Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:55:11 (1342298): wrapper (7.7.26015): starting
09:55:11 (1342298): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 09:55:11] Arguments: --nthreads 8
[2025-11-21 09:55:11] Threads: 8
[2025-11-21 09:55:11] Checking for CVMFS
[2025-11-21 09:55:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 09:55:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 09:55:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 09:55:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 09:55:11] 2.13.2.0 34200 26662 200592 153131 2 82 22444672 40960001 4710 16776704 0 19751913 99.686 12510381 28678 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 09:55:11] CVMFS is ok
[2025-11-21 09:55:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 09:55:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 09:55:11] Further information can be found at the LHC@home message board.
[2025-11-21 09:55:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 09:55:11] Checking for apptainer binary...
[2025-11-21 09:55:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 09:55:11] Running /usr/bin/apptainer --version
[2025-11-21 09:55:11] apptainer version 1.4.4-1.el9
[2025-11-21 09:55:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 09:55:11] c-211-13.aglt2.org
[2025-11-21 09:55:11] apptainer works
[2025-11-21 09:55:11] Set ATHENA_PROC_NUMBER=8
[2025-11-21 09:55:11] Set ATHENA_CORE_NUMBER=8
[2025-11-21 09:55:11] Starting ATLAS job with PandaID=6893879906
[2025-11-21 09:55:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:58:03]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:58:03] 2025-11-23 01:56:47,693 | INFO     | sum of square deviations: 2738296286152.2974
[2025-11-22 20:58:03] 2025-11-23 01:56:47,846 | INFO     | sum of deviations: 6337948880767.823
[2025-11-22 20:58:03] 2025-11-23 01:56:47,847 | INFO     | mean x: 1763799972.4441218
[2025-11-22 20:58:03] 2025-11-23 01:56:47,847 | INFO     | mean y: 2958634.2583454284
[2025-11-22 20:58:03] 2025-11-23 01:56:47,847 | INFO     | intersect: -4079460831.371678
[2025-11-22 20:58:03] 2025-11-23 01:56:47,851 | INFO     | chi2: 9.74732091867643
[2025-11-22 20:58:03] 2025-11-23 01:56:47,854 | INFO     | sum of square deviations: 2718479623764.588
[2025-11-22 20:58:03] 2025-11-23 01:56:48,019 | INFO     | sum of deviations: 7031032489234.013
[2025-11-22 20:58:03] 2025-11-23 01:56:48,019 | INFO     | mean x: 1763799819.9738119
[2025-11-22 20:58:03] 2025-11-23 01:56:48,019 | INFO     | mean y: 2963966.277885548
[2025-11-22 20:58:03] 2025-11-23 01:56:48,019 | INFO     | intersect: -4558899852.869465
[2025-11-22 20:58:03] 2025-11-23 01:56:48,023 | INFO     | chi2: 6.767823202384089
[2025-11-22 20:58:03] 2025-11-23 01:56:48,023 | INFO     | current chi2=6.767823202384089 (change=30.56735015857999 %)
[2025-11-22 20:58:03] 2025-11-23 01:56:48,027 | INFO     | sum of square deviations: 2698758869660.2227
[2025-11-22 20:58:03] 2025-11-23 01:56:48,160 | INFO     | sum of deviations: 7757975704104.847
[2025-11-22 20:58:03] 2025-11-23 01:56:48,161 | INFO     | mean x: 1763799667.5036461
[2025-11-22 20:58:03] 2025-11-23 01:56:48,161 | INFO     | mean y: 2969587.0194457946
[2025-11-22 20:58:03] 2025-11-23 01:56:48,161 | INFO     | intersect: -5067329623.937577
[2025-11-22 20:58:03] 2025-11-23 01:56:48,164 | INFO     | chi2: 3.5684159317754083
[2025-11-22 20:58:03] 2025-11-23 01:56:48,165 | INFO     | current chi2=3.5684159317754083 (change=47.27380096870189 %)
[2025-11-22 20:58:03] 2025-11-23 01:56:48,168 | INFO     | sum of square deviations: 2679133666921.743
[2025-11-22 20:58:03] 2025-11-23 01:56:48,322 | INFO     | time since job start (126086s) is within the limit (172800.0s)
