFO     | mean y: 3013531.0936873746
[2025-11-22 20:17:13] 2025-11-23 01:16:36,895 | INFO     | intersect: -5331918847.203932
[2025-11-22 20:17:13] 2025-11-23 01:16:36,898 | INFO     | chi2: 0.5342864099630513
[2025-11-22 20:17:13] 2025-11-23 01:16:36,898 | INFO     | current memory leak: 3.02 B/s (using 1996 data points, chi2=0.53)
[2025-11-22 20:17:13] 2025-11-23 01:16:36,900 | INFO     | could have reported an average CPU frequency of 2599 MHz (70 samples)
[2025-11-22 20:17:13] 2025-11-23 01:16:36,900 | INFO     | ..............................
[2025-11-22 20:17:13] 2025-11-23 01:16:36,900 | INFO     | . Timing measurements:
[2025-11-22 20:17:13] 2025-11-23 01:16:36,900 | INFO     | . get job = 0 s
[2025-11-22 20:17:13] 2025-11-23 01:16:36,901 | INFO     | . initial setup = 2 s
[2025-11-22 20:17:13] 2025-11-23 01:16:36,901 | INFO     | . payload setup = 5 s
[2025-11-22 20:17:13] 2025-11-23 01:16:36,901 | INFO     | . stage-in = 0 s
[2025-11-22 20:17:13] 2025-11-23 01:16:36,901 | INFO     | . payload execution = 123291 s
[2025-11-22 20:17:13] 2025-11-23 01:16:36,901 | INFO     | . stage-out = 12 s
[2025-11-22 20:17:13] 2025-11-23 01:16:36,901 | INFO     | . log creation = 3 s
[2025-11-22 20:17:13] 2025-11-23 01:16:36,901 | INFO     | ..............................
[2025-11-22 20:17:13] 2025-11-23 01:16:37,355 | INFO     | 
[2025-11-22 20:17:13] 2025-11-23 01:16:37,364 | INFO     | job summary report
[2025-11-22 20:17:13] 2025-11-23 01:16:37,364 | INFO     | --------------------------------------------------
[2025-11-22 20:17:13] 2025-11-23 01:16:37,364 | INFO     | PanDA job id: 6894248922
[2025-11-22 20:17:13] 2025-11-23 01:16:37,364 | INFO     | task id: 47533967
[2025-11-22 20:17:13] 2025-11-23 01:16:37,364 | INFO     | errors: (none)
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | pilot state: finished 
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | transexitcode: 0
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | exeerrorcode: 0
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | exeerrordiag: 
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | exitcode: 0
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | exitmsg: OK
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | cpuconsumptiontime: 309987 s
[2025-11-22 20:17:13] 2025-11-23 01:16:37,365 | INFO     | nevents: 1000
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | neventsw: 0
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | pid: 2569103
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | pgrp: 2569103
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | corecount: 8
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | event service: False
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | sizes: {0: 2298804, 4: 2299066, 11: 2299094, 123299: 2379955, 123313: 2388977, 123315: 2389033, 123333: 2389407}
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | --------------------------------------------------
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | 
[2025-11-22 20:17:13] 2025-11-23 01:16:37,366 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 20:17:13] 2025-11-23 01:16:37,415 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,415 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,415 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,415 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,415 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,416 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,416 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,416 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,416 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,416 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,416 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,416 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,416 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,417 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,417 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,417 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,417 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,417 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:17:13] 2025-11-23 01:16:37,417 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,417 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:17:13] 2025-11-23 01:16:37,418 | INFO     | job 6894248922 has completed (purged errors)
[2025-11-22 20:17:13] 2025-11-23 01:16:37,418 | INFO     | overall cleanup function is called
[2025-11-22 20:17:13] 2025-11-23 01:16:38,123 | INFO     | PID=2562667 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:17:13] 2025-11-23 01:16:38,123 | INFO     | .. there are 8 such processes running
[2025-11-22 20:17:13] 2025-11-23 01:16:38,460 | INFO     | --- collectZombieJob: --- 10, [2569103]
[2025-11-22 20:17:13] 2025-11-23 01:16:38,461 | INFO     | zombie collector waiting for pid 2569103
[2025-11-22 20:17:13] 2025-11-23 01:16:38,461 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:17:13] 2025-11-23 01:16:38,461 | INFO     | collected zombie processes
[2025-11-22 20:17:13] 2025-11-23 01:16:38,461 | INFO     | will attempt to kill all subprocesses of pid=2569103
[2025-11-22 20:17:13] 2025-11-23 01:16:38,910 | INFO     | process IDs to be killed: [2569103] (in reverse order)
