Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:08:34 (4004534): wrapper (7.7.26015): starting
07:08:34 (4004534): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 07:08:34] Arguments: --nthreads 12
[2025-11-21 07:08:34] Threads: 12
[2025-11-21 07:08:34] Checking for CVMFS
[2025-11-21 07:08:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:08:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:08:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:08:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:08:34] 2.11.5.0 394429 21027 264752 153131 0 615 32332554 45568001 22109 130560 0 191347727 99.770 130270212 22332 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-21 07:08:34] CVMFS is ok
[2025-11-21 07:08:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:08:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:08:34] Further information can be found at the LHC@home message board.
[2025-11-21 07:08:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:08:34] Checking for apptainer binary...
[2025-11-21 07:08:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:08:34] Running /usr/bin/apptainer --version
[2025-11-21 07:08:34] apptainer version 1.4.1-1.el9
[2025-11-21 07:08:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:08:35] wns0074.triumf.lcg
[2025-11-21 07:08:35] apptainer works
[2025-11-21 07:08:35] Set ATHENA_PROC_NUMBER=12
[2025-11-21 07:08:35] Set ATHENA_CORE_NUMBER=12
[2025-11-21 07:08:35] Starting ATLAS job with PandaID=6894274123
[2025-11-21 07:08:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 07:21:00]  *** The last 200 lines of the pilot log: ***
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 07:21:00] 2025-11-21 15:20:24,992 | WARNING  | wrong length of table data, x=[1763737845.0, 1763737906.0, 1763737967.0, 1763738028.0, 1763738089.0, 1763738150.0, 1763738211.0], y=[784.0, 239307.0, 386274.0, 615
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | could have reported an average CPU frequency of 1369 MHz (4 samples)
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | ..............................
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . Timing measurements:
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . get job = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . initial setup = 3 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . payload setup = 33 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . stage-in = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . payload execution = 461 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . stage-out = 2 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . log creation = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | ..............................
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:21:00] 2025-11-21 15:20:24,997 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894274123/pilotlog.txt
[2025-11-21 07:21:00] 2025-11-21 15:20:25,085 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 07:21:00] - Log from pilotlog.txt -
[2025-11-21 07:21:00] 2025-11-21 15:20:24,982 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894274123/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 07:21:00] 2025-11-21 15:20:24,990 | INFO     | extracted standard info from prmon json
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 07:21:00] 2025-11-21 15:20:24,992 | WARNING  | wrong length of table data, x=[1763737845.0, 1763737906.0, 1763737967.0, 1763738028.0, 1763738089.0, 1763738150.0, 1763738211.0], y=[784.0, 239307.0, 386274.0, 615
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | could have reported an average CPU frequency of 1369 MHz (4 samples)
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | ..............................
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . Timing measurements:
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . get job = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . initial setup = 3 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . payload setup = 33 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . stage-in = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . payload execution = 461 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . stage-out = 2 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . log creation = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | ..............................
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:21:00] 2025-11-21 15:20:24,997 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894274123/pilotlog.txt
[2025-11-21 07:21:00] 2025-11-21 15:20:25,104 | WARNING  | 
[2025-11-21 07:21:00] [begin log extracts]
[2025-11-21 07:21:00] - Log from pilotlog.txt -
[2025-11-21 07:21:00] 2025-11-21 15:20:24,982 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894274123/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 07:21:00] 2025-11-21 15:20:24,990 | INFO     | extracted standard info from prmon json
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 07:21:00] 2025-11-21 15:20:24,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 07:21:00] 2025-11-21 15:20:24,992 | WARNING  | wrong length of table data, x=[1763737845.0, 1763737906.0, 1763737967.0, 1763738028.0, 1763738089.0, 1763738150.0, 1763738211.0], y=[784.0, 239307.0, 386274.0, 615
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | could have reported an average CPU frequency of 1369 MHz (4 samples)
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | ..............................
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . Timing measurements:
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . get job = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,993 | INFO     | . initial setup = 3 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . payload setup = 33 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . stage-in = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . payload execution = 461 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . stage-out = 2 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | . log creation = 0 s
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | ..............................
[2025-11-21 07:21:00] 2025-11-21 15:20:24,994 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 07:21:00] 2025-11-21 15:20:24,997 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894274123/pilotlog.txt
[2025-11-21 07:21:00] [end log extracts]
[2025-11-21 07:21:00] 2025-11-21 15:20:25,104 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 07:21:00] 2025-11-21 15:20:25,112 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 07:21:00] 2025-11-21 15:20:26,070 | INFO     | 
[2025-11-21 07:21:00] 2025-11-21 15:20:26,071 | INFO     | job summary report
[2025-11-21 07:21:00] 2025-11-21 15:20:26,071 | INFO     | --------------------------------------------------
[2025-11-21 07:21:00] 2025-11-21 15:20:26,071 | INFO     | PanDA job id: 6894274123
[2025-11-21 07:21:00] 2025-11-21 15:20:26,071 | INFO     | task id: 47533967
[2025-11-21 07:21:00] 2025-11-21 15:20:26,071 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 07:17:41,588 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 07:21:00] 2025-11-21 15:20:26,071 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 07:21:00] 2025-11-21 15:20:26,071 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | pilot state: failed 
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | transexitcode: 65
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | exeerrorcode: 65
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | exitcode: 65
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | cpuconsumptiontime: 84 s
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | nevents: 0
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | neventsw: 0
[2025-11-21 07:21:00] 2025-11-21 15:20:26,072 | INFO     | pid: 4015300
[2025-11-21 07:21:00] 2025-11-21 15:20:26,073 | INFO     | pgrp: 4015300
[2025-11-21 07:21:00] 2025-11-21 15:20:26,073 | INFO     | corecount: 12
[2025-11-21 07:21:00] 2025-11-21 15:20:26,073 | INFO     | event service: False
[2025-11-21 07:21:00] 2025-11-21 15:20:26,073 | INFO     | sizes: {0: 2298804, 7: 2299066, 11: 2299094, 497: 2324687, 498: 2324691, 500: 2329037, 504: 2329221, 653: 2329415}
[2025-11-21 07:21:00] 2025-11-21 15:20:26,107 | INFO     | --------------------------------------------------
[2025-11-21 07:21:00] 2025-11-21 15:20:26,108 | INFO     | 
[2025-11-21 07:21:00] 2025-11-21 15:20:26,108 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 07:21:00] 2025-11-21 15:20:26,310 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,311 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,311 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 07:21:00] 2025-11-21 15:20:26,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 07:21:00] 2025-11-21 15:20:26,313 | INFO     | job 6894274123 has completed (purged errors)
[2025-11-21 07:21:00] 2025-11-21 15:20:26,313 | INFO     | overall cleanup function is called
[2025-11-21 07:21:00] 2025-11-21 15:20:27,373 | INFO     | --- collectZombieJob: --- 10, [4015300]
[2025-11-21 07:21:00] 2025-11-21 15:20:27,374 | INFO     | zombie collector waiting for pid 4015300
[2025-11-21 07:21:00] 2025-11-21 15:20:27,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 07:21:00] 2025-11-21 15:20:27,374 | INFO     | collected zombie processes
[2025-11-21 07:21:00] 2025-11-21 15:20:27,374 | INFO     | will attempt to kill all subprocesses of pid=4015300
[2025-11-21 07:21:00] 2025-11-21 15:20:28,785 | INFO     | process IDs to be killed: [4015300] (in reverse order)
[2025-11-21 07:21:00] 2025-11-21 15:20:29,414 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 07:21:00] 2025-11-21 15:20:29,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 07:21:00] 2025-11-21 15:20:29,442 | INFO     | did not find any defunct processes belonging to 4015300
[2025-11-21 07:21:00] 2025-11-21 15:20:29,460 | INFO     | did not find any defunct processes belonging to 4015300
[2025-11-21 07:21:00] 2025-11-21 15:20:29,462 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 07:21:00] 2025-11-21 15:20:29,462 | INFO     | ready for new job
[2025-11-21 07:21:00] 2025-11-21 15:20:29,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 07:21:00] 2025-11-21 15:20:29,464 | INFO     | ***************************************
[2025-11-21 07:21:00] 2025-11-21 15:20:29,464 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 07:21:00] 2025-11-21 15:20:29,464 | INFO     | ***************************************
[2025-11-21 07:21:00] 2025-11-21 15:20:29,465 | INFO     | 
[2025-11-21 07:21:00] 2025-11-21 15:20:29,469 | INFO     | architecture information:
[2025-11-21 07:21:00] 2025-11-21 15:20:29,470 | INFO     | executing command: cat /etc/os-release
[2025-11-21 07:21:00] 2025-11-21 15:20:29,491 | INFO     | cat /etc/os-release:
[2025-11-21 07:21:00] NAME="CentOS Linux"
[2025-11-21 07:21:00] VERSION="7 (Core)"
[2025-11-21 07:21:00] ID="centos"
[2025-11-21 07:21:00] ID_LIKE="rhel fedora"
[2025-11-21 07:21:00] VERSION_ID="7"
[2025-11-21 07:21:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 07:21:00] ANSI_COLOR="0;31"
[2025-11-21 07:21:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 07:21:00] HOME_URL="https://www.centos.org/"
[2025-11-21 07:21:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 07:21:00] 
[2025-11-21 07:21:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 07:21:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 07:21:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 07:21:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 07:21:00] 
[2025-11-21 07:21:00] 2025-11-21 15:20:29,493 | INFO     | ***************************************
[2025-11-21 07:21:00] 2025-11-21 15:20:29,997 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 07:21:00] 2025-11-21 15:20:30,130 | INFO     | sufficient remaining disk space (1794646212608 B)
[2025-11-21 07:21:00] 2025-11-21 15:20:30,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 07:21:00] 2025-11-21 15:20:30,131 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 07:21:00] 2025-11-21 15:20:30,131 | INFO     | update_server=False
[2025-11-21 07:21:00] 2025-11-21 15:20:30,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 07:21:00] 2025-11-21 15:20:30,132 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 07:21:00] 2025-11-21 15:20:30,255 | INFO     | all payload control threads have been joined
[2025-11-21 07:21:00] 2025-11-21 15:20:30,393 | INFO     | all data control threads have been joined
[2025-11-21 07:21:00] 2025-11-21 15:20:30,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:21:00] 2025-11-21 15:20:30,730 | INFO     | aborting loop
[2025-11-21 07:21:00] 2025-11-21 15:20:30,871 | INFO     | all job control threads have been joined
[2025-11-21 07:21:00] 2025-11-21 15:20:31,099 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:21:00] 2025-11-21 15:20:31,137 | INFO     | [job] retrieve thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,244 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,262 | INFO     | [payload] control thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,400 | INFO     | [data] control thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,603 | INFO     | [data] copytool_in thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,736 | INFO     | [job] job monitor thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,791 | INFO     | [job] validate thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,791 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,803 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,815 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,878 | INFO     | [job] control thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:31,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 07:21:00] 2025-11-21 15:20:32,106 | INFO     | [job] queue monitor thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:32,139 | INFO     | [data] copytool_out thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:32,156 | INFO     | [payload] validate_post thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:32,572 | INFO     | [payload] failed_post thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:36,008 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 07:21:00] 2025-11-21 15:20:51,202 | INFO     | [monitor] cgroup control has ended
[2025-11-21 07:21:00] 2025-11-21 15:20:52,956 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139814458914624)>', '<ExcThread(monitor, started 139813759985408)>']
[2025-11-21 07:21:00] 2025-11-21 15:20:57,981 | INFO     | all workflow threads have been joined
[2025-11-21 07:21:00] 2025-11-21 15:20:57,982 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 07:21:00] 2025-11-21 15:20:57,982 | INFO     | traces error code: 0
[2025-11-21 07:21:00] 2025-11-21 15:20:57,983 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 07:21:00] 2025-11-21 15:20:59,607 | INFO     | PID=4008298 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 07:21:00] 2025-11-21 15:20:59,608 | INFO     | .. there are 34 such processes running
[2025-11-21 07:21:00] 2025-11-21 15:20:59,609 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 07:21:00] 2025-11-21 15:20:59,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 07:21:00] 2025-11-21 15:20:59,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 07:21:00] 2025-11-21 15:20:59,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 07:21:00] 2025-11-21 15:20:59,609 | INFO     | [monitor] control thread has ended
[2025-11-21 07:21:00] 2025-11-21 15:20:59,843 [wrapper] ==== pilot stdout END ====