[2025-11-22 20:58:03] 2025-11-23 01:56:48,351 | INFO     | sum of deviations: 8121630559303.818
[2025-11-22 20:58:03] 2025-11-23 01:56:48,382 | INFO     | mean x: 1763799515.0331385
[2025-11-22 20:58:03] 2025-11-23 01:56:48,382 | INFO     | mean y: 2972410.6496101366
[2025-11-22 20:58:03] 2025-11-23 01:56:48,382 | INFO     | intersect: -5343878408.569638
[2025-11-22 20:58:03] 2025-11-23 01:56:48,385 | INFO     | chi2: 2.531204456717152
[2025-11-22 20:58:03] 2025-11-23 01:56:48,385 | INFO     | current chi2=2.531204456717152 (change=29.066439980336273 %)
[2025-11-22 20:58:03] 2025-11-23 01:56:48,388 | INFO     | sum of square deviations: 2659603031418.544
[2025-11-22 20:58:03] 2025-11-23 01:56:48,531 | INFO     | sum of deviations: 8258075302369.832
[2025-11-22 20:58:03] 2025-11-23 01:56:48,532 | INFO     | mean x: 1763799362.5593553
[2025-11-22 20:58:03] 2025-11-23 01:56:48,532 | INFO     | mean y: 2973475.865657059
[2025-11-22 20:58:03] 2025-11-23 01:56:48,532 | INFO     | intersect: -5473628777.260165
[2025-11-22 20:58:03] 2025-11-23 01:56:48,535 | INFO     | chi2: 2.334294333690462
[2025-11-22 20:58:03] 2025-11-23 01:56:48,535 | INFO     | current chi2=2.334294333690462 (change=7.779305322576464 %)
[2025-11-22 20:58:03] 2025-11-23 01:56:48,536 | INFO     | right removable region: 2046
[2025-11-22 20:58:03] 2025-11-23 01:56:48,539 | INFO     | sum of square deviations: 2718464185030.5835
[2025-11-22 20:58:03] 2025-11-23 01:56:48,882 | INFO     | sum of deviations: 5826154524213.089
[2025-11-22 20:58:03] 2025-11-23 01:56:48,882 | INFO     | mean x: 1763800124.9738119
[2025-11-22 20:58:03] 2025-11-23 01:56:48,882 | INFO     | mean y: 2962567.538797284
[2025-11-22 20:58:03] 2025-11-23 01:56:48,882 | INFO     | intersect: -3777176282.3714786
[2025-11-22 20:58:03] 2025-11-23 01:56:48,890 | INFO     | chi2: 7.874130660878693
[2025-11-22 20:58:03] 2025-11-23 01:56:48,890 | INFO     | current chi2=7.874130660878693 (change=19.217488307054666 %)
[2025-11-22 20:58:03] 2025-11-23 01:56:48,890 | INFO     | left removable region: 10
[2025-11-22 20:58:03] 2025-11-23 01:56:48,895 | INFO     | sum of square deviations: 2616941805854.0503
[2025-11-22 20:58:03] 2025-11-23 01:56:49,118 | INFO     | sum of deviations: 7614956183771.014
[2025-11-22 20:58:03] 2025-11-23 01:56:49,119 | INFO     | mean x: 1763799637.123281
[2025-11-22 20:58:03] 2025-11-23 01:56:49,119 | INFO     | mean y: 2978723.681237721
[2025-11-22 20:58:03] 2025-11-23 01:56:49,119 | INFO     | intersect: -5129446049.234815
[2025-11-22 20:58:03] 2025-11-23 01:56:49,123 | INFO     | chi2: 0.37398721293464426
[2025-11-22 20:58:03] 2025-11-23 01:56:49,124 | INFO     | current memory leak: 2.91 B/s (using 2036 data points, chi2=0.37)
[2025-11-22 20:58:03] 2025-11-23 01:56:49,126 | INFO     | could have reported an average CPU frequency of 2615 MHz (71 samples)
[2025-11-22 20:58:03] 2025-11-23 01:56:49,127 | INFO     | ..............................
[2025-11-22 20:58:03] 2025-11-23 01:56:49,127 | INFO     | . Timing measurements:
[2025-11-22 20:58:03] 2025-11-23 01:56:49,127 | INFO     | . get job = 0 s
[2025-11-22 20:58:03] 2025-11-23 01:56:49,127 | INFO     | . initial setup = 2 s
[2025-11-22 20:58:03] 2025-11-23 01:56:49,127 | INFO     | . payload setup = 5 s
[2025-11-22 20:58:03] 2025-11-23 01:56:49,127 | INFO     | . stage-in = 0 s
[2025-11-22 20:58:03] 2025-11-23 01:56:49,127 | INFO     | . payload execution = 126043 s
[2025-11-22 20:58:03] 2025-11-23 01:56:49,128 | INFO     | . stage-out = 5 s
[2025-11-22 20:58:03] 2025-11-23 01:56:49,128 | INFO     | . log creation = 1 s
[2025-11-22 20:58:03] 2025-11-23 01:56:49,128 | INFO     | ..............................
