Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:42:32 (9740): wrapper (7.7.26015): starting
06:42:32 (9740): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 06:42:32] Arguments: --nthreads 8
[2025-11-21 06:42:32] Threads: 8
[2025-11-21 06:42:32] Checking for CVMFS
[2025-11-21 06:42:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 06:42:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 06:42:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 06:42:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 06:42:33] 2.11.3.0 1823698 21322 207648 153131 4 512 37806032 45568001 15754 130560 0 157090547 99.810 89758501 19658 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-21 06:42:33] CVMFS is ok
[2025-11-21 06:42:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 06:42:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 06:42:33] Further information can be found at the LHC@home message board.
[2025-11-21 06:42:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 06:42:33] Checking for apptainer binary...
[2025-11-21 06:42:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 06:42:33] Running /usr/bin/apptainer --version
[2025-11-21 06:42:33] apptainer version 1.4.1-1.el9
[2025-11-21 06:42:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 06:42:33] wns0016.triumf.lcg
[2025-11-21 06:42:33] apptainer works
[2025-11-21 06:42:33] Set ATHENA_PROC_NUMBER=8
[2025-11-21 06:42:33] Set ATHENA_CORE_NUMBER=8
[2025-11-21 06:42:33] Starting ATLAS job with PandaID=6894277114
[2025-11-21 06:42:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 06:50:02]  *** The last 200 lines of the pilot log: ***
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | ..............................
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | . Timing measurements:
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . get job = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . initial setup = 4 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . payload setup = 17 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . stage-in = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . payload execution = 196 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . stage-out = 1 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . log creation = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | ..............................
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894277114/pilotlog.txt
[2025-11-21 06:50:02] 2025-11-21 14:49:00,468 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 06:50:02] - Log from pilotlog.txt -
[2025-11-21 06:50:02] 2025-11-21 14:49:00,428 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894277114/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,428 | INFO     | extracted standard info from prmon json
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | WARNING  | wrong length of table data, x=[1763736225.0, 1763736286.0, 1763736347.0, 1763736408.0], y=[1186.0, 579098.0, 442109.0, 254256.0] (must be same and length>=4)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | ..............................
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | . Timing measurements:
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . get job = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . initial setup = 4 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . payload setup = 17 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . stage-in = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . payload execution = 196 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . stage-out = 1 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . log creation = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | ..............................
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894277114/pilotlog.txt
[2025-11-21 06:50:02] 2025-11-21 14:49:00,468 | WARNING  | 
[2025-11-21 06:50:02] [begin log extracts]
[2025-11-21 06:50:02] - Log from pilotlog.txt -
[2025-11-21 06:50:02] 2025-11-21 14:49:00,428 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894277114/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,428 | INFO     | extracted standard info from prmon json
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 06:50:02] 2025-11-21 14:49:00,429 | WARNING  | wrong length of table data, x=[1763736225.0, 1763736286.0, 1763736347.0, 1763736408.0], y=[1186.0, 579098.0, 442109.0, 254256.0] (must be same and length>=4)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | ..............................
[2025-11-21 06:50:02] 2025-11-21 14:49:00,430 | INFO     | . Timing measurements:
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . get job = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . initial setup = 4 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . payload setup = 17 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . stage-in = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . payload execution = 196 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . stage-out = 1 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | . log creation = 0 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | ..............................
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 06:50:02] 2025-11-21 14:49:00,431 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894277114/pilotlog.txt
[2025-11-21 06:50:02] [end log extracts]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,468 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,469 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 06:50:02] 2025-11-21 14:49:00,766 | INFO     | 
[2025-11-21 06:50:02] 2025-11-21 14:49:00,767 | INFO     | job summary report
[2025-11-21 06:50:02] 2025-11-21 14:49:00,767 | INFO     | --------------------------------------------------
[2025-11-21 06:50:02] 2025-11-21 14:49:00,767 | INFO     | PanDA job id: 6894277114
[2025-11-21 06:50:02] 2025-11-21 14:49:00,767 | INFO     | task id: 47533967
[2025-11-21 06:50:02] 2025-11-21 14:49:00,767 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 06:46:45,859 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 06:50:02] 2025-11-21 14:49:00,767 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 06:50:02] 2025-11-21 14:49:00,767 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | pilot state: failed 
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | transexitcode: 65
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | exeerrorcode: 65
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | exitcode: 65
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | cpuconsumptiontime: 53 s
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | nevents: 0
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | neventsw: 0
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | pid: 20074
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | pgrp: 20074
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | corecount: 8
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | event service: False
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | sizes: {0: 2298753, 8: 2299015, 11: 2299043, 213: 2324485, 214: 2324461, 215: 2328779, 217: 2328935, 344: 2329129}
[2025-11-21 06:50:02] 2025-11-21 14:49:00,768 | INFO     | --------------------------------------------------
[2025-11-21 06:50:02] 2025-11-21 14:49:00,769 | INFO     | 
[2025-11-21 06:50:02] 2025-11-21 14:49:00,769 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 06:50:02] 2025-11-21 14:49:00,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,952 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,954 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,954 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,954 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,954 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,954 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 06:50:02] 2025-11-21 14:49:00,954 | INFO     | job 6894277114 has completed (purged errors)
[2025-11-21 06:50:02] 2025-11-21 14:49:00,954 | INFO     | overall cleanup function is called
[2025-11-21 06:50:02] 2025-11-21 14:49:01,994 | INFO     | --- collectZombieJob: --- 10, [20074]
[2025-11-21 06:50:02] 2025-11-21 14:49:01,994 | INFO     | zombie collector waiting for pid 20074
[2025-11-21 06:50:02] 2025-11-21 14:49:01,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 06:50:02] 2025-11-21 14:49:01,994 | INFO     | collected zombie processes
[2025-11-21 06:50:02] 2025-11-21 14:49:01,994 | INFO     | will attempt to kill all subprocesses of pid=20074
[2025-11-21 06:50:02] 2025-11-21 14:49:02,812 | INFO     | process IDs to be killed: [20074] (in reverse order)
[2025-11-21 06:50:02] 2025-11-21 14:49:02,886 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 06:50:02] 2025-11-21 14:49:02,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 06:50:02] 2025-11-21 14:49:02,941 | INFO     | did not find any defunct processes belonging to 20074
[2025-11-21 06:50:02] 2025-11-21 14:49:02,948 | INFO     | did not find any defunct processes belonging to 20074
[2025-11-21 06:50:02] 2025-11-21 14:49:02,949 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 06:50:02] 2025-11-21 14:49:02,949 | INFO     | ready for new job
[2025-11-21 06:50:02] 2025-11-21 14:49:02,949 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 06:50:02] 2025-11-21 14:49:02,952 | INFO     | ***************************************
[2025-11-21 06:50:02] 2025-11-21 14:49:02,952 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 06:50:02] 2025-11-21 14:49:02,952 | INFO     | ***************************************
[2025-11-21 06:50:02] 2025-11-21 14:49:02,952 | INFO     | 
[2025-11-21 06:50:02] 2025-11-21 14:49:02,954 | INFO     | architecture information:
[2025-11-21 06:50:02] 2025-11-21 14:49:02,975 | INFO     | executing command: cat /etc/os-release
[2025-11-21 06:50:02] 2025-11-21 14:49:02,988 | INFO     | cat /etc/os-release:
[2025-11-21 06:50:02] NAME="CentOS Linux"
[2025-11-21 06:50:02] VERSION="7 (Core)"