[2025-11-21 07:21:00] 2025-11-21 15:20:59,861 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 07:21:00] 2025-11-21 15:20:59,870 [wrapper] pilotpid: 4008298
[2025-11-21 07:21:00] 2025-11-21 15:20:59,874 [wrapper] Pilot exit status: 0
[2025-11-21 07:21:00] 2025-11-21 15:20:59,897 [wrapper] pandaids: 6894274123
[2025-11-21 07:21:00] 2025-11-21 15:21:00,022 [wrapper] cleanup supervisor_pilot 4008304 4008299
[2025-11-21 07:21:00] 2025-11-21 15:21:00,029 [wrapper] Test setup, not cleaning
[2025-11-21 07:21:00] 2025-11-21 15:21:00,036 [wrapper] apfmon messages muted
[2025-11-21 07:21:00] 2025-11-21 15:21:00,057 [wrapper] ==== wrapper stdout END ====
[2025-11-21 07:21:00] 2025-11-21 15:21:00,073 [wrapper] ==== wrapper stderr END ====
[2025-11-21 07:21:00]  *** Error codes and diagnostics ***
[2025-11-21 07:21:00]     "exeErrorCode": 65,
[2025-11-21 07:21:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 07:21:00]     "pilotErrorCode": 1305,
[2025-11-21 07:21:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 07:21:00]  *** Listing of results directory ***
[2025-11-21 07:21:00] total 409252
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc    576529 Nov 20 23:07 pilot3.tar.gz
[2025-11-21 07:21:00] -rwx------. 1 boinc boinc     36292 Nov 20 23:23 runpilot2-wrapper.sh
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc      5112 Nov 20 23:23 queuedata.json
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc       100 Nov 21 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 07:21:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 07:08 run_atlas
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc       105 Nov 21 07:08 job.xml
[2025-11-21 07:21:00] -rw-r--r--. 2 boinc boinc 414750248 Nov 21 07:08 EVNT.47493127._002301.pool.root.1
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc      6594 Nov 21 07:08 init_data.xml
[2025-11-21 07:21:00] -rw-r--r--. 2 boinc boinc     15847 Nov 21 07:08 start_atlas.sh
[2025-11-21 07:21:00] drwxrwx--x. 2 boinc boinc      4096 Nov 21 07:08 shared
[2025-11-21 07:21:00] -rw-r--r--. 2 boinc boinc    590098 Nov 21 07:08 input.tar.gz
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc         0 Nov 21 07:08 boinc_lockfile
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc      2786 Nov 21 07:08 pandaJob.out
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc    989798 Nov 21 07:08 agis_schedconf.cvmfs.json
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc   1526164 Nov 21 07:08 agis_ddmendpoints.agis.ALL.json
[2025-11-21 07:21:00] drwx------. 5 boinc boinc      4096 Nov 21 07:08 pilot3
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc       525 Nov 21 07:17 boinc_task_state.xml
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc      1013 Nov 21 07:17 memory_monitor_summary.json
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc     54302 Nov 21 07:17 log.47533967._002726.job.log.tgz.1
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc        95 Nov 21 07:20 pilot_heartbeat.json
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc     10343 Nov 21 07:20 heartbeat.json
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc      8192 Nov 21 07:20 boinc_mmap_file
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc        23 Nov 21 07:20 wrapper_checkpoint.txt
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc       823 Nov 21 07:20 pilotlog.txt
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc    148151 Nov 21 07:21 log.47533967._002726.job.log.1
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc       186 Nov 21 07:21 output.list
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc       620 Nov 21 07:21 runtime_log
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc    225280 Nov 21 07:21 result.tar.gz
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc      8636 Nov 21 07:21 runtime_log.err
[2025-11-21 07:21:00] -rw-------. 1 boinc boinc       648 Nov 21 07:21 j1VNDmEfag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1BJKDmQxTCLm.diag
[2025-11-21 07:21:00] -rw-r--r--. 1 boinc boinc     22650 Nov 21 07:21 stderr.txt
[2025-11-21 07:21:01] No HITS result produced
[2025-11-21 07:21:01]  *** Contents of shared directory: ***
[2025-11-21 07:21:01] total 405852
[2025-11-21 07:21:01] -rw-r--r--. 2 boinc boinc 414750248 Nov 21 07:08 ATLAS.root_0
[2025-11-21 07:21:01] -rw-r--r--. 2 boinc boinc     15847 Nov 21 07:08 start_atlas.sh
[2025-11-21 07:21:01] -rw-r--r--. 2 boinc boinc    590098 Nov 21 07:08 input.tar.gz
[2025-11-21 07:21:01] -rw-------. 1 boinc boinc    225280 Nov 21 07:21 result.tar.gz
07:21:02 (4004534): run_atlas exited; CPU time 100.733523
07:21:02 (4004534): called boinc_finish(0)

</stderr_txt>
]]>

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