Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:31:31 (3928450): wrapper (7.7.26015): starting
15:31:31 (3928450): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 15:31:31] Arguments: --nthreads 4
[2025-11-21 15:31:31] Threads: 4
[2025-11-21 15:31:31] Checking for CVMFS
[2025-11-21 15:31:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 15:31:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 15:31:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 15:31:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 15:31:31] 2.9.2.0 1896247 4953 96856 153128 3 90 33541348 36864001 0 130560 0 6058378 99.962 466310 6513 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 15:31:31] CVMFS is ok
[2025-11-21 15:31:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 15:31:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 15:31:31] Further information can be found at the LHC@home message board.
[2025-11-21 15:31:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 15:31:31] Checking for apptainer binary...
[2025-11-21 15:31:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 15:31:31] Running /usr/bin/apptainer --version
[2025-11-21 15:31:31] apptainer version 1.4.1-1.1
[2025-11-21 15:31:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 15:31:31] cosA131
[2025-11-21 15:31:31] apptainer works
[2025-11-21 15:31:31] Set ATHENA_PROC_NUMBER=4
[2025-11-21 15:31:31] Set ATHENA_CORE_NUMBER=4
[2025-11-21 15:31:31] Starting ATLAS job with PandaID=6894246210
[2025-11-21 15:31:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 15:41:46]  *** The last 200 lines of the pilot log: ***
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | WARNING  | wrong length of table data, x=[1763735523.0, 1763735584.0, 1763735645.0, 1763735706.0, 1763735767.0, 1763735828.0, 1763735889.0], y=[2436.0, 839755.0, 1065825.0, 1
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | could have reported an average CPU frequency of 3605 MHz (4 samples)
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | ..............................
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . Timing measurements:
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . get job = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . initial setup = 1 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . payload setup = 4 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . stage-in = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . payload execution = 404 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . stage-out = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . log creation = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | ..............................
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6894246210/pilotlog.txt
[2025-11-21 15:41:46] 2025-11-21 14:40:50,194 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 15:41:46] - Log from pilotlog.txt -
[2025-11-21 15:41:46] 2025-11-21 14:40:50,176 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 15:41:46] 2025-11-21 14:40:50,178 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3304.6547499999997
[2025-11-21 15:41:46] 2025-11-21 14:40:50,179 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6894246210/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 15:41:46] 2025-11-21 14:40:50,179 | INFO     | extracted standard info from prmon json
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | WARNING  | wrong length of table data, x=[1763735523.0, 1763735584.0, 1763735645.0, 1763735706.0, 1763735767.0, 1763735828.0, 1763735889.0], y=[2436.0, 839755.0, 1065825.0, 1
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | could have reported an average CPU frequency of 3605 MHz (4 samples)
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | ..............................
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . Timing measurements:
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . get job = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . initial setup = 1 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . payload setup = 4 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . stage-in = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . payload execution = 404 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . stage-out = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . log creation = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | ..............................
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6894246210/pilotlog.txt
[2025-11-21 15:41:46] 2025-11-21 14:40:50,195 | WARNING  | 
[2025-11-21 15:41:46] [begin log extracts]
[2025-11-21 15:41:46] - Log from pilotlog.txt -
[2025-11-21 15:41:46] 2025-11-21 14:40:50,176 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 15:41:46] 2025-11-21 14:40:50,178 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3304.6547499999997
[2025-11-21 15:41:46] 2025-11-21 14:40:50,179 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6894246210/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 15:41:46] 2025-11-21 14:40:50,179 | INFO     | extracted standard info from prmon json
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | WARNING  | wrong length of table data, x=[1763735523.0, 1763735584.0, 1763735645.0, 1763735706.0, 1763735767.0, 1763735828.0, 1763735889.0], y=[2436.0, 839755.0, 1065825.0, 1
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | could have reported an average CPU frequency of 3605 MHz (4 samples)
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | ..............................
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . Timing measurements:
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . get job = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . initial setup = 1 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,180 | INFO     | . payload setup = 4 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . stage-in = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . payload execution = 404 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . stage-out = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | . log creation = 0 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | ..............................
