Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:13:07 (1105855): wrapper (7.7.26015): starting
07:13:07 (1105855): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 07:13:08] Arguments: --nthreads 3
[2025-11-24 07:13:08] Threads: 3
[2025-11-24 07:13:08] Checking for CVMFS
[2025-11-24 07:13:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 07:13:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 07:13:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 07:13:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 07:13:08] 2.9.2.0 28796 8018 90584 153235 2 81 30247374 36864000 0 130560 0 2994475 99.920 452180 6681 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 07:13:08] CVMFS is ok
[2025-11-24 07:13:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 07:13:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 07:13:08] Further information can be found at the LHC@home message board.
[2025-11-24 07:13:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 07:13:08] Checking for apptainer binary...
[2025-11-24 07:13:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 07:13:08] Running /usr/bin/apptainer --version
[2025-11-24 07:13:08] apptainer version 1.4.1-1.1
[2025-11-24 07:13:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 07:13:08] thA331b
[2025-11-24 07:13:08] apptainer works
[2025-11-24 07:13:08] Set ATHENA_PROC_NUMBER=3
[2025-11-24 07:13:08] Set ATHENA_CORE_NUMBER=3
[2025-11-24 07:13:08] Starting ATLAS job with PandaID=6893877411
[2025-11-24 07:13:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 15:05:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 15:05:54] 2025-11-24 14:05:01,367 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 15:05:54] 2025-11-24 14:05:01,367 | INFO     | update_server=False
[2025-11-24 15:05:54] 2025-11-24 14:05:01,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 15:05:54] 2025-11-24 14:05:01,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:05:54] 2025-11-24 14:05:01,457 | INFO     | all data control threads have been joined
[2025-11-24 15:05:54] 2025-11-24 14:05:01,583 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 15:05:54] 2025-11-24 14:05:01,623 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 15:05:54] 2025-11-24 14:05:01,623 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 15:05:54] 2025-11-24 14:05:01,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:05:54] 2025-11-24 14:05:01,623 | INFO     | will abort loop
[2025-11-24 15:05:54] 2025-11-24 14:05:01,963 | INFO     | all payload control threads have been joined
[2025-11-24 15:05:54] 2025-11-24 14:05:02,024 | INFO     | all job control threads have been joined
[2025-11-24 15:05:54] 2025-11-24 14:05:02,373 | INFO     | [job] retrieve thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:02,373 | INFO     | [job] queue monitor thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:02,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 15:05:54] 2025-11-24 14:05:02,463 | INFO     | [data] control thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:02,629 | INFO     | [job] job monitor thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:02,773 | INFO     | [data] copytool_in thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:02,834 | INFO     | [payload] validate_post thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:02,969 | INFO     | [payload] control thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:03,030 | INFO     | [payload] failed_post thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:03,030 | INFO     | [job] control thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:03,323 | INFO     | [job] validate thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:03,326 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:03,342 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:03,589 | INFO     | [data] copytool_out thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:03,705 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:06,406 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:11,805 | INFO     | job.realtimelogging is not enabled
[2025-11-24 15:05:54] 2025-11-24 14:05:12,811 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 15:05:54] 2025-11-24 14:05:32,025 | INFO     | PID=1109579 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:05:54] 2025-11-24 14:05:32,025 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 15:05:54] 2025-11-24 14:05:32,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 15:05:54] 2025-11-24 14:05:32,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 15:05:54] 2025-11-24 14:05:47,285 | INFO     | [monitor] cgroup control has ended
[2025-11-24 15:05:54] 2025-11-24 14:05:48,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716395743040)>', '<ExcThread(monitor, started 139716041086720)>']
[2025-11-24 15:05:54] 2025-11-24 14:05:49,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 15:05:54] 2025-11-24 14:05:49,116 | INFO     | [monitor] control thread has ended
[2025-11-24 15:05:54] 2025-11-24 14:05:53,910 | INFO     | all workflow threads have been joined
[2025-11-24 15:05:54] 2025-11-24 14:05:53,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 15:05:54] 2025-11-24 14:05:53,911 | INFO     | traces error code: 0
