Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:58:07 (1557948): wrapper (7.7.26015): starting
09:58:07 (1557948): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 09:58:07] Arguments: --nthreads 8
[2025-11-21 09:58:07] Threads: 8
[2025-11-21 09:58:07] Checking for CVMFS
[2025-11-21 09:58:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 09:58:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 09:58:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 09:58:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 09:58:09] 2.13.3.0 13693 22997 320980 153131 0 246 40339459 40960000 11414 16776704 0 58335726 99.595 61735202 36586 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 09:58:09] CVMFS is ok
[2025-11-21 09:58:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 09:58:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 09:58:09] Further information can be found at the LHC@home message board.
[2025-11-21 09:58:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 09:58:09] Checking for apptainer binary...
[2025-11-21 09:58:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 09:58:09] Running /usr/bin/apptainer --version
[2025-11-21 09:58:09] apptainer version 1.4.4-1.el9
[2025-11-21 09:58:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 09:58:10] c6-5-37-3.aglt2.org
[2025-11-21 09:58:10] apptainer works
[2025-11-21 09:58:10] Set ATHENA_PROC_NUMBER=8
[2025-11-21 09:58:10] Set ATHENA_CORE_NUMBER=8
[2025-11-21 09:58:10] Starting ATLAS job with PandaID=6893846356
[2025-11-21 09:58:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 17:28:50]  *** The last 200 lines of the pilot log: ***
[2025-11-22 17:28:50] 2025-11-22 22:27:35,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 17:28:50] 2025-11-22 22:27:35,467 | INFO     | time since job start (113308s) is within the limit (172800.0s)
[2025-11-22 17:28:50] 2025-11-22 22:27:37,491 | INFO     | time since job start (113310s) is within the limit (172800.0s)
[2025-11-22 17:28:50] 2025-11-22 22:27:37,929 | INFO     | monitor loop #6251: job 0:6893846356 is in state 'finished'
[2025-11-22 17:28:50] 2025-11-22 22:27:37,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 17:28:50] 2025-11-22 22:27:39,508 | INFO     | time since job start (113312s) is within the limit (172800.0s)
[2025-11-22 17:28:50] 2025-11-22 22:27:40,435 | INFO     | monitor loop #6252: job 0:6893846356 is in state 'finished'
[2025-11-22 17:28:50] 2025-11-22 22:27:40,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 17:28:50] 2025-11-22 22:27:41,518 | INFO     | time since job start (113314s) is within the limit (172800.0s)
[2025-11-22 17:28:50] 2025-11-22 22:27:42,945 | INFO     | monitor loop #6253: job 0:6893846356 is in state 'finished'
[2025-11-22 17:28:50] 2025-11-22 22:27:42,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 17:28:50] 2025-11-22 22:27:43,087 | INFO     | PID=1562617 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 17:28:50] 2025-11-22 22:27:43,088 | INFO     | .. there are 30 such processes running
[2025-11-22 17:28:50] 2025-11-22 22:27:44,094 | INFO     | time since job start (113317s) is within the limit (172800.0s)
[2025-11-22 17:28:50] 2025-11-22 22:27:45,449 | INFO     | monitor loop #6254: job 0:6893846356 is in state 'finished'
[2025-11-22 17:28:50] 2025-11-22 22:27:45,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 17:28:50] 2025-11-22 22:27:46,043 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 17:28:50] 2025-11-22 22:27:46,078 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2929.663392857143
[2025-11-22 17:28:50] 2025-11-22 22:27:46,103 | INFO     | time since job start (113319s) is within the limit (172800.0s)
[2025-11-22 17:28:50] 2025-11-22 22:27:46,121 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893846356/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 17:28:50] 2025-11-22 22:27:46,123 | INFO     | extracted standard info from prmon json
[2025-11-22 17:28:50] 2025-11-22 22:27:46,124 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 17:28:50] 2025-11-22 22:27:46,124 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 17:28:50] 2025-11-22 22:27:46,154 | INFO     | fitting pss+swap vs Time
[2025-11-22 17:28:50] 2025-11-22 22:27:46,157 | INFO     | sum of square deviations: 1979191378078.198
[2025-11-22 17:28:50] 2025-11-22 22:27:46,330 | INFO     | sum of deviations: 2747507768994.257
[2025-11-22 17:28:50] 2025-11-22 22:27:46,331 | INFO     | mean x: 1763793823.554717
[2025-11-22 17:28:50] 2025-11-22 22:27:46,331 | INFO     | mean y: 2896830.2388140163
[2025-11-22 17:28:50] 2025-11-22 22:27:46,331 | INFO     | intersect: -2445596674.1266866
[2025-11-22 17:28:50] 2025-11-22 22:27:46,337 | INFO     | chi2: 34.11886716414702
[2025-11-22 17:28:50] 2025-11-22 22:27:46,340 | INFO     | sum of square deviations: 1963232443101.1448
[2025-11-22 17:28:50] 2025-11-22 22:27:46,445 | INFO     | sum of deviations: 3388463130523.6504
[2025-11-22 17:28:50] 2025-11-22 22:27:46,445 | INFO     | mean x: 1763793671.069189
[2025-11-22 17:28:50] 2025-11-22 22:27:46,449 | INFO     | mean y: 2902953.9324324327
[2025-11-22 17:28:50] 2025-11-22 22:27:46,449 | INFO     | intersect: -3041336583.40339
[2025-11-22 17:28:50] 2025-11-22 22:27:46,451 | INFO     | chi2: 30.631130695705284
[2025-11-22 17:28:50] 2025-11-22 22:27:46,451 | INFO     | current chi2=30.631130695705284 (change=10.222310288504357 %)
[2025-11-22 17:28:50] 2025-11-22 22:27:46,451 | INFO     | right removable region: 1849
[2025-11-22 17:28:50] 2025-11-22 22:27:46,462 | INFO     | sum of square deviations: 1963226270806.006
[2025-11-22 17:28:50] 2025-11-22 22:27:46,536 | INFO     | sum of deviations: 1998143102301.9597
[2025-11-22 17:28:50] 2025-11-22 22:27:46,536 | INFO     | mean x: 1763793976.0697298
[2025-11-22 17:28:50] 2025-11-22 22:27:46,537 | INFO     | mean y: 2903988.077837838
[2025-11-22 17:28:50] 2025-11-22 22:27:46,537 | INFO     | intersect: -1792259829.5490348
[2025-11-22 17:28:50] 2025-11-22 22:27:46,542 | INFO     | chi2: 30.059617349794816
[2025-11-22 17:28:50] 2025-11-22 22:27:46,543 | INFO     | current chi2=30.059617349794816 (change=11.897375709524631 %)
[2025-11-22 17:28:50] 2025-11-22 22:27:46,543 | INFO     | left removable region: 10
[2025-11-22 17:28:50] 2025-11-22 22:27:46,544 | INFO     | sum of square deviations: 1928413026688.4265
[2025-11-22 17:28:50] 2025-11-22 22:27:46,674 | INFO     | sum of deviations: 2156831373346.8472
[2025-11-22 17:28:50] 2025-11-22 22:27:46,675 | INFO     | mean x: 1763793945.6025014
[2025-11-22 17:28:50] 2025-11-22 22:27:46,675 | INFO     | mean y: 2917180.9902120717
[2025-11-22 17:28:50] 2025-11-22 22:27:46,688 | INFO     | intersect: -1969796166.9005575
[2025-11-22 17:28:50] 2025-11-22 22:27:46,690 | INFO     | chi2: 23.278196146383163
[2025-11-22 17:28:50] 2025-11-22 22:27:46,690 | INFO     | current memory leak: 1.12 B/s (using 1839 data points, chi2=23.28)
[2025-11-22 17:28:50] 2025-11-22 22:27:46,696 | INFO     | could have reported an average CPU frequency of 3056 MHz (65 samples)
[2025-11-22 17:28:50] 2025-11-22 22:27:46,696 | INFO     | ..............................
[2025-11-22 17:28:50] 2025-11-22 22:27:46,696 | INFO     | . Timing measurements:
[2025-11-22 17:28:50] 2025-11-22 22:27:46,697 | INFO     | . get job = 0 s
[2025-11-22 17:28:50] 2025-11-22 22:27:46,697 | INFO     | . initial setup = 5 s
[2025-11-22 17:28:50] 2025-11-22 22:27:46,697 | INFO     | . payload setup = 38 s
[2025-11-22 17:28:50] 2025-11-22 22:27:46,697 | INFO     | . stage-in = 0 s
[2025-11-22 17:28:50] 2025-11-22 22:27:46,697 | INFO     | . payload execution = 113165 s
[2025-11-22 17:28:50] 2025-11-22 22:27:46,697 | INFO     | . stage-out = 11 s
[2025-11-22 17:28:50] 2025-11-22 22:27:46,697 | INFO     | . log creation = 2 s
[2025-11-22 17:28:50] 2025-11-22 22:27:46,697 | INFO     | ..............................
[2025-11-22 17:28:50] 2025-11-22 22:27:47,702 | INFO     | 
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | job summary report
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | --------------------------------------------------
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | PanDA job id: 6893846356
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | task id: 47523449
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | errors: (none)
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | pilot state: finished 
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | transexitcode: 0
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | exeerrorcode: 0
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | exeerrordiag: 
[2025-11-22 17:28:50] 2025-11-22 22:27:47,703 | INFO     | exitcode: 0
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | exitmsg: OK
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | cpuconsumptiontime: 234738 s
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | nevents: 1000
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | neventsw: 0
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | pid: 1572784
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | pgrp: 1572784
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | corecount: 8
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | event service: False
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298863, 13: 2298863, 24: 2298919, 28: 2299209, 34: 2299365, 113206: 2375015, 113220: 2384093, 113260: 2384379}
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | --------------------------------------------------
[2025-11-22 17:28:50] 2025-11-22 22:27:47,704 | INFO     | 
[2025-11-22 17:28:50] 2025-11-22 22:27:47,705 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-22 17:28:50] 2025-11-22 22:27:47,928 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,928 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,928 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,928 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,928 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,928 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,929 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 17:28:50] 2025-11-22 22:27:47,930 | INFO     | job 6893846356 has completed (purged errors)
[2025-11-22 17:28:50] 2025-11-22 22:27:47,930 | INFO     | overall cleanup function is called
[2025-11-22 17:28:50] 2025-11-22 22:27:48,962 | INFO     | --- collectZombieJob: --- 10, [1572784]
[2025-11-22 17:28:50] 2025-11-22 22:27:48,962 | INFO     | zombie collector waiting for pid 1572784
[2025-11-22 17:28:50] 2025-11-22 22:27:48,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 17:28:50] 2025-11-22 22:27:48,963 | INFO     | collected zombie processes
[2025-11-22 17:28:50] 2025-11-22 22:27:48,963 | INFO     | will attempt to kill all subprocesses of pid=1572784
[2025-11-22 17:28:50] 2025-11-22 22:27:50,711 | INFO     | process IDs to be killed: [1572784] (in reverse order)
[2025-11-22 17:28:50] 2025-11-22 22:27:50,988 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 17:28:50] 2025-11-22 22:27:50,989 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 17:28:50] 2025-11-22 22:27:51,015 | INFO     | did not find any defunct processes belonging to 1572784
[2025-11-22 17:28:50] 2025-11-22 22:27:51,029 | INFO     | did not find any defunct processes belonging to 1572784
[2025-11-22 17:28:50] 2025-11-22 22:27:51,030 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 17:28:50] 2025-11-22 22:27:51,030 | INFO     | ready for new job
[2025-11-22 17:28:50] 2025-11-22 22:27:51,031 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 17:28:50] 2025-11-22 22:27:51,038 | INFO     | ***************************************
[2025-11-22 17:28:50] 2025-11-22 22:27:51,038 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 17:28:50] 2025-11-22 22:27:51,038 | INFO     | ***************************************
[2025-11-22 17:28:50] 2025-11-22 22:27:51,038 | INFO     | 
[2025-11-22 17:28:50] 2025-11-22 22:27:51,041 | INFO     | architecture information:
[2025-11-22 17:28:50] 2025-11-22 22:27:51,045 | INFO     | executing command: cat /etc/os-release
[2025-11-22 17:28:50] 2025-11-22 22:27:51,109 | INFO     | cat /etc/os-release:
[2025-11-22 17:28:50] NAME="CentOS Linux"
[2025-11-22 17:28:50] VERSION="7 (Core)"
[2025-11-22 17:28:50] ID="centos"
[2025-11-22 17:28:50] ID_LIKE="rhel fedora"
[2025-11-22 17:28:50] VERSION_ID="7"
[2025-11-22 17:28:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 17:28:50] ANSI_COLOR="0;31"
[2025-11-22 17:28:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 17:28:50] HOME_URL="https://www.centos.org/"
[2025-11-22 17:28:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 17:28:50] 
[2025-11-22 17:28:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 17:28:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 17:28:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 17:28:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 17:28:50] 
[2025-11-22 17:28:50] 2025-11-22 22:27:51,109 | INFO     | ***************************************
[2025-11-22 17:28:50] 2025-11-22 22:27:51,612 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-22 17:28:50] 2025-11-22 22:27:51,707 | INFO     | sufficient remaining disk space (70858571776 B)
[2025-11-22 17:28:50] 2025-11-22 22:27:51,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 17:28:50] 2025-11-22 22:27:51,712 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 17:28:50] 2025-11-22 22:27:51,712 | INFO     | update_server=False
[2025-11-22 17:28:50] 2025-11-22 22:27:51,712 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 17:28:50] 2025-11-22 22:27:51,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 17:28:50] 2025-11-22 22:27:51,712 | INFO     | aborting loop
[2025-11-22 17:28:50] 2025-11-22 22:27:51,828 | INFO     | all data control threads have been joined
[2025-11-22 17:28:50] 2025-11-22 22:27:52,342 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 17:28:50] 2025-11-22 22:27:52,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 17:28:50] 2025-11-22 22:27:52,645 | INFO     | all job control threads have been joined
[2025-11-22 17:28:50] 2025-11-22 22:27:52,711 | INFO     | all payload control threads have been joined
[2025-11-22 17:28:50] 2025-11-22 22:27:52,717 | INFO     | [job] retrieve thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:52,725 | INFO     | [job] job monitor thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:52,735 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:52,834 | INFO     | [data] control thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,009 | INFO     | [payload] validate_post thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,354 | INFO     | [job] queue monitor thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,607 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,608 | INFO     | [job] validate thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,608 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,660 | INFO     | [job] control thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,721 | INFO     | [payload] control thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:53,910 | INFO     | [payload] failed_post thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:54,195 | INFO     | [data] copytool_in thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:54,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 17:28:50] 2025-11-22 22:27:54,614 | INFO     | [data] copytool_out thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:27:58,278 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 17:28:50] 2025-11-22 22:28:19,819 | INFO     | PID=1562617 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 17:28:50] 2025-11-22 22:28:19,819 | INFO     | .. there are 30 such processes running
[2025-11-22 17:28:50] 2025-11-22 22:28:19,820 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 17:28:50] 2025-11-22 22:28:19,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 17:28:50] 2025-11-22 22:28:19,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 17:28:50] 2025-11-22 22:28:42,190 | INFO     | [monitor] cgroup control has ended
[2025-11-22 17:28:50] 2025-11-22 22:28:42,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502424041280)>', '<ExcThread(monitor, started 140501785237248)>']
[2025-11-22 17:28:50] 2025-11-22 22:28:43,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 17:28:50] 2025-11-22 22:28:43,076 | INFO     | [monitor] control thread has ended
[2025-11-22 17:28:50] 2025-11-22 22:28:47,689 | INFO     | all workflow threads have been joined
[2025-11-22 17:28:50] 2025-11-22 22:28:47,689 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 17:28:50] 2025-11-22 22:28:47,690 | INFO     | traces error code: 0
[2025-11-22 17:28:50] 2025-11-22 22:28:47,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 17:28:50] 2025-11-22 22:28:49,093 [wrapper] ==== pilot stdout END ====
[2025-11-22 17:28:50] 2025-11-22 22:28:49,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 17:28:50] 2025-11-22 22:28:49,184 [wrapper] pilotpid: 1562617
[2025-11-22 17:28:50] 2025-11-22 22:28:49,243 [wrapper] Pilot exit status: 0
[2025-11-22 17:28:50] 2025-11-22 22:28:49,380 [wrapper] pandaids: 6893846356
[2025-11-22 17:28:50] 2025-11-22 22:28:49,865 [wrapper] cleanup supervisor_pilot  134650 1562618
[2025-11-22 17:28:50] 2025-11-22 22:28:49,896 [wrapper] Test setup, not cleaning
[2025-11-22 17:28:50] 2025-11-22 22:28:49,924 [wrapper] apfmon messages muted
[2025-11-22 17:28:50] 2025-11-22 22:28:49,974 [wrapper] ==== wrapper stdout END ====
[2025-11-22 17:28:50] 2025-11-22 22:28:50,020 [wrapper] ==== wrapper stderr END ====
[2025-11-22 17:28:50]  *** Error codes and diagnostics ***
[2025-11-22 17:28:50]     "exeErrorCode": 0,
[2025-11-22 17:28:50]     "exeErrorDiag": "",
[2025-11-22 17:28:50]     "pilotErrorCode": 0,
[2025-11-22 17:28:50]     "pilotