Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:13:14 (2801979): wrapper (7.7.26015): starting
18:13:14 (2801979): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 18:13:14] Arguments: --nthreads 3
[2025-11-21 18:13:14] Threads: 3
[2025-11-21 18:13:14] Checking for CVMFS
[2025-11-21 18:13:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 18:13:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 18:13:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 18:13:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 18:13:14] 2.9.2.0 16720 1700 82472 153128 3 252 34534766 36864000 0 130560 0 20954546 99.999 42794 1751 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 18:13:14] CVMFS is ok
[2025-11-21 18:13:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 18:13:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 18:13:14] Further information can be found at the LHC@home message board.
[2025-11-21 18:13:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 18:13:14] Checking for apptainer binary...
[2025-11-21 18:13:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 18:13:14] Running /usr/bin/apptainer --version
[2025-11-21 18:13:14] apptainer version 1.4.1-1.1
[2025-11-21 18:13:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 18:13:14] thA335
[2025-11-21 18:13:14] apptainer works
[2025-11-21 18:13:14] Set ATHENA_PROC_NUMBER=3
[2025-11-21 18:13:14] Set ATHENA_CORE_NUMBER=3
[2025-11-21 18:13:14] Starting ATLAS job with PandaID=6893878627
[2025-11-21 18:13:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:17:33]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:17:33] 2025-11-21 17:16:45,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:17:33] 2025-11-21 17:16:45,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:17:33] 2025-11-21 17:16:45,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:17:33] 2025-11-21 17:16:45,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:17:33] 2025-11-21 17:16:45,902 | INFO     | all job control threads have been joined
[2025-11-21 18:17:33] 2025-11-21 17:16:46,023 | INFO     | all data control threads have been joined
[2025-11-21 18:17:33] 2025-11-21 17:16:46,462 | INFO     | all payload control threads have been joined
[2025-11-21 18:17:33] 2025-11-21 17:16:46,638 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:46,639 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:46,640 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:46,746 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:46,888 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:46,908 | INFO     | [job] control thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,029 | INFO     | [data] control thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,320 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,396 | INFO     | [job] validate thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,468 | INFO     | [payload] control thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,474 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,538 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,735 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,804 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:47,890 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:16:48,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:17:33] 2025-11-21 17:16:52,070 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:17:33] 2025-11-21 17:17:26,135 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:17:33] 2025-11-21 17:17:27,946 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433682872128)>', '<ExcThread(monitor, started 140432671500032)>']
[2025-11-21 18:17:33] 2025-11-21 17:17:28,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:17:33] 2025-11-21 17:17:28,865 | INFO     | [monitor] control thread has ended
[2025-11-21 18:17:33] 2025-11-21 17:17:32,972 | INFO     | all workflow threads have been joined
[2025-11-21 18:17:33] 2025-11-21 17:17:32,973 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:17:33] 2025-11-21 17:17:32,973 | INFO     | traces error code: 0
[2025-11-21 18:17:33] 2025-11-21 17:17:32,974 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:17:33] 2025-11-21 17:17:33,019 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:17:33] 2025-11-21 17:17:33,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:17:33] 2025-11-21 17:17:33,025 [wrapper] pilotpid: 2805705
[2025-11-21 18:17:33] 2025-11-21 17:17:33,028 [wrapper] Pilot exit status: 0
