Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:03:49 (587): wrapper (7.7.26015): starting
10:03:49 (587): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 10:03:49] Arguments: --nthreads 8
[2025-11-24 10:03:49] Threads: 8
[2025-11-24 10:03:49] Checking for CVMFS
[2025-11-24 10:03:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:03:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:03:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:03:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:03:50] 2.11.2.0 2946 282219 139136 153239 3 210 25163957 25165825 956 130560 11 134110955 99.889 77706831 2810 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 10:03:50] CVMFS is ok
[2025-11-24 10:03:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:03:50] Checking for apptainer binary...
[2025-11-24 10:03:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:03:50] Running /usr/bin/apptainer --version
[2025-11-24 10:03:50] apptainer version 1.3.2-1.el7
[2025-11-24 10:03:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:03:51] cg-vwn485.simple-grid.lan
[2025-11-24 10:03:51] apptainer works
[2025-11-24 10:03:51] Set ATHENA_PROC_NUMBER=8
[2025-11-24 10:03:51] Set ATHENA_CORE_NUMBER=8
[2025-11-24 10:03:51] Starting ATLAS job with PandaID=6893850226
[2025-11-24 10:03:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:07:32]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:07:33] 2025-11-25 07:06:33,716 | INFO     | time since job start (79347s) is within the limit (172800.0s)
[2025-11-25 08:07:33] 2025-11-25 07:06:35,724 | INFO     | time since job start (79349s) is within the limit (172800.0s)
[2025-11-25 08:07:33] 2025-11-25 07:06:35,830 | INFO     | monitor loop #5306: job 0:6893850226 is in state 'finished'
[2025-11-25 08:07:33] 2025-11-25 07:06:35,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:07:33] 2025-11-25 07:06:36,967 | INFO     | PID=4358 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 08:07:33] 2025-11-25 07:06:36,967 | INFO     | .. there are 9 such processes running
[2025-11-25 08:07:33] 2025-11-25 07:06:37,970 | INFO     | time since job start (79351s) is within the limit (172800.0s)
[2025-11-25 08:07:33] 2025-11-25 07:06:38,352 | INFO     | monitor loop #5307: job 0:6893850226 is in state 'finished'
[2025-11-25 08:07:33] 2025-11-25 07:06:38,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:07:33] 2025-11-25 07:06:39,981 | INFO     | time since job start (79353s) is within the limit (172800.0s)
[2025-11-25 08:07:33] 2025-11-25 07:06:40,864 | INFO     | monitor loop #5308: job 0:6893850226 is in state 'finished'
[2025-11-25 08:07:33] 2025-11-25 07:06:40,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:07:33] 2025-11-25 07:06:41,988 | INFO     | time since job start (79355s) is within the limit (172800.0s)
[2025-11-25 08:07:33] 2025-11-25 07:06:43,371 | INFO     | monitor loop #5309: job 0:6893850226 is in state 'finished'
[2025-11-25 08:07:33] 2025-11-25 07:06:43,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:07:33] 2025-11-25 07:06:43,804 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 08:07:33] 2025-11-25 07:06:43,813 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-25 08:07:33] 2025-11-25 07:06:43,815 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6893850226/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 08:07:33] 2025-11-25 07:06:43,816 | INFO     | extracted standard info from prmon json
[2025-11-25 08:07:33] 2025-11-25 07:06:43,816 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 08:07:33] 2025-11-25 07:06:43,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 08:07:33] 2025-11-25 07:06:43,838 | INFO     | fitting pss+swap vs Time
[2025-11-25 08:07:33] 2025-11-25 07:06:43,840 | INFO     | sum of square deviations: 679679954042.9708
[2025-11-25 08:07:33] 2025-11-25 07:06:43,917 | INFO     | sum of deviations: 1706684173032.5933
[2025-11-25 08:07:33] 2025-11-25 07:06:43,918 | INFO     | mean x: 1764014667.1039262
[2025-11-25 08:07:33] 2025-11-25 07:06:43,918 | INFO     | mean y: 2854944.040030793
[2025-11-25 08:07:33] 2025-11-25 07:06:43,918 | INFO     | intersect: -4426606150.752376
[2025-11-25 08:07:33] 2025-11-25 07:06:43,919 | INFO     | chi2: 16.078443366203057
[2025-11-25 08:07:33] 2025-11-25 07:06:43,921 | INFO     | sum of square deviations: 671862040164.3538
[2025-11-25 08:07:33] 2025-11-25 07:06:43,984 | INFO     | sum of deviations: 2132877458367.5894
[2025-11-25 08:07:33] 2025-11-25 07:06:43,985 | INFO     | mean x: 1764014514.6081917
[2025-11-25 08:07:33] 2025-11-25 07:06:43,985 | INFO     | mean y: 2863256.377897991
[2025-11-25 08:07:33] 2025-11-25 07:06:43,985 | INFO     | intersect: -5597135805.216169
[2025-11-25 08:07:33] 2025-11-25 07:06:43,986 | INFO     | chi2: 12.885859841885509
[2025-11-25 08:07:33] 2025-11-25 07:06:43,987 | INFO     | current chi2=12.885859841885509 (change=19.856297351697428 %)
[2025-11-25 08:07:33] 2025-11-25 07:06:43,987 | INFO     | right removable region: 1293
[2025-11-25 08:07:33] 2025-11-25 07:06:43,988 | INFO     | sum of square deviations: 671861165424.3536
[2025-11-25 08:07:33] 2025-11-25 07:06:44,001 | INFO     | time since job start (79358s) is within the limit (172800.0s)
[2025-11-25 08:07:33] 2025-11-25 07:06:44,047 | INFO     | sum of deviations: 1302438280228.4807
[2025-11-25 08:07:33] 2025-11-25 07:06:44,048 | INFO     | mean x: 1764014819.6081917
[2025-11-25 08:07:33] 2025-11-25 07:06:44,048 | INFO     | mean y: 2862824.0680061826
[2025-11-25 08:07:33] 2025-11-25 07:06:44,048 | INFO     | intersect: -3416772877.746835
[2025-11-25 08:07:33] 2025-11-25 07:06:44,050 | INFO     | chi2: 13.479684003459662
[2025-11-25 08:07:33] 2025-11-25 07:06:44,050 | INFO     | current chi2=13.479684003459662 (change=16.163003492029564 %)
[2025-11-25 08:07:33] 2025-11-25 07:06:44,050 | INFO     | left removable region: 10
[2025-11-25 08:07:33] 2025-11-25 07:06:44,052 | INFO     | sum of square deviations: 654872647632.9286
[2025-11-25 08:07:33] 2025-11-25 07:06:44,093 | INFO     | sum of deviations: 1749002565844.3337
[2025-11-25 08:07:33] 2025-11-25 07:06:44,094 | INFO     | mean x: 1764014789.1153545
[2025-11-25 08:07:33] 2025-11-25 07:06:44,094 | INFO     | mean y: 2874505.5923616523
[2025-11-25 08:07:33] 2025-11-25 07:06:44,094 | INFO     | intersect: -4708371877.1997175
[2025-11-25 08:07:33] 2025-11-25 07:06:44,095 | INFO     | chi2: 9.482576985181243
[2025-11-25 08:07:33] 2025-11-25 07:06:44,096 | INFO     | current memory leak: 2.67 B/s (using 1283 data points, chi2=9.48)
[2025-11-25 08:07:33] 2025-11-25 07:06:44,097 | INFO     | could have reported an average CPU frequency of 2249 MHz (44 samples)
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | ..............................
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | . Timing measurements:
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | . get job = 0 s
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | . initial setup = 2 s
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | . payload setup = 7 s
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | . stage-in = 0 s
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | . payload execution = 79229 s
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | . stage-out = 5 s
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | . log creation = 2 s
[2025-11-25 08:07:33] 2025-11-25 07:06:44,098 | INFO     | ..............................