[2025-11-22 20:58:03] 2025-11-23 01:56:49,249 | INFO     | 
[2025-11-22 20:58:03] 2025-11-23 01:56:49,249 | INFO     | job summary report
[2025-11-22 20:58:03] 2025-11-23 01:56:49,249 | INFO     | --------------------------------------------------
[2025-11-22 20:58:03] 2025-11-23 01:56:49,249 | INFO     | PanDA job id: 6893879906
[2025-11-22 20:58:03] 2025-11-23 01:56:49,249 | INFO     | task id: 47523449
[2025-11-22 20:58:03] 2025-11-23 01:56:49,250 | INFO     | errors: (none)
[2025-11-22 20:58:03] 2025-11-23 01:56:49,250 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:58:03] 2025-11-23 01:56:49,250 | INFO     | pilot state: finished 
[2025-11-22 20:58:03] 2025-11-23 01:56:49,250 | INFO     | transexitcode: 0
[2025-11-22 20:58:03] 2025-11-23 01:56:49,250 | INFO     | exeerrorcode: 0
[2025-11-22 20:58:03] 2025-11-23 01:56:49,250 | INFO     | exeerrordiag: 
[2025-11-22 20:58:03] 2025-11-23 01:56:49,250 | INFO     | exitcode: 0
[2025-11-22 20:58:03] 2025-11-23 01:56:49,250 | INFO     | exitmsg: OK
[2025-11-22 20:58:03] 2025-11-23 01:56:49,251 | INFO     | cpuconsumptiontime: 349235 s
[2025-11-22 20:58:03] 2025-11-23 01:56:49,252 | INFO     | nevents: 1000
[2025-11-22 20:58:03] 2025-11-23 01:56:49,252 | INFO     | neventsw: 0
[2025-11-22 20:58:03] 2025-11-23 01:56:49,253 | INFO     | pid: 1352307
[2025-11-22 20:58:03] 2025-11-23 01:56:49,253 | INFO     | pgrp: 1352307
[2025-11-22 20:58:03] 2025-11-23 01:56:49,254 | INFO     | corecount: 8
[2025-11-22 20:58:03] 2025-11-23 01:56:49,254 | INFO     | event service: False
[2025-11-22 20:58:03] 2025-11-23 01:56:49,254 | INFO     | sizes: {0: 2298528, 1: 2298783, 5: 2299045, 12: 2299101, 126052: 2379567, 126059: 2388745, 126072: 2388935}
[2025-11-22 20:58:03] 2025-11-23 01:56:49,254 | INFO     | --------------------------------------------------
[2025-11-22 20:58:03] 2025-11-23 01:56:49,264 | INFO     | 
[2025-11-22 20:58:03] 2025-11-23 01:56:49,264 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-22 20:58:03] 2025-11-23 01:56:49,459 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,460 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,460 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,460 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,460 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,460 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,461 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,461 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,461 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,461 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,461 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,461 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,461 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,462 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,462 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,462 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,462 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,462 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:58:03] 2025-11-23 01:56:49,462 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,462 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:58:03] 2025-11-23 01:56:49,463 | INFO     | job 6893879906 has completed (purged errors)
[2025-11-22 20:58:03] 2025-11-23 01:56:49,463 | INFO     | overall cleanup function is called
[2025-11-22 20:58:03] 2025-11-23 01:56:49,957 | INFO     | PID=1345957 has CPU usage=19.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 20:58:03] 2025-11-23 01:56:49,958 | INFO     | .. there are 11 such processes running
[2025-11-22 20:58:03] 2025-11-23 01:56:50,491 | INFO     | --- collectZombieJob: --- 10, [1352307]
[2025-11-22 20:58:03] 2025-11-23 01:56:50,492 | INFO     | zombie collector waiting for pid 1352307
[2025-11-22 20:58:03] 2025-11-23 01:56:50,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:58:03] 2025-11-23 01:56:50,492 | INFO     | collected zombie processes
[2025-11-22 20:58:03] 2025-11-23 01:56:50,492 | INFO     | will attempt to kill all subprocesses of pid=1352307
[2025-11-22 20:58:03] 2025-11-23 01:56:50,918 | INFO     | process IDs to be killed: [1352307] (in reverse order)
[2025-11-22 20:58:03] 2025-11-23 01:56:51,014 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:58:03] 2025-11-23 01:56:51,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:58:03] 2025-11-23 01:56:51,027 | INFO     | did not find any defunct processes belonging to 1352307
[2025-11-22 20:58:03] 2025-11-23 01:56:51,039 | INFO     | did not find any defunct processes belonging to 1352307
[2025-11-22 20:58:03] 2025-11-23 01:56:51,041 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:58:03] 2025-11-23 01:56:51,042 | INFO     | ready for new job
[2025-11-22 20:58:03] 2025-11-23 01:56:51,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:58:03] 2025-11-23 01:56:51,051 | INFO     | ***************************************
[2025-11-22 20:58:03] 2025-11-23 01:56:51,051 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:58:03] 2025-11-23 01:56:51,052 | INFO     | ***************************************
[2025-11-22 20:58:03] 2025-11-23 01:56:51,052 | INFO     | 
[2025-11-22 20:58:03] 2025-11-23 01:56:51,055 | INFO     | architecture information:
[2025-11-22 20:58:03] 2025-11-23 01:56:51,056 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:58:03] 2025-11-23 01:56:51,073 | INFO     | cat /etc/os-release:
[2025-11-22 20:58:03] NAME="CentOS Linux"
[2025-11-22 20:58:03] VERSION="7 (Core)"
[2025-11-22 20:58:03] ID="centos"
[2025-11-22 20:58:03] ID_LIKE="rhel fedora"
[2025-11-22 20:58:03] VERSION_ID="7"
[2025-11-22 20:58:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:58:03] ANSI_COLOR="0;31"
[2025-11-22 20:58:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:58:03] HOME_URL="https://www.centos.org/"
[2025-11-22 20:58:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:58:03] 
[2025-11-22 20:58:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:58:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:58:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:58:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:58:03] 
[2025-11-22 20:58:03] 2025-11-23 01:56:51,074 | INFO     | ***************************************
[2025-11-22 20:58:03] 2025-11-23 01:56:51,577 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-22 20:58:03] 2025-11-23 01:56:51,631 | INFO     | sufficient remaining disk space (58827210752 B)
[2025-11-22 20:58:03] 2025-11-23 01:56:51,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:58:03] 2025-11-23 01:56:51,632 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:58:03] 2025-11-23 01:56:51,632 | INFO     | update_server=False
[2025-11-22 20:58:03] 2025-11-23 01:56:51,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:58:03] 2025-11-23 01:56:51,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:58:03] 2025-11-23 01:56:51,633 | INFO     | aborting loop
[2025-11-22 20:58:03] 2025-11-23 01:56:51,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:58:03] 2025-11-23 01:56:51,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:58:03] 2025-11-23 01:56:51,911 | INFO     | all job control threads have been joined
[2025-11-22 20:58:03] 2025-11-23 01:56:52,180 | INFO     | all payload control threads have been joined
[2025-11-22 20:58:03] 2025-11-23 01:56:52,637 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:52,638 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:52,720 | INFO     | all data control threads have been joined
[2025-11-22 20:58:03] 2025-11-23 01:56:52,895 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:52,917 | INFO     | [job] control thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:53,185 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:53,187 | INFO     | [payload] control thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:53,306 | INFO     | [job] validate thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:53,324 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:53,501 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:53,615 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:53,644 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:53,726 | INFO     | [data] control thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:54,022 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:54,113 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:54,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:58:03] 2025-11-23 01:56:55,301 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:56:55,645 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:58:03] 2025-11-23 01:57:22,611 | INFO     | PID=1345957 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:58:03] 2025-11-23 01:57:22,611 | INFO     | .. there are 11 such processes running
[2025-11-22 20:58:03] 2025-11-23 01:57:22,611 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:58:03] 2025-11-23 01:57:22,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:58:03] 2025-11-23 01:57:22,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:58:03] 2025-11-23 01:57:36,121 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:58:03] 2025-11-23 01:57:37,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139713234208576)>', '<ExcThread(monitor, started 139712459171584)>']
[2025-11-22 20:58:03] 2025-11-23 01:57:37,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:58:03] 2025-11-23 01:57:37,703 | INFO     | [monitor] control thread has ended
[2025-11-22 20:58:03] 2025-11-23 01:57:42,394 | INFO     | all workflow threads have been joined
[2025-11-22 20:58:03] 2025-11-23 01:57:42,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:58:03] 2025-11-23 01:57:42,395 | INFO     | traces error code: 0
[2025-11-22 20:58:03] 2025-11-23 01:57:42,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:58:03] 2025-11-23 01:57:42,645 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:58:03] 2025-11-23 01:57:42,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:58:03] 2025-11-23 01:57:42,711 [wrapper] pilotpid: 1345957