[2025-11-21 18:17:33] 2025-11-21 17:17:33,036 [wrapper] pandaids: 6893878627
[2025-11-21 18:17:33] 2025-11-21 17:17:33,054 [wrapper] cleanup supervisor_pilot 2805711 2805706
[2025-11-21 18:17:33] 2025-11-21 17:17:33,057 [wrapper] Test setup, not cleaning
[2025-11-21 18:17:33] 2025-11-21 17:17:33,059 [wrapper] apfmon messages muted
[2025-11-21 18:17:33] 2025-11-21 17:17:33,062 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:17:33] 2025-11-21 17:17:33,064 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:17:33]  *** Error codes and diagnostics ***
[2025-11-21 18:17:33]     "exeErrorCode": 65,
[2025-11-21 18:17:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 18:17:33]     "pilotErrorCode": 1305,
[2025-11-21 18:17:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 18:17:33]  *** Listing of results directory ***
[2025-11-21 18:17:33] total 406484
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-21 18:17:33] -rwx------ 1 boinc boinc     36292 Nov 20 19:54 runpilot2-wrapper.sh
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc      5112 Nov 20 19:54 queuedata.json
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc       100 Nov 21 18:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:17:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 18:13 run_atlas
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc       105 Nov 21 18:13 job.xml
[2025-11-21 18:17:33] -rw-r--r-- 2 boinc boinc 412029579 Nov 21 18:13 EVNT.47493127._000808.pool.root.1
[2025-11-21 18:17:33] -rw-r--r-- 2 boinc boinc    590102 Nov 21 18:13 input.tar.gz
[2025-11-21 18:17:33] -rw-r--r-- 2 boinc boinc     15847 Nov 21 18:13 start_atlas.sh
[2025-11-21 18:17:33] drwxrwx--x 2 boinc boinc      4096 Nov 21 18:13 shared
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc         0 Nov 21 18:13 boinc_setup_complete
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc      6194 Nov 21 18:13 init_data.xml
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc         0 Nov 21 18:13 boinc_lockfile
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc      2784 Nov 21 18:13 pandaJob.out
[2025-11-21 18:17:33] -rw------- 1 boinc boinc    989817 Nov 21 18:13 agis_schedconf.cvmfs.json
[2025-11-21 18:17:33] -rw------- 1 boinc boinc   1526164 Nov 21 18:13 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:17:33] drwx------ 5 boinc boinc      4096 Nov 21 18:13 pilot3
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc       523 Nov 21 18:14 boinc_task_state.xml
[2025-11-21 18:17:33] -rw------- 1 boinc boinc       951 Nov 21 18:14 memory_monitor_summary.json
[2025-11-21 18:17:33] -rw------- 1 boinc boinc     56155 Nov 21 18:14 log.47523449._008080.job.log.tgz.1
[2025-11-21 18:17:33] -rw------- 1 boinc boinc        95 Nov 21 18:16 pilot_heartbeat.json
[2025-11-21 18:17:33] -rw------- 1 boinc boinc      8411 Nov 21 18:16 heartbeat.json
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc        23 Nov 21 18:17 wrapper_checkpoint.txt
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc      8192 Nov 21 18:17 boinc_mmap_file
[2025-11-21 18:17:33] -rw------- 1 boinc boinc      4556 Nov 21 18:17 pilotlog.txt
[2025-11-21 18:17:33] -rw------- 1 boinc boinc     94234 Nov 21 18:17 log.47523449._008080.job.log.1
[2025-11-21 18:17:33] -rw------- 1 boinc boinc       186 Nov 21 18:17 output.list
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc       620 Nov 21 18:17 runtime_log
[2025-11-21 18:17:33] -rw------- 1 boinc boinc    174080 Nov 21 18:17 result.tar.gz
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc      8744 Nov 21 18:17 runtime_log.err
[2025-11-21 18:17:33] -rw------- 1 boinc boinc       649 Nov 21 18:17 8WVLDm0yOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYyGKDmGtMFjn.diag
[2025-11-21 18:17:33] -rw-r--r-- 1 boinc boinc      7060 Nov 21 18:17 stderr.txt
[2025-11-21 18:17:33] No HITS result produced
[2025-11-21 18:17:33]  *** Contents of shared directory: ***
[2025-11-21 18:17:33] total 403148
[2025-11-21 18:17:33] -rw-r--r-- 2 boinc boinc 412029579 Nov 21 18:13 ATLAS.root_0
[2025-11-21 18:17:33] -rw-r--r-- 2 boinc boinc    590102 Nov 21 18:13 input.tar.gz
[2025-11-21 18:17:33] -rw-r--r-- 2 boinc boinc     15847 Nov 21 18:13 start_atlas.sh
[2025-11-21 18:17:33] -rw------- 1 boinc boinc    174080 Nov 21 18:17 result.tar.gz
18:17:34 (2801979): run_atlas exited; CPU time 32.508730
18:17:34 (2801979): called boinc_finish(0)

</stderr_txt>
]]>

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