[2025-11-21 06:50:02] ID="centos"
[2025-11-21 06:50:02] ID_LIKE="rhel fedora"
[2025-11-21 06:50:02] VERSION_ID="7"
[2025-11-21 06:50:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 06:50:02] ANSI_COLOR="0;31"
[2025-11-21 06:50:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 06:50:02] HOME_URL="https://www.centos.org/"
[2025-11-21 06:50:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 06:50:02] 
[2025-11-21 06:50:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 06:50:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 06:50:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 06:50:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 06:50:02] 
[2025-11-21 06:50:02] 2025-11-21 14:49:02,989 | INFO     | ***************************************
[2025-11-21 06:50:02] 2025-11-21 14:49:03,492 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 06:50:02] 2025-11-21 14:49:03,530 | INFO     | sufficient remaining disk space (1042341167104 B)
[2025-11-21 06:50:02] 2025-11-21 14:49:03,531 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 06:50:02] 2025-11-21 14:49:03,531 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 06:50:02] 2025-11-21 14:49:03,531 | INFO     | update_server=False
[2025-11-21 06:50:02] 2025-11-21 14:49:03,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 06:50:02] 2025-11-21 14:49:03,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 06:50:02] 2025-11-21 14:49:03,593 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 06:50:02] 2025-11-21 14:49:03,593 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 06:50:02] 2025-11-21 14:49:03,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 06:50:02] 2025-11-21 14:49:03,593 | INFO     | will abort loop
[2025-11-21 06:50:02] 2025-11-21 14:49:03,689 | INFO     | all payload control threads have been joined
[2025-11-21 06:50:02] 2025-11-21 14:49:03,790 | INFO     | all data control threads have been joined
[2025-11-21 06:50:02] 2025-11-21 14:49:03,906 | INFO     | all job control threads have been joined
[2025-11-21 06:50:02] 2025-11-21 14:49:04,537 | INFO     | [job] retrieve thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:04,598 | INFO     | [job] job monitor thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:04,686 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:04,696 | INFO     | [payload] control thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:04,737 | INFO     | [job] validate thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:04,797 | INFO     | [data] control thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:04,912 | INFO     | [job] control thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:04,921 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:04,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:05,111 | INFO     | [data] copytool_in thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:05,539 | INFO     | [data] copytool_out thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:05,595 | INFO     | [payload] failed_post thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:05,650 | INFO     | [payload] validate_post thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:05,673 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:05,782 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 06:50:02] 2025-11-21 14:49:06,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 06:50:02] 2025-11-21 14:49:06,788 | INFO     | [job] queue monitor thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:10,083 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 06:50:02] 2025-11-21 14:49:32,651 | INFO     | PID=13421 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 06:50:02] 2025-11-21 14:49:32,652 | INFO     | .. there are 26 such processes running
[2025-11-21 06:50:02] 2025-11-21 14:49:32,652 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 06:50:02] 2025-11-21 14:49:32,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 06:50:02] 2025-11-21 14:49:32,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 06:50:02] 2025-11-21 14:49:56,892 | INFO     | [monitor] cgroup control has ended
[2025-11-21 06:50:02] 2025-11-21 14:49:57,354 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140380324538176)>', '<ExcThread(monitor, started 140379613533952)>']
[2025-11-21 06:50:02] 2025-11-21 14:49:57,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 06:50:02] 2025-11-21 14:49:57,799 | INFO     | [monitor] control thread has ended
[2025-11-21 06:50:02] 2025-11-21 14:50:02,380 | INFO     | all workflow threads have been joined
[2025-11-21 06:50:02] 2025-11-21 14:50:02,380 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 06:50:02] 2025-11-21 14:50:02,381 | INFO     | traces error code: 0
[2025-11-21 06:50:02] 2025-11-21 14:50:02,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 06:50:02] 2025-11-21 14:50:02,521 [wrapper] ==== pilot stdout END ====