[2025-11-24 15:05:54] 2025-11-24 14:05:53,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 15:05:54] 2025-11-24 14:05:53,959 [wrapper] ==== pilot stdout END ====
[2025-11-24 15:05:54] 2025-11-24 14:05:53,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 15:05:54] 2025-11-24 14:05:53,964 [wrapper] pilotpid: 1109579
[2025-11-24 15:05:54] 2025-11-24 14:05:53,966 [wrapper] Pilot exit status: 0
[2025-11-24 15:05:54] 2025-11-24 14:05:53,974 [wrapper] pandaids: 6893877411
[2025-11-24 15:05:54] 2025-11-24 14:05:53,990 [wrapper] cleanup supervisor_pilot 1166794 1109580
[2025-11-24 15:05:54] 2025-11-24 14:05:53,992 [wrapper] Test setup, not cleaning
[2025-11-24 15:05:54] 2025-11-24 14:05:53,995 [wrapper] apfmon messages muted
[2025-11-24 15:05:54] 2025-11-24 14:05:53,997 [wrapper] ==== wrapper stdout END ====
[2025-11-24 15:05:54] 2025-11-24 14:05:53,999 [wrapper] ==== wrapper stderr END ====
[2025-11-24 15:05:54]  *** Error codes and diagnostics ***
[2025-11-24 15:05:54]     "exeErrorCode": 0,
[2025-11-24 15:05:54]     "exeErrorDiag": "",
[2025-11-24 15:05:54]     "pilotErrorCode": 0,
[2025-11-24 15:05:54]     "pilotErrorDiag": "",
[2025-11-24 15:05:54]  *** Listing of results directory ***
[2025-11-24 15:05:54] total 1314712
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-24 15:05:54] -rwx------ 1 boinc boinc     36292 Nov 20 19:44 runpilot2-wrapper.sh
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc      5112 Nov 20 19:44 queuedata.json
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc       100 Nov 24 07:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 15:05:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 07:13 run_atlas
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc       105 Nov 24 07:13 job.xml
[2025-11-24 15:05:54] -rw-r--r-- 2 boinc boinc 411478778 Nov 24 07:13 EVNT.47493127._000802.pool.root.1
[2025-11-24 15:05:54] -rw-r--r-- 2 boinc boinc    590097 Nov 24 07:13 input.tar.gz
[2025-11-24 15:05:54] -rw-r--r-- 2 boinc boinc     15847 Nov 24 07:13 start_atlas.sh
[2025-11-24 15:05:54] drwxrwx--x 2 boinc boinc      4096 Nov 24 07:13 shared
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc         0 Nov 24 07:13 boinc_setup_complete
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc      6441 Nov 24 07:13 init_data.xml
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc         0 Nov 24 07:13 boinc_lockfile
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc      2782 Nov 24 07:13 pandaJob.out
[2025-11-24 15:05:54] -rw------- 1 boinc boinc    989786 Nov 24 07:13 agis_schedconf.cvmfs.json
[2025-11-24 15:05:54] drwx------ 5 boinc boinc      4096 Nov 24 07:13 pilot3
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc       531 Nov 24 15:02 boinc_task_state.xml
[2025-11-24 15:05:54] -rw------- 1 boinc boinc 920604797 Nov 24 15:04 HITS.47523449._008011.pool.root.1
[2025-11-24 15:05:54] -rw------- 1 boinc boinc      1026 Nov 24 15:04 memory_monitor_summary.json
[2025-11-24 15:05:54] -rw------- 1 boinc boinc   1516227 Nov 24 15:04 agis_ddmendpoints.agis.ALL.json
[2025-11-24 15:05:54] -rw------- 1 boinc boinc   1160599 Nov 24 15:04 log.47523449._008011.job.log.tgz.1
[2025-11-24 15:05:54] -rw------- 1 boinc boinc      8578 Nov 24 15:04 heartbeat.json
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc      8192 Nov 24 15:05 boinc_mmap_file
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc        28 Nov 24 15:05 wrapper_checkpoint.txt
[2025-11-24 15:05:54] -rw------- 1 boinc boinc        95 Nov 24 15:05 pilot_heartbeat.json
[2025-11-24 15:05:54] -rw------- 1 boinc boinc      5010 Nov 24 15:05 pilotlog.txt
[2025-11-24 15:05:54] -rw------- 1 boinc boinc   3984706 Nov 24 15:05 log.47523449._008011.job.log.1
[2025-11-24 15:05:54] -rw------- 1 boinc boinc       353 Nov 24 15:05 output.list
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc       620 Nov 24 15:05 runtime_log
[2025-11-24 15:05:54] -rw------- 1 boinc boinc   5160960 Nov 24 15:05 result.tar.gz
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc      8903 Nov 24 15:05 runtime_log.err
[2025-11-24 15:05:54] -rw------- 1 boinc boinc       666 Nov 24 15:05 E3iMDmIpOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZxGKDm4dvFKo.diag
[2025-11-24 15:05:54] -rw-r--r-- 1 boinc boinc      7841 Nov 24 15:05 stderr.txt
[2025-11-24 15:05:54] HITS file was successfully produced:
[2025-11-24 15:05:54] -rw------- 1 boinc boinc 920604797 Nov 24 15:04 shared/HITS.pool.root.1
[2025-11-24 15:05:54]  *** Contents of shared directory: ***
[2025-11-24 15:05:54] total 1306508
[2025-11-24 15:05:54] -rw-r--r-- 2 boinc boinc 411478778 Nov 24 07:13 ATLAS.root_0
[2025-11-24 15:05:54] -rw-r--r-- 2 boinc boinc    590097 Nov 24 07:13 input.tar.gz
[2025-11-24 15:05:54] -rw-r--r-- 2 boinc boinc     15847 Nov 24 07:13 start_atlas.sh
[2025-11-24 15:05:54] -rw------- 1 boinc boinc 920604797 Nov 24 15:04 HITS.pool.root.1
[2025-11-24 15:05:54] -rw------- 1 boinc boinc   5160960 Nov 24 15:05 result.tar.gz
15:05:55 (1105855): run_atlas exited; CPU time 83658.397495
15:05:55 (1105855): called boinc_finish(0)

</stderr_txt>
]]>

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