[2025-11-25 08:07:33] 2025-11-25 07:06:44,715 | INFO     | 
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | job summary report
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | --------------------------------------------------
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | PanDA job id: 6893850226
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | task id: 47523449
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | errors: (none)
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | pilot state: finished 
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | transexitcode: 0
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | exeerrorcode: 0
[2025-11-25 08:07:33] 2025-11-25 07:06:44,716 | INFO     | exeerrordiag: 
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | exitcode: 0
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | exitmsg: OK
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | cpuconsumptiontime: 307141 s
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | nevents: 1000
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | neventsw: 0
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | pid: 10804
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | pgrp: 10804
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | corecount: 8
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | event service: False
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | sizes: {0: 2298808, 1: 2298836, 5: 2299098, 11: 2299154, 79241: 2357967, 79248: 2367938, 79342: 2368128}
[2025-11-25 08:07:33] 2025-11-25 07:06:44,717 | INFO     | --------------------------------------------------
[2025-11-25 08:07:33] 2025-11-25 07:06:44,718 | INFO     | 
[2025-11-25 08:07:33] 2025-11-25 07:06:44,718 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-25 08:07:33] 2025-11-25 07:06:45,164 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,164 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,165 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,166 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,166 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,166 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,166 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 08:07:33] 2025-11-25 07:06:45,166 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,166 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 08:07:33] 2025-11-25 07:06:45,166 | INFO     | job 6893850226 has completed (purged errors)
[2025-11-25 08:07:33] 2025-11-25 07:06:45,166 | INFO     | overall cleanup function is called
[2025-11-25 08:07:33] 2025-11-25 07:06:46,182 | INFO     | --- collectZombieJob: --- 10, [10804]
[2025-11-25 08:07:33] 2025-11-25 07:06:46,183 | INFO     | zombie collector waiting for pid 10804
[2025-11-25 08:07:33] 2025-11-25 07:06:46,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 08:07:33] 2025-11-25 07:06:46,183 | INFO     | collected zombie processes
[2025-11-25 08:07:33] 2025-11-25 07:06:46,183 | INFO     | will attempt to kill all subprocesses of pid=10804
[2025-11-25 08:07:33] 2025-11-25 07:06:46,279 | INFO     | process IDs to be killed: [10804] (in reverse order)
[2025-11-25 08:07:33] 2025-11-25 07:06:47,162 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 08:07:33] 2025-11-25 07:06:47,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 08:07:33] 2025-11-25 07:06:47,166 | INFO     | did not find any defunct processes belonging to 10804
[2025-11-25 08:07:33] 2025-11-25 07:06:47,171 | INFO     | did not find any defunct processes belonging to 10804
[2025-11-25 08:07:33] 2025-11-25 07:06:47,235 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 08:07:33] 2025-11-25 07:06:47,235 | INFO     | ready for new job
[2025-11-25 08:07:33] 2025-11-25 07:06:47,235 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 08:07:33] 2025-11-25 07:06:47,241 | INFO     | ***************************************
[2025-11-25 08:07:33] 2025-11-25 07:06:47,241 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 08:07:33] 2025-11-25 07:06:47,241 | INFO     | ***************************************
[2025-11-25 08:07:33] 2025-11-25 07:06:47,241 | INFO     | 
[2025-11-25 08:07:33] 2025-11-25 07:06:47,242 | INFO     | pilot is running in a VM
[2025-11-25 08:07:33] 2025-11-25 07:06:47,242 | INFO     | architecture information:
[2025-11-25 08:07:33] 2025-11-25 07:06:47,258 | INFO     | executing command: cat /etc/os-release
[2025-11-25 08:07:33] 2025-11-25 07:06:47,588 | INFO     | cat /etc/os-release:
[2025-11-25 08:07:33] NAME="CentOS Linux"
[2025-11-25 08:07:33] VERSION="7 (Core)"
[2025-11-25 08:07:33] ID="centos"
