Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:51:49 (4179864): wrapper (7.7.26015): starting
09:51:49 (4179864): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 09:51:49] Arguments: --nthreads 8
[2025-11-21 09:51:49] Threads: 8
[2025-11-21 09:51:49] Checking for CVMFS
[2025-11-21 09:51:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 09:51:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 09:51:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 09:51:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 09:51:49] 2.13.2.0 9388 26788 179440 153131 1 81 36345022 39288832 3768 16776704 0 16010513 99.638 11991686 34260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 09:51:49] CVMFS is ok
[2025-11-21 09:51:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 09:51:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 09:51:49] Further information can be found at the LHC@home message board.
[2025-11-21 09:51:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 09:51:49] Checking for apptainer binary...
[2025-11-21 09:51:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 09:51:49] Running /usr/bin/apptainer --version
[2025-11-21 09:51:49] apptainer version 1.4.4-1.el9
[2025-11-21 09:51:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 09:51:49] c-210-25.aglt2.org
[2025-11-21 09:51:49] apptainer works
[2025-11-21 09:51:49] Set ATHENA_PROC_NUMBER=8
[2025-11-21 09:51:49] Set ATHENA_CORE_NUMBER=8
[2025-11-21 09:51:49] Starting ATLAS job with PandaID=6893880777
[2025-11-21 09:51:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 08:36:42]  *** The last 200 lines of the pilot log: ***
[2025-11-23 08:36:42] 2025-11-23 13:35:37,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:36:42] 2025-11-23 13:35:38,342 | INFO     | time since job start (168218s) is within the limit (172800.0s)
[2025-11-23 08:36:42] 2025-11-23 13:35:40,240 | INFO     | monitor loop #9452: job 0:6893880777 is in state 'finished'
[2025-11-23 08:36:42] 2025-11-23 13:35:40,240 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:36:42] 2025-11-23 13:35:40,370 | INFO     | time since job start (168220s) is within the limit (172800.0s)
[2025-11-23 08:36:42] 2025-11-23 13:35:41,947 | INFO     | PID=4183530 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 08:36:42] 2025-11-23 13:35:41,948 | INFO     | .. there are 8 such processes running
[2025-11-23 08:36:42] 2025-11-23 13:35:42,746 | INFO     | monitor loop #9453: job 0:6893880777 is in state 'finished'
[2025-11-23 08:36:42] 2025-11-23 13:35:42,747 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:36:42] 2025-11-23 13:35:42,949 | INFO     | time since job start (168222s) is within the limit (172800.0s)
[2025-11-23 08:36:42] 2025-11-23 13:35:44,958 | INFO     | time since job start (168224s) is within the limit (172800.0s)
[2025-11-23 08:36:42] 2025-11-23 13:35:45,257 | INFO     | monitor loop #9454: job 0:6893880777 is in state 'finished'
[2025-11-23 08:36:42] 2025-11-23 13:35:45,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:36:42] 2025-11-23 13:35:46,970 | INFO     | time since job start (168226s) is within the limit (172800.0s)
[2025-11-23 08:36:42] 2025-11-23 13:35:47,762 | INFO     | monitor loop #9455: job 0:6893880777 is in state 'finished'
[2025-11-23 08:36:42] 2025-11-23 13:35:47,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:36:42] 2025-11-23 13:35:47,945 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 08:36:42] 2025-11-23 13:35:47,956 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.167250000001
[2025-11-23 08:36:42] 2025-11-23 13:35:48,049 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893880777/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 08:36:42] 2025-11-23 13:35:48,050 | INFO     | extracted standard info from prmon json
[2025-11-23 08:36:42] 2025-11-23 13:35:48,050 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 08:36:42] 2025-11-23 13:35:48,051 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 08:36:42] 2025-11-23 13:35:48,201 | INFO     | fitting pss+swap vs Time
[2025-11-23 08:36:42] 2025-11-23 13:35:48,205 | INFO     | sum of square deviations: 6498357595656.474
[2025-11-23 08:36:42] 2025-11-23 13:35:48,380 | INFO     | sum of deviations: -1224451120851.1016
[2025-11-23 08:36:42] 2025-11-23 13:35:48,380 | INFO     | mean x: 1763820809.5317373
[2025-11-23 08:36:42] 2025-11-23 13:35:48,380 | INFO     | mean y: 2973071.235400798
[2025-11-23 08:36:42] 2025-11-23 13:35:48,380 | INFO     | intersect: 335320489.08990496
[2025-11-23 08:36:42] 2025-11-23 13:35:48,384 | INFO     | chi2: 45.39608615022242
[2025-11-23 08:36:42] 2025-11-23 13:35:48,388 | INFO     | sum of square deviations: 6463073461888.412
[2025-11-23 08:36:42] 2025-11-23 13:35:48,563 | INFO     | sum of deviations: -240758121670.78952
[2025-11-23 08:36:42] 2025-11-23 13:35:48,563 | INFO     | mean x: 1763820657.0450583
[2025-11-23 08:36:42] 2025-11-23 13:35:48,563 | INFO     | mean y: 2977322.183502907
[2025-11-23 08:36:42] 2025-11-23 13:35:48,563 | INFO     | intersect: 68681998.27273747
[2025-11-23 08:36:42] 2025-11-23 13:35:48,567 | INFO     | chi2: 41.86122424781282
[2025-11-23 08:36:42] 2025-11-23 13:35:48,567 | INFO     | current chi2=41.86122424781282 (change=7.786710710505345 %)
[2025-11-23 08:36:42] 2025-11-23 13:35:48,567 | INFO     | right removable region: 2751
[2025-11-23 08:36:42] 2025-11-23 13:35:48,571 | INFO     | sum of square deviations: 6463060963157.33
[2025-11-23 08:36:42] 2025-11-23 13:35:48,841 | INFO     | sum of deviations: -1879156211162.5596
[2025-11-23 08:36:42] 2025-11-23 13:35:48,841 | INFO     | mean x: 1763820962.0454216
[2025-11-23 08:36:42] 2025-11-23 13:35:48,841 | INFO     | mean y: 2975898.452398256
[2025-11-23 08:36:42] 2025-11-23 13:35:48,841 | INFO     | intersect: 515812638.675127
[2025-11-23 08:36:42] 2025-11-23 13:35:48,845 | INFO     | chi2: 43.64123011509302
[2025-11-23 08:36:42] 2025-11-23 13:35:48,845 | INFO     | current chi2=43.64123011509302 (change=3.86565491421952 %)
[2025-11-23 08:36:42] 2025-11-23 13:35:48,846 | INFO     | left removable region: 10
[2025-11-23 08:36:42] 2025-11-23 13:35:48,849 | INFO     | sum of square deviations: 6385874148070.138
[2025-11-23 08:36:42] 2025-11-23 13:35:49,040 | INFO     | time since job start (168229s) is within the limit (172800.0s)
[2025-11-23 08:36:42] 2025-11-23 13:35:49,126 | INFO     | sum of deviations: -879266866927.469
[2025-11-23 08:36:42] 2025-11-23 13:35:49,126 | INFO     | mean x: 1763820931.574243
[2025-11-23 08:36:42] 2025-11-23 13:35:49,126 | INFO     | mean y: 2981733.4297701567
[2025-11-23 08:36:42] 2025-11-23 13:35:49,126 | INFO     | intersect: 245841092.75414073
[2025-11-23 08:36:42] 2025-11-23 13:35:49,134 | INFO     | chi2: 39.382211629021434
[2025-11-23 08:36:42] 2025-11-23 13:35:49,135 | INFO     | current memory leak: -0.14 B/s (using 2741 data points, chi2=39.38)
[2025-11-23 08:36:42] 2025-11-23 13:35:49,141 | INFO     | could have reported an average CPU frequency of 2600 MHz (94 samples)
[2025-11-23 08:36:42] 2025-11-23 13:35:49,141 | INFO     | ..............................
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | . Timing measurements:
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | . get job = 0 s
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | . initial setup = 2 s
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | . payload setup = 5 s
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | . stage-in = 0 s
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | . payload execution = 168166 s
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | . stage-out = 8 s
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | . log creation = 1 s
[2025-11-23 08:36:42] 2025-11-23 13:35:49,142 | INFO     | ..............................
[2025-11-23 08:36:42] 2025-11-23 13:35:49,378 | INFO     | 
[2025-11-23 08:36:42] 2025-11-23 13:35:49,378 | INFO     | job summary report
[2025-11-23 08:36:42] 2025-11-23 13:35:49,378 | INFO     | --------------------------------------------------
[2025-11-23 08:36:42] 2025-11-23 13:35:49,378 | INFO     | PanDA job id: 6893880777
[2025-11-23 08:36:42] 2025-11-23 13:35:49,378 | INFO     | task id: 47523449
[2025-11-23 08:36:42] 2025-11-23 13:35:49,378 | INFO     | errors: (none)
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | pilot state: finished 
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | transexitcode: 0
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | exeerrorcode: 0
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | exeerrordiag: 
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | exitcode: 0
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | exitmsg: OK
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | cpuconsumptiontime: 309879 s
[2025-11-23 08:36:42] 2025-11-23 13:35:49,379 | INFO     | nevents: 1000
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | neventsw: 0
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | pid: 4189948
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | pgrp: 4189948
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | corecount: 8
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | event service: False
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | sizes: {0: 2298756, 1: 2298756, 4: 2299046, 11: 2299074, 168175: 2401588, 168185: 2410766, 168214: 2410956}
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | --------------------------------------------------
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | 
[2025-11-23 08:36:42] 2025-11-23 13:35:49,380 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 08:36:42] 2025-11-23 13:35:49,465 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,465 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,466 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,467 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,467 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,467 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,467 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,467 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,467 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,467 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 08:36:42] 2025-11-23 13:35:49,467 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,472 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 08:36:42] 2025-11-23 13:35:49,472 | INFO     | job 6893880777 has completed (purged errors)
[2025-11-23 08:36:42] 2025-11-23 13:35:49,472 | INFO     | overall cleanup function is called
[2025-11-23 08:36:42] 2025-11-23 13:35:50,505 | INFO     | --- collectZombieJob: --- 10, [4189948]
[2025-11-23 08:36:42] 2025-11-23 13:35:50,505 | INFO     | zombie collector waiting for pid 4189948
[2025-11-23 08:36:42] 2025-11-23 13:35:50,505 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 08:36:42] 2025-11-23 13:35:50,505 | INFO     | collected zombie processes
[2025-11-23 08:36:42] 2025-11-23 13:35:50,505 | INFO     | will attempt to kill all subprocesses of pid=4189948
[2025-11-23 08:36:42] 2025-11-23 13:35:51,033 | INFO     | process IDs to be killed: [4189948] (in reverse order)
[2025-11-23 08:36:42] 2025-11-23 13:35:51,220 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 08:36:42] 2025-11-23 13:35:51,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 08:36:42] 2025-11-23 13:35:51,237 | INFO     | did not find any defunct processes belonging to 4189948
[2025-11-23 08:36:42] 2025-11-23 13:35:51,262 | INFO     | did not find any defunct processes belonging to 4189948
[2025-11-23 08:36:42] 2025-11-23 13:35:51,264 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 08:36:42] 2025-11-23 13:35:51,264 | INFO     | ready for new job
[2025-11-23 08:36:42] 2025-11-23 13:35:51,265 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 08:36:42] 2025-11-23 13:35:51,281 | INFO     | ***************************************
[2025-11-23 08:36:42] 2025-11-23 13:35:51,281 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 08:36:42] 2025-11-23 13:35:51,282 | INFO     | ***************************************
[2025-11-23 08:36:42] 2025-11-23 13:35:51,282 | INFO     | 
[2025-11-23 08:36:42] 2025-11-23 13:35:51,289 | INFO     | architecture information:
[2025-11-23 08:36:42] 2025-11-23 13:35:51,307 | INFO     | executing command: cat /etc/os-release
[2025-11-23 08:36:42] 2025-11-23 13:35:51,409 | INFO     | cat /etc/os-release:
[2025-11-23 08:36:42] NAME="CentOS Linux"
[2025-11-23 08:36:42] VERSION="7 (Core)"
[2025-11-23 08:36:42] ID="centos"
[2025-11-23 08:36:42] ID_LIKE="rhel fedora"
[2025-11-23 08:36:42] VERSION_ID="7"
[2025-11-23 08:36:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 08:36:42] ANSI_COLOR="0;31"
[2025-11-23 08:36:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 08:36:42] HOME_URL="https://www.centos.org/"
[2025-11-23 08:36:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 08:36:42] 
[2025-11-23 08:36:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 08:36:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 08:36:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 08:36:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 08:36:42] 
[2025-11-23 08:36:42] 2025-11-23 13:35:51,409 | INFO     | ***************************************
[2025-11-23 08:36:42] 2025-11-23 13:35:51,913 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 08:36:42] 2025-11-23 13:35:51,959 | INFO     | sufficient remaining disk space (50159681536 B)
[2025-11-23 08:36:42] 2025-11-23 13:35:51,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 08:36:42] 2025-11-23 13:35:51,960 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 08:36:42] 2025-11-23 13:35:51,960 | INFO     | update_server=False
[2025-11-23 08:36:42] 2025-11-23 13:35:51,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 08:36:42] 2025-11-23 13:35:51,960 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 08:36:42] 2025-11-23 13:35:51,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:36:42] 2025-11-23 13:35:51,965 | INFO     | aborting loop
[2025-11-23 08:36:42] 2025-11-23 13:35:52,016 | INFO     | all payload control threads have been joined
[2025-11-23 08:36:42] 2025-11-23 13:35:52,369 | INFO     | all data control threads have been joined
[2025-11-23 08:36:42] 2025-11-23 13:35:52,953 | INFO     | all job control threads have been joined
[2025-11-23 08:36:42] 2025-11-23 13:35:52,966 | INFO     | [job] retrieve thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:52,971 | INFO     | [job] job monitor thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,023 | INFO     | [payload] control thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,218 | INFO     | [payload] failed_post thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,298 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,330 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,345 | INFO     | [data] copytool_in thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,375 | INFO     | [data] control thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,417 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,667 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,698 | INFO     | [payload] validate_post thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,852 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 08:36:42] 2025-11-23 13:35:53,959 | INFO     | [job] control thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:53,985 | INFO     | [data] copytool_out thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:54,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:36:42] 2025-11-23 13:35:54,414 | INFO     | [job] validate thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:55,399 | INFO     | [job] queue monitor thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:35:57,873 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 08:36:42] 2025-11-23 13:36:22,843 | INFO     | PID=4183530 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 08:36:42] 2025-11-23 13:36:22,843 | INFO     | .. there are 8 such processes running
[2025-11-23 08:36:42] 2025-11-23 13:36:22,843 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 08:36:42] 2025-11-23 13:36:22,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 08:36:42] 2025-11-23 13:36:22,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 08:36:42] 2025-11-23 13:36:33,820 | INFO     | [monitor] cgroup control has ended
[2025-11-23 08:36:42] 2025-11-23 13:36:35,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398346188608)>', '<ExcThread(monitor, started 140397707781888)>']
[2025-11-23 08:36:42] 2025-11-23 13:36:35,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 08:36:42] 2025-11-23 13:36:35,976 | INFO     | [monitor] control thread has ended
[2025-11-23 08:36:42] 2025-11-23 13:36:40,758 | INFO     | all workflow threads have been joined
[2025-11-23 08:36:42] 2025-11-23 13:36:40,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 08:36:42] 2025-11-23 13:36:40,758 | INFO     | traces error code: 0
[2025-11-23 08:36:42] 2025-11-23 13:36:40,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 08:36:42] 2025-11-23 13:36:41,078 [wrapper] ==== pilot stdout END ====
[2025-11-23 08:36:42] 2025-11-23 13:36:41,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 08:36:42] 2025-11-23 13:36:41,113 [wrapper] pilotpid: 4183530
[2025-11-23 08:36:42] 2025-11-23 13:36:41,131 [wrapper] Pilot exit status: 0
[2025-11-23 08:36:42] 2025-11-23 13:36:41,211 [wrapper] pandaids: 6893880777