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 15:41:46] 2025-11-21 14:40:50,181 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6894246210/pilotlog.txt
[2025-11-21 15:41:46] [end log extracts]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,195 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 15:41:46] 2025-11-21 14:40:50,195 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 15:41:46] 2025-11-21 14:40:50,235 | INFO     | 
[2025-11-21 15:41:46] 2025-11-21 14:40:50,235 | INFO     | job summary report
[2025-11-21 15:41:46] 2025-11-21 14:40:50,235 | INFO     | --------------------------------------------------
[2025-11-21 15:41:46] 2025-11-21 14:40:50,235 | INFO     | PanDA job id: 6894246210
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | task id: 47533967
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 14:38:39,965 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | pilot state: failed 
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | transexitcode: 65
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | exeerrorcode: 65
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 154395004; Curre
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | exitcode: 65
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 154395004; Current al
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | cpuconsumptiontime: 96 s
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | nevents: 0
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | neventsw: 0
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | pid: 3938850
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | pgrp: 3938850
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | corecount: 4
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | event service: False
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | sizes: {0: 2298808, 1: 2298808, 4: 2299098, 11: 2299126, 412: 2329376, 415: 2329376, 536: 2329750}
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | --------------------------------------------------
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | 
[2025-11-21 15:41:46] 2025-11-21 14:40:50,236 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 15:41:46] 2025-11-21 14:40:50,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,257 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 15:41:46] 2025-11-21 14:40:50,257 | INFO     | job 6894246210 has completed (purged errors)
[2025-11-21 15:41:46] 2025-11-21 14:40:50,257 | INFO     | overall cleanup function is called
[2025-11-21 15:41:46] 2025-11-21 14:40:51,265 | INFO     | --- collectZombieJob: --- 10, [3938850]
[2025-11-21 15:41:46] 2025-11-21 14:40:51,265 | INFO     | zombie collector waiting for pid 3938850
[2025-11-21 15:41:46] 2025-11-21 14:40:51,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 15:41:46] 2025-11-21 14:40:51,265 | INFO     | collected zombie processes
[2025-11-21 15:41:46] 2025-11-21 14:40:51,265 | INFO     | will attempt to kill all subprocesses of pid=3938850
[2025-11-21 15:41:46] 2025-11-21 14:40:51,318 | INFO     | process IDs to be killed: [3938850] (in reverse order)
[2025-11-21 15:41:46] 2025-11-21 14:40:51,355 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 15:41:46] 2025-11-21 14:40:51,355 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 15:41:46] 2025-11-21 14:40:51,358 | INFO     | did not find any defunct processes belonging to 3938850
[2025-11-21 15:41:46] 2025-11-21 14:40:51,359 | INFO     | did not find any defunct processes belonging to 3938850
[2025-11-21 15:41:46] 2025-11-21 14:40:51,360 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 15:41:46] 2025-11-21 14:40:51,360 | INFO     | ready for new job
[2025-11-21 15:41:46] 2025-11-21 14:40:51,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 15:41:46] 2025-11-21 14:40:51,361 | INFO     | ***************************************
[2025-11-21 15:41:46] 2025-11-21 14:40:51,361 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 15:41:46] 2025-11-21 14:40:51,361 | INFO     | ***************************************
[2025-11-21 15:41:46] 2025-11-21 14:40:51,361 | INFO     | 
[2025-11-21 15:41:46] 2025-11-21 14:40:51,361 | INFO     | architecture information:
[2025-11-21 15:41:46] 2025-11-21 14:40:51,362 | INFO     | executing command: cat /etc/os-release
[2025-11-21 15:41:46] 2025-11-21 14:40:51,375 | INFO     | cat /etc/os-release:
[2025-11-21 15:41:46] NAME="CentOS Linux"
[2025-11-21 15:41:46] VERSION="7 (Core)"
[2025-11-21 15:41:46] ID="centos"
[2025-11-21 15:41:46] ID_LIKE="rhel fedora"
[2025-11-21 15:41:46] VERSION_ID="7"