[2025-11-25 08:07:33] ID_LIKE="rhel fedora"
[2025-11-25 08:07:33] VERSION_ID="7"
[2025-11-25 08:07:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 08:07:33] ANSI_COLOR="0;31"
[2025-11-25 08:07:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 08:07:33] HOME_URL="https://www.centos.org/"
[2025-11-25 08:07:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 08:07:33] 
[2025-11-25 08:07:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 08:07:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 08:07:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 08:07:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 08:07:33] 
[2025-11-25 08:07:33] 2025-11-25 07:06:47,588 | INFO     | ***************************************
[2025-11-25 08:07:33] 2025-11-25 07:06:48,092 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-25 08:07:33] 2025-11-25 07:06:48,404 | INFO     | sufficient remaining disk space (495155412992 B)
[2025-11-25 08:07:33] 2025-11-25 07:06:48,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 08:07:33] 2025-11-25 07:06:48,405 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:07:33] 2025-11-25 07:06:48,405 | INFO     | update_server=False
[2025-11-25 08:07:33] 2025-11-25 07:06:48,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:07:33] 2025-11-25 07:06:48,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:07:33] 2025-11-25 07:06:48,834 | INFO     | all data control threads have been joined
[2025-11-25 08:07:33] 2025-11-25 07:06:49,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:07:33] 2025-11-25 07:06:49,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:07:33] 2025-11-25 07:06:49,395 | INFO     | aborting loop
[2025-11-25 08:07:33] 2025-11-25 07:06:49,411 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:49,606 | INFO     | [job] validate thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:49,621 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:49,706 | INFO     | all payload control threads have been joined
[2025-11-25 08:07:33] 2025-11-25 07:06:49,771 | INFO     | all job control threads have been joined
[2025-11-25 08:07:33] 2025-11-25 07:06:49,841 | INFO     | [data] control thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:49,958 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,048 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,064 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,240 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,401 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,470 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,543 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,630 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,712 | INFO     | [payload] control thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,778 | INFO     | [job] control thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:50,786 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:06:51,528 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:07:33] 2025-11-25 07:06:55,537 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:07:33] 2025-11-25 07:07:17,239 | INFO     | PID=4358 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 08:07:33] 2025-11-25 07:07:17,240 | INFO     | .. there are 9 such processes running
[2025-11-25 08:07:33] 2025-11-25 07:07:17,240 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:07:33] 2025-11-25 07:07:17,240 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:07:33] 2025-11-25 07:07:17,240 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:07:33] 2025-11-25 07:07:24,625 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:07:33] 2025-11-25 07:07:25,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140225376982848)>', '<ExcThread(monitor, started 140224474625792)>']
[2025-11-25 08:07:33] 2025-11-25 07:07:25,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:07:33] 2025-11-25 07:07:25,287 | INFO     | [monitor] control thread has ended
[2025-11-25 08:07:33] 2025-11-25 07:07:30,144 | INFO     | all workflow threads have been joined
[2025-11-25 08:07:33] 2025-11-25 07:07:30,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:07:33] 2025-11-25 07:07:30,145 | INFO     | traces error code: 0
[2025-11-25 08:07:33] 2025-11-25 07:07:30,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:07:33] 2025-11-25 07:07:30,468 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:07:33] 2025-11-25 07:07:30,557 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:07:33] 2025-11-25 07:07:30,645 [wrapper] pilotpid: 4358
[2025-11-25 08:07:33] 2025-11-25 07:07:30,688 [wrapper] Pilot exit status: 0
[2025-11-25 08:07:33] 2025-11-25 07:07:31,072 [wrapper] pandaids: 6893850226
[2025-11-25 08:07:33] 2025-11-25 07:07:31,853 [wrapper] cleanup supervisor_pilot 20503 4359
[2025-11-25 08:07:33] 2025-11-25 07:07:31,975 [wrapper] Test setup, not cleaning
[2025-11-25 08:07:33] 2025-11-25 07:07:32,084 [wrapper] apfmon messages muted
[2025-11-25 08:07:33] 2025-11-25 07:07:32,189 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:07:33] 2025-11-25 07:07:32,310 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:07:33]  *** Error codes and diagnostics ***
[2025-11-25 08:07:33]     "exeErrorCode": 0,
[2025-11-25 08:07:33]     "exeErrorDiag": "",
[2025-11-25 08:07:33]     "pilotErrorCode": 0,
[2025-11-25 08:07:33]     "pilotErrorDiag": "",
[2025-11-25 08:07:33]  *** Listing of results directory ***
[2025-11-25 08:07:33] total 1324796
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:15 queuedata.json
[2025-11-25 08:07:33] -rwx------. 1 boinc boinc     36292 Nov 20 12:16 runpilot2-wrapper.sh
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc       100 Nov 24 10:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:07:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 10:03 run_atlas
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc       105 Nov 24 10:03 job.xml
[2025-11-25 08:07:33] -rw-r--r--. 2 boinc boinc 408707085 Nov 24 10:03 EVNT.47493127._000321.pool.root.1
[2025-11-25 08:07:33] -rw-r--r--. 2 boinc boinc     15847 Nov 24 10:03 start_atlas.sh
[2025-11-25 08:07:33] drwxrwx--x. 2 boinc boinc        68 Nov 24 10:03 shared
[2025-11-25 08:07:33] -rw-r--r--. 2 boinc boinc    590102 Nov 24 10:03 input.tar.gz
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc      6393 Nov 24 10:03 init_data.xml
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc         0 Nov 24 10:03 boinc_lockfile
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc      2786 Nov 24 10:03 pandaJob.out
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc    989794 Nov 24 10:04 agis_schedconf.cvmfs.json
[2025-11-25 08:07:33] drwx------. 5 boinc boinc      4096 Nov 24 10:04 pilot3
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc       533 Nov 25 07:39 boinc_task_state.xml
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc 918023348 Nov 25 08:03 HITS.47523449._003208.pool.root.1
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc      1034 Nov 25 08:04 memory_monitor_summary.json
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc   1516227 Nov 25 08:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc   2388857 Nov 25 08:05 log.47523449._003208.job.log.tgz.1
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc        95 Nov 25 08:06 pilot_heartbeat.json
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc      8622 Nov 25 08:06 heartbeat.json
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc      8192 Nov 25 08:07 boinc_mmap_file
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc        29 Nov 25 08:07 wrapper_checkpoint.txt
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc      4884 Nov 25 08:07 pilotlog.txt
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc  10590392 Nov 25 08:07 log.47523449._003208.job.log.1
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc       353 Nov 25 08:07 output.list
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc       620 Nov 25 08:07 runtime_log
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc  12994560 Nov 25 08:07 result.tar.gz
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc       662 Nov 25 08:07 SOnLDmSpHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtbHKDmfpTPDn.diag
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc      8833 Nov 25 08:07 runtime_log.err
[2025-11-25 08:07:33] -rw-r--r--. 1 boinc boinc     21445 Nov 25 08:07 stderr.txt
[2025-11-25 08:07:33] HITS file was successfully produced:
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc 918023348 Nov 25 08:03 shared/HITS.pool.root.1
[2025-11-25 08:07:33]  *** Contents of shared directory: ***
[2025-11-25 08:07:33] total 1308928
[2025-11-25 08:07:33] -rw-r--r--. 2 boinc boinc 408707085 Nov 24 10:03 ATLAS.root_0
[2025-11-25 08:07:33] -rw-r--r--. 2 boinc boinc     15847 Nov 24 10:03 start_atlas.sh
[2025-11-25 08:07:33] -rw-r--r--. 2 boinc boinc    590102 Nov 24 10:03 input.tar.gz
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc 918023348 Nov 25 08:03 HITS.pool.root.1
[2025-11-25 08:07:33] -rw-------. 1 boinc boinc  12994560 Nov 25 08:07 result.tar.gz
08:07:34 (587): run_atlas exited; CPU time 307391.316973
08:07:34 (587): called boinc_finish(0)

</stderr_txt>
]]>

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