[2025-11-23 08:36:42] 2025-11-23 13:36:41,351 [wrapper] cleanup supervisor_pilot 3997295 4183531
[2025-11-23 08:36:42] 2025-11-23 13:36:41,363 [wrapper] Test setup, not cleaning
[2025-11-23 08:36:42] 2025-11-23 13:36:41,395 [wrapper] apfmon messages muted
[2025-11-23 08:36:42] 2025-11-23 13:36:41,437 [wrapper] ==== wrapper stdout END ====
[2025-11-23 08:36:42] 2025-11-23 13:36:41,474 [wrapper] ==== wrapper stderr END ====
[2025-11-23 08:36:42]  *** Error codes and diagnostics ***
[2025-11-23 08:36:42]     "exeErrorCode": 0,
[2025-11-23 08:36:42]     "exeErrorDiag": "",
[2025-11-23 08:36:42]     "pilotErrorCode": 0,
[2025-11-23 08:36:42]     "pilotErrorDiag": "",
[2025-11-23 08:36:42]  *** Listing of results directory ***
[2025-11-23 08:36:42] total 1347740
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 14:10 pilot3.tar.gz
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 14:39 queuedata.json
[2025-11-23 08:36:42] -rwx------. 1 boincer umatlas     36292 Nov 20 14:40 runpilot2-wrapper.sh
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas       100 Nov 21 09:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 08:36:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 09:51 run_atlas
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas       105 Nov 21 09:51 job.xml
[2025-11-23 08:36:42] -rw-r--r--. 2 boincer umatlas 410359344 Nov 21 09:51 EVNT.47493127._000842.pool.root.1
[2025-11-23 08:36:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 09:51 start_atlas.sh
[2025-11-23 08:36:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 09:51 shared
[2025-11-23 08:36:42] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 09:51 input.tar.gz
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas         0 Nov 21 09:51 boinc_lockfile
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 09:51 pandaJob.out
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas        57 Nov 21 09:51 setup.sh.local
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas    989798 Nov 21 09:51 agis_schedconf.cvmfs.json
[2025-11-23 08:36:42] drwx------. 5 boincer umatlas      4096 Nov 21 09:52 pilot3
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas       533 Nov 23 07:14 boinc_task_state.xml
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas      6661 Nov 23 08:31 init_data.xml
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas 918550386 Nov 23 08:33 HITS.47523449._008412.pool.root.1
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas      1072 Nov 23 08:35 memory_monitor_summary.json
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas   1526164 Nov 23 08:35 agis_ddmendpoints.agis.ALL.json
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas   3313008 Nov 23 08:35 log.47523449._008412.job.log.tgz.1
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas        95 Nov 23 08:35 pilot_heartbeat.json
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas      8665 Nov 23 08:35 heartbeat.json
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas        29 Nov 23 08:36 wrapper_checkpoint.txt
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas      4823 Nov 23 08:36 pilotlog.txt
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas  20308712 Nov 23 08:36 log.47523449._008412.job.log.1
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas       353 Nov 23 08:36 output.list
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 08:36 boinc_mmap_file
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas       620 Nov 23 08:36 runtime_log
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas  23644160 Nov 23 08:36 result.tar.gz
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas       667 Nov 23 08:36 sxQODmKhPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmz1GKDm1Q2nbm.diag
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas      9344 Nov 23 08:36 runtime_log.err
[2025-11-23 08:36:42] -rw-r--r--. 1 boincer umatlas     21836 Nov 23 08:36 stderr.txt
[2025-11-23 08:36:42] HITS file was successfully produced:
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas 918550386 Nov 23 08:33 shared/HITS.pool.root.1
[2025-11-23 08:36:42]  *** Contents of shared directory: ***
[2025-11-23 08:36:42] total 1321464
[2025-11-23 08:36:42] -rw-r--r--. 2 boincer umatlas 410359344 Nov 21 09:51 ATLAS.root_0
[2025-11-23 08:36:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 09:51 start_atlas.sh
[2025-11-23 08:36:42] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 09:51 input.tar.gz
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas 918550386 Nov 23 08:33 HITS.pool.root.1
[2025-11-23 08:36:42] -rw-------. 1 boincer umatlas  23644160 Nov 23 08:36 result.tar.gz
08:37:03 (4179864): run_atlas exited; CPU time 313110.154375
08:37:03 (4179864): called boinc_finish(0)

</stderr_txt>
]]>

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