[2025-11-21 06:50:02] 2025-11-21 14:50:02,526 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 06:50:02] 2025-11-21 14:50:02,529 [wrapper] pilotpid: 13421
[2025-11-21 06:50:02] 2025-11-21 14:50:02,531 [wrapper] Pilot exit status: 0
[2025-11-21 06:50:02] 2025-11-21 14:50:02,541 [wrapper] pandaids: 6894277114
[2025-11-21 06:50:02] 2025-11-21 14:50:02,583 [wrapper] cleanup supervisor_pilot   13427 13422
[2025-11-21 06:50:02] 2025-11-21 14:50:02,585 [wrapper] Test setup, not cleaning
[2025-11-21 06:50:02] 2025-11-21 14:50:02,592 [wrapper] apfmon messages muted
[2025-11-21 06:50:02] 2025-11-21 14:50:02,595 [wrapper] ==== wrapper stdout END ====
[2025-11-21 06:50:02] 2025-11-21 14:50:02,596 [wrapper] ==== wrapper stderr END ====
[2025-11-21 06:50:02]  *** Error codes and diagnostics ***
[2025-11-21 06:50:02]     "exeErrorCode": 65,
[2025-11-21 06:50:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 06:50:02]     "pilotErrorCode": 1305,
[2025-11-21 06:50:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 06:50:02]  *** Listing of results directory ***
[2025-11-21 06:50:02] total 404968
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc    576529 Nov 20 23:49 pilot3.tar.gz
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc      5112 Nov 20 23:51 queuedata.json
[2025-11-21 06:50:02] -rwx------. 1 boinc boinc     36292 Nov 20 23:52 runpilot2-wrapper.sh
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc       100 Nov 21 06:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 06:50:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 06:42 run_atlas
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc       105 Nov 21 06:42 job.xml
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc      6445 Nov 21 06:42 init_data.xml
[2025-11-21 06:50:02] -rw-r--r--. 2 boinc boinc 410442395 Nov 21 06:42 EVNT.47493127._002321.pool.root.1
[2025-11-21 06:50:02] -rw-r--r--. 2 boinc boinc     15847 Nov 21 06:42 start_atlas.sh
[2025-11-21 06:50:02] drwxrwx--x. 2 boinc boinc      4096 Nov 21 06:42 shared
[2025-11-21 06:50:02] -rw-r--r--. 2 boinc boinc    590109 Nov 21 06:42 input.tar.gz
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc         0 Nov 21 06:42 boinc_lockfile
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc      2785 Nov 21 06:42 pandaJob.out
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc    989798 Nov 21 06:42 agis_schedconf.cvmfs.json
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc   1526164 Nov 21 06:42 agis_ddmendpoints.agis.ALL.json
[2025-11-21 06:50:02] drwx------. 5 boinc boinc      4096 Nov 21 06:42 pilot3
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc       524 Nov 21 06:46 boinc_task_state.xml
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc       995 Nov 21 06:46 memory_monitor_summary.json
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc     51071 Nov 21 06:46 log.47533967._002929.job.log.tgz.1
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc        95 Nov 21 06:49 pilot_heartbeat.json
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc     10333 Nov 21 06:49 heartbeat.json
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc      8192 Nov 21 06:49 boinc_mmap_file
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc        23 Nov 21 06:49 wrapper_checkpoint.txt
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc      5007 Nov 21 06:50 pilotlog.txt
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc    112913 Nov 21 06:50 log.47533967._002929.job.log.1
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc       186 Nov 21 06:50 output.list
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc       620 Nov 21 06:50 runtime_log
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc    184320 Nov 21 06:50 result.tar.gz
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc      8634 Nov 21 06:50 runtime_log.err
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc       645 Nov 21 06:50 LVDNDmO7ag8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmSHKDmh0SQZm.diag
[2025-11-21 06:50:02] -rw-r--r--. 1 boinc boinc     22512 Nov 21 06:50 stderr.txt
[2025-11-21 06:50:02] No HITS result produced
[2025-11-21 06:50:02]  *** Contents of shared directory: ***
[2025-11-21 06:50:02] total 401604
[2025-11-21 06:50:02] -rw-r--r--. 2 boinc boinc 410442395 Nov 21 06:42 ATLAS.root_0
[2025-11-21 06:50:02] -rw-r--r--. 2 boinc boinc     15847 Nov 21 06:42 start_atlas.sh
[2025-11-21 06:50:02] -rw-r--r--. 2 boinc boinc    590109 Nov 21 06:42 input.tar.gz
[2025-11-21 06:50:02] -rw-------. 1 boinc boinc    184320 Nov 21 06:50 result.tar.gz
06:50:04 (9740): run_atlas exited; CPU time 56.687639
06:50:04 (9740): called boinc_finish(0)

</stderr_txt>
]]>

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