[2025-11-21 15:41:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 15:41:46] ANSI_COLOR="0;31"
[2025-11-21 15:41:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 15:41:46] HOME_URL="https://www.centos.org/"
[2025-11-21 15:41:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 15:41:46] 
[2025-11-21 15:41:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 15:41:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 15:41:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 15:41:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 15:41:46] 
[2025-11-21 15:41:46] 2025-11-21 14:40:51,376 | INFO     | ***************************************
[2025-11-21 15:41:46] 2025-11-21 14:40:51,879 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 15:41:46] 2025-11-21 14:40:51,896 | INFO     | sufficient remaining disk space (326530760704 B)
[2025-11-21 15:41:46] 2025-11-21 14:40:51,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 15:41:46] 2025-11-21 14:40:51,897 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 15:41:46] 2025-11-21 14:40:51,897 | INFO     | update_server=False
[2025-11-21 15:41:46] 2025-11-21 14:40:51,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 15:41:46] 2025-11-21 14:40:51,897 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:41:46] 2025-11-21 14:40:52,036 | INFO     | all data control threads have been joined
[2025-11-21 15:41:46] 2025-11-21 14:40:52,139 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:41:46] 2025-11-21 14:40:52,139 | INFO     | aborting loop
[2025-11-21 15:41:46] 2025-11-21 14:40:52,412 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 15:41:46] 2025-11-21 14:40:52,572 | INFO     | all payload control threads have been joined
[2025-11-21 15:41:46] 2025-11-21 14:40:52,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 15:41:46] 2025-11-21 14:40:52,902 | INFO     | [job] retrieve thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:52,903 | INFO     | [job] queue monitor thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,041 | INFO     | [data] control thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,081 | INFO     | [data] copytool_in thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,107 | INFO     | all job control threads have been joined
[2025-11-21 15:41:46] 2025-11-21 14:40:53,145 | INFO     | [job] job monitor thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,373 | INFO     | [payload] validate_post thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,578 | INFO     | [payload] control thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,754 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,788 | INFO     | [job] validate thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:53,949 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:54,030 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:54,113 | INFO     | [job] control thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:54,221 | INFO     | [payload] failed_post thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:54,417 | INFO     | [data] copytool_out thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:40:56,588 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 15:41:46] 2025-11-21 14:41:22,353 | INFO     | PID=3932238 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 15:41:46] 2025-11-21 14:41:22,353 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 15:41:46] 2025-11-21 14:41:22,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 15:41:46] 2025-11-21 14:41:22,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 15:41:46] 2025-11-21 14:41:39,849 | INFO     | [monitor] cgroup control has ended
[2025-11-21 15:41:46] 2025-11-21 14:41:41,657 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139731994879808)>', '<ExcThread(monitor, started 139730821822208)>']
[2025-11-21 15:41:46] 2025-11-21 14:41:42,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 15:41:46] 2025-11-21 14:41:42,460 | INFO     | [monitor] control thread has ended
[2025-11-21 15:41:46] 2025-11-21 14:41:46,681 | INFO     | all workflow threads have been joined
[2025-11-21 15:41:46] 2025-11-21 14:41:46,681 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 15:41:46] 2025-11-21 14:41:46,681 | INFO     | traces error code: 0
[2025-11-21 15:41:46] 2025-11-21 14:41:46,682 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 15:41:46] 2025-11-21 14:41:46,761 [wrapper] ==== pilot stdout END ====
[2025-11-21 15:41:46] 2025-11-21 14:41:46,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 15:41:46] 2025-11-21 14:41:46,769 [wrapper] pilotpid: 3932238
[2025-11-21 15:41:46] 2025-11-21 14:41:46,773 [wrapper] Pilot exit status: 0