[2025-11-22 20:17:13] 2025-11-23 01:16:39,136 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:17:13] 2025-11-23 01:16:39,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:17:13] 2025-11-23 01:16:39,160 | INFO     | did not find any defunct processes belonging to 2569103
[2025-11-22 20:17:13] 2025-11-23 01:16:39,182 | INFO     | did not find any defunct processes belonging to 2569103
[2025-11-22 20:17:13] 2025-11-23 01:16:39,183 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:17:13] 2025-11-23 01:16:39,184 | INFO     | ready for new job
[2025-11-22 20:17:13] 2025-11-23 01:16:39,184 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:17:13] 2025-11-23 01:16:39,200 | INFO     | ***************************************
[2025-11-22 20:17:13] 2025-11-23 01:16:39,200 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:17:13] 2025-11-23 01:16:39,200 | INFO     | ***************************************
[2025-11-22 20:17:13] 2025-11-23 01:16:39,200 | INFO     | 
[2025-11-22 20:17:13] 2025-11-23 01:16:39,202 | INFO     | architecture information:
[2025-11-22 20:17:13] 2025-11-23 01:16:39,207 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:17:13] 2025-11-23 01:16:39,259 | INFO     | cat /etc/os-release:
[2025-11-22 20:17:13] NAME="CentOS Linux"
[2025-11-22 20:17:13] VERSION="7 (Core)"
[2025-11-22 20:17:13] ID="centos"
[2025-11-22 20:17:13] ID_LIKE="rhel fedora"
[2025-11-22 20:17:13] VERSION_ID="7"
[2025-11-22 20:17:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:17:13] ANSI_COLOR="0;31"
[2025-11-22 20:17:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:17:13] HOME_URL="https://www.centos.org/"
[2025-11-22 20:17:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:17:13] 
[2025-11-22 20:17:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:17:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:17:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:17:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:17:13] 
[2025-11-22 20:17:13] 2025-11-23 01:16:39,259 | INFO     | ***************************************
[2025-11-22 20:17:13] 2025-11-23 01:16:39,762 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 20:17:13] 2025-11-23 01:16:39,822 | INFO     | sufficient remaining disk space (49679433728 B)
[2025-11-22 20:17:13] 2025-11-23 01:16:39,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:17:13] 2025-11-23 01:16:39,822 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:17:13] 2025-11-23 01:16:39,823 | INFO     | update_server=False
[2025-11-22 20:17:13] 2025-11-23 01:16:39,823 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:17:13] 2025-11-23 01:16:40,027 | INFO     | all data control threads have been joined
[2025-11-22 20:17:13] 2025-11-23 01:16:40,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:17:13] 2025-11-23 01:16:40,378 | INFO     | all payload control threads have been joined
[2025-11-22 20:17:13] 2025-11-23 01:16:40,788 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:17:13] 2025-11-23 01:16:40,789 | INFO     | aborting loop
[2025-11-22 20:17:13] 2025-11-23 01:16:40,829 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:40,845 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:40,888 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:41,033 | INFO     | [data] control thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:41,258 | INFO     | all job control threads have been joined
[2025-11-22 20:17:13] 2025-11-23 01:16:41,384 | INFO     | [payload] control thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:41,621 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:41,668 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:41,722 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:41,794 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:41,955 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:42,132 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:42,140 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:42,264 | INFO     | [job] control thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:42,292 | INFO     | [job] validate thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:42,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:17:13] 2025-11-23 01:16:42,966 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:17:13] 2025-11-23 01:16:43,396 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:45,173 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:17:13] 2025-11-23 01:16:46,984 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:17:13] 2025-11-23 01:16:48,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139700200679232)>', '<ExcThread(monitor, started 139699565876992)>']
[2025-11-22 20:17:13] 2025-11-23 01:16:53,089 | INFO     | all workflow threads have been joined
[2025-11-22 20:17:13] 2025-11-23 01:16:53,090 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:17:13] 2025-11-23 01:16:53,090 | INFO     | traces error code: 0
[2025-11-22 20:17:13] 2025-11-23 01:16:53,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:17:13] 2025-11-23 01:17:11,232 | INFO     | PID=2562667 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:17:13] 2025-11-23 01:17:11,232 | INFO     | .. there are 8 such processes running
[2025-11-22 20:17:13] 2025-11-23 01:17:11,233 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:17:13] 2025-11-23 01:17:11,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:17:13] 2025-11-23 01:17:11,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:17:13] 2025-11-23 01:17:11,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:17:13] 2025-11-23 01:17:11,234 | INFO     | [monitor] control thread has ended