[2025-11-22 20:58:03] 2025-11-23 01:57:42,738 [wrapper] Pilot exit status: 0
[2025-11-22 20:58:03] 2025-11-23 01:57:42,828 [wrapper] pandaids: 6893879906
[2025-11-22 20:58:03] 2025-11-23 01:57:42,978 [wrapper] cleanup supervisor_pilot  561616 1345958
[2025-11-22 20:58:03] 2025-11-23 01:57:42,997 [wrapper] Test setup, not cleaning
[2025-11-22 20:58:03] 2025-11-23 01:57:43,036 [wrapper] apfmon messages muted
[2025-11-22 20:58:03] 2025-11-23 01:57:43,055 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:58:03] 2025-11-23 01:57:43,060 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:58:03]  *** Error codes and diagnostics ***
[2025-11-22 20:58:03]     "exeErrorCode": 0,
[2025-11-22 20:58:03]     "exeErrorDiag": "",
[2025-11-22 20:58:03]     "pilotErrorCode": 0,
[2025-11-22 20:58:03]     "pilotErrorDiag": "",
[2025-11-22 20:58:03]  *** Listing of results directory ***
[2025-11-22 20:58:03] total 1336128
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 14:10 pilot3.tar.gz
[2025-11-22 20:58:03] -rwx------. 1 boincer umatlas     36292 Nov 20 14:22 runpilot2-wrapper.sh
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 14:22 queuedata.json
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas       100 Nov 21 09:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:58:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 09:55 run_atlas
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas       105 Nov 21 09:55 job.xml
[2025-11-22 20:58:03] -rw-r--r--. 2 boincer umatlas 410557514 Nov 21 09:55 EVNT.47493127._000830.pool.root.1
[2025-11-22 20:58:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 09:55 shared
[2025-11-22 20:58:03] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 09:55 input.tar.gz
[2025-11-22 20:58:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 09:55 start_atlas.sh
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas         0 Nov 21 09:55 boinc_lockfile
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 09:55 pandaJob.out
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas        57 Nov 21 09:55 setup.sh.local
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas    989798 Nov 21 09:55 agis_schedconf.cvmfs.json
[2025-11-22 20:58:03] drwx------. 5 boincer umatlas      4096 Nov 21 09:55 pilot3
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas       533 Nov 22 20:30 boinc_task_state.xml
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas 919404228 Nov 22 20:55 HITS.47523449._008298.pool.root.1
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas      1061 Nov 22 20:56 memory_monitor_summary.json
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas        95 Nov 22 20:56 pilot_heartbeat.json
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas   1526164 Nov 22 20:56 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas   2785744 Nov 22 20:56 log.47523449._008298.job.log.tgz.1
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas      8628 Nov 22 20:56 heartbeat.json
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas      6616 Nov 22 20:57 init_data.xml
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas      4824 Nov 22 20:57 pilotlog.txt
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas  14368088 Nov 22 20:57 log.47523449._008298.job.log.1
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas       353 Nov 22 20:57 output.list
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas       620 Nov 22 20:57 runtime_log
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas  17172480 Nov 22 20:57 result.tar.gz
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas      9344 Nov 22 20:57 runtime_log.err
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas       663 Nov 22 20:57 qsdMDmjPPg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWRIKDmozVDjm.diag
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 20:58 boinc_mmap_file
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas        29 Nov 22 20:58 wrapper_checkpoint.txt
[2025-11-22 20:58:03] -rw-r--r--. 1 boincer umatlas     21264 Nov 22 20:58 stderr.txt
[2025-11-22 20:58:03] HITS file was successfully produced:
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas 919404228 Nov 22 20:55 shared/HITS.pool.root.1
[2025-11-22 20:58:03]  *** Contents of shared directory: ***
[2025-11-22 20:58:03] total 1316168
[2025-11-22 20:58:03] -rw-r--r--. 2 boincer umatlas 410557514 Nov 21 09:55 ATLAS.root_0
[2025-11-22 20:58:03] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 09:55 input.tar.gz
[2025-11-22 20:58:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 09:55 start_atlas.sh
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas 919404228 Nov 22 20:55 HITS.pool.root.1
[2025-11-22 20:58:03] -rw-------. 1 boincer umatlas  17172480 Nov 22 20:57 result.tar.gz
20:58:05 (1342298): run_atlas exited; CPU time 352121.208509
20:58:05 (1342298): called boinc_finish(0)

</stderr_txt>
]]>

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