[2025-11-21 15:41:46] 2025-11-21 14:41:46,785 [wrapper] pandaids: 6894246210
[2025-11-21 15:41:46] 2025-11-21 14:41:46,810 [wrapper] cleanup supervisor_pilot 3932244 3932239
[2025-11-21 15:41:46] 2025-11-21 14:41:46,814 [wrapper] Test setup, not cleaning
[2025-11-21 15:41:46] 2025-11-21 14:41:46,818 [wrapper] apfmon messages muted
[2025-11-21 15:41:46] 2025-11-21 14:41:46,822 [wrapper] ==== wrapper stdout END ====
[2025-11-21 15:41:46] 2025-11-21 14:41:46,825 [wrapper] ==== wrapper stderr END ====
[2025-11-21 15:41:46]  *** Error codes and diagnostics ***
[2025-11-21 15:41:46]     "exeErrorCode": 65,
[2025-11-21 15:41:46]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 154395004; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2025-11-21 15:41:46]     "pilotErrorCode": 1305,
[2025-11-21 15:41:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 154395004; Current algorit",
[2025-11-21 15:41:46]  *** Listing of results directory ***
[2025-11-21 15:41:46] total 404348
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc    576529 Nov 21 02:08 pilot3.tar.gz
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc      5112 Nov 21 02:36 queuedata.json
[2025-11-21 15:41:46] -rwx------ 1 boinc boinc     36292 Nov 21 02:38 runpilot2-wrapper.sh
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc       100 Nov 21 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 15:41:46] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 15:31 run_atlas
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc       105 Nov 21 15:31 job.xml
[2025-11-21 15:41:46] -rw-r--r-- 2 boinc boinc 409072541 Nov 21 15:31 EVNT.47493127._002091.pool.root.1
[2025-11-21 15:41:46] -rw-r--r-- 2 boinc boinc    590108 Nov 21 15:31 input.tar.gz
[2025-11-21 15:41:46] -rw-r--r-- 2 boinc boinc     15847 Nov 21 15:31 start_atlas.sh
[2025-11-21 15:41:46] drwxrwx--x 2 boinc boinc      4096 Nov 21 15:31 shared
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc         0 Nov 21 15:31 boinc_setup_complete
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc      6379 Nov 21 15:31 init_data.xml
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc         0 Nov 21 15:31 boinc_lockfile
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc      2785 Nov 21 15:31 pandaJob.out
[2025-11-21 15:41:46] -rw------- 1 boinc boinc    989817 Nov 21 15:31 agis_schedconf.cvmfs.json
[2025-11-21 15:41:46] -rw------- 1 boinc boinc   1526164 Nov 21 15:31 agis_ddmendpoints.agis.ALL.json
[2025-11-21 15:41:46] drwx------ 5 boinc boinc      4096 Nov 21 15:31 pilot3
[2025-11-21 15:41:46] -rw------- 1 boinc boinc       999 Nov 21 15:38 memory_monitor_summary.json
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc       526 Nov 21 15:38 boinc_task_state.xml
[2025-11-21 15:41:46] -rw------- 1 boinc boinc    388706 Nov 21 15:38 log.47533967._000626.job.log.tgz.1
[2025-11-21 15:41:46] -rw------- 1 boinc boinc        95 Nov 21 15:40 pilot_heartbeat.json
[2025-11-21 15:41:46] -rw------- 1 boinc boinc     10155 Nov 21 15:40 heartbeat.json
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc      8192 Nov 21 15:41 boinc_mmap_file
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc        24 Nov 21 15:41 wrapper_checkpoint.txt
[2025-11-21 15:41:46] -rw------- 1 boinc boinc      4752 Nov 21 15:41 pilotlog.txt
[2025-11-21 15:41:46] -rw------- 1 boinc boinc    139583 Nov 21 15:41 log.47533967._000626.job.log.1
[2025-11-21 15:41:46] -rw------- 1 boinc boinc       186 Nov 21 15:41 output.list
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc       620 Nov 21 15:41 runtime_log
[2025-11-21 15:41:46] -rw------- 1 boinc boinc    552960 Nov 21 15:41 result.tar.gz
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc      8749 Nov 21 15:41 runtime_log.err
[2025-11-21 15:41:46] -rw------- 1 boinc boinc       651 Nov 21 15:41 O7nNDmXHVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1oIKDmVa9fvm.diag
[2025-11-21 15:41:46] -rw-r--r-- 1 boinc boinc     22737 Nov 21 15:41 stderr.txt
[2025-11-21 15:41:46] No HITS result produced
[2025-11-21 15:41:46]  *** Contents of shared directory: ***
[2025-11-21 15:41:46] total 400628
[2025-11-21 15:41:46] -rw-r--r-- 2 boinc boinc 409072541 Nov 21 15:31 ATLAS.root_0
[2025-11-21 15:41:46] -rw-r--r-- 2 boinc boinc    590108 Nov 21 15:31 input.tar.gz
[2025-11-21 15:41:46] -rw-r--r-- 2 boinc boinc     15847 Nov 21 15:31 start_atlas.sh
[2025-11-21 15:41:46] -rw------- 1 boinc boinc    552960 Nov 21 15:41 result.tar.gz
15:41:48 (3928450): run_atlas exited; CPU time 87.199845
15:41:48 (3928450): called boinc_finish(0)

</stderr_txt>
]]>

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