[2025-11-22 20:17:13] 2025-11-23 01:17:11,473 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:17:13] 2025-11-23 01:17:11,507 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:17:13] 2025-11-23 01:17:11,544 [wrapper] pilotpid: 2562667
[2025-11-22 20:17:13] 2025-11-23 01:17:11,559 [wrapper] Pilot exit status: 0
[2025-11-22 20:17:13] 2025-11-23 01:17:11,670 [wrapper] pandaids: 6894248922
[2025-11-22 20:17:13] 2025-11-23 01:17:11,870 [wrapper] cleanup supervisor_pilot 1381597 2562668
[2025-11-22 20:17:13] 2025-11-23 01:17:11,874 [wrapper] Test setup, not cleaning
[2025-11-22 20:17:13] 2025-11-23 01:17:11,877 [wrapper] apfmon messages muted
[2025-11-22 20:17:13] 2025-11-23 01:17:11,881 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:17:13] 2025-11-23 01:17:11,884 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:17:13]  *** Error codes and diagnostics ***
[2025-11-22 20:17:13]     "exeErrorCode": 0,
[2025-11-22 20:17:13]     "exeErrorDiag": "",
[2025-11-22 20:17:13]     "pilotErrorCode": 0,
[2025-11-22 20:17:13]     "pilotErrorDiag": "",
[2025-11-22 20:17:13]  *** Listing of results directory ***
[2025-11-22 20:17:13] total 1353520
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 20:08 pilot3.tar.gz
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 20:43 queuedata.json
[2025-11-22 20:17:13] -rwx------. 1 boincer umatlas     36292 Nov 20 20:44 runpilot2-wrapper.sh
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas       100 Nov 21 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:17:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 10:00 run_atlas
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas       105 Nov 21 10:00 job.xml
[2025-11-22 20:17:13] -rw-r--r--. 2 boincer umatlas 410720328 Nov 21 10:00 EVNT.47493127._002098.pool.root.1
[2025-11-22 20:17:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 10:00 start_atlas.sh
[2025-11-22 20:17:13] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 10:00 shared
[2025-11-22 20:17:13] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 10:00 input.tar.gz
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas         0 Nov 21 10:00 boinc_lockfile
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 10:00 pandaJob.out
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas        57 Nov 21 10:00 setup.sh.local
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas    989798 Nov 21 10:00 agis_schedconf.cvmfs.json
[2025-11-22 20:17:13] drwx------. 5 boincer umatlas      4096 Nov 21 10:00 pilot3
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas       533 Nov 22 20:00 boinc_task_state.xml
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas      6661 Nov 22 20:12 init_data.xml
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas 935826140 Nov 22 20:15 HITS.47533967._000692.pool.root.1
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas      1072 Nov 22 20:16 memory_monitor_summary.json
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas   1526164 Nov 22 20:16 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas   2806588 Nov 22 20:16 log.47533967._000692.job.log.tgz.1
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas      8653 Nov 22 20:16 heartbeat.json
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas        95 Nov 22 20:17 pilot_heartbeat.json
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas       822 Nov 22 20:17 pilotlog.txt
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas  14959444 Nov 22 20:17 log.47533967._000692.job.log.1
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas        29 Nov 22 20:17 wrapper_checkpoint.txt
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas       353 Nov 22 20:17 output.list
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas       620 Nov 22 20:17 runtime_log
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas  17786880 Nov 22 20:17 result.tar.gz
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas       668 Nov 22 20:17 v3DLDmBNVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWpIKDmLvW7tn.diag
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas      9344 Nov 22 20:17 runtime_log.err
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 20:17 boinc_mmap_file
[2025-11-22 20:17:13] -rw-r--r--. 1 boincer umatlas     21379 Nov 22 20:17 stderr.txt
[2025-11-22 20:17:13] HITS file was successfully produced:
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas 935826140 Nov 22 20:15 shared/HITS.pool.root.1
[2025-11-22 20:17:13]  *** Contents of shared directory: ***
[2025-11-22 20:17:13] total 1332964
[2025-11-22 20:17:13] -rw-r--r--. 2 boincer umatlas 410720328 Nov 21 10:00 ATLAS.root_0
[2025-11-22 20:17:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 10:00 start_atlas.sh
[2025-11-22 20:17:13] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 10:00 input.tar.gz
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas 935826140 Nov 22 20:15 HITS.pool.root.1
[2025-11-22 20:17:13] -rw-------. 1 boincer umatlas  17786880 Nov 22 20:17 result.tar.gz
20:17:15 (2559006): run_atlas exited; CPU time 311923.417368
20:17:15 (2559006): called boinc_finish(0)

</stderr_txt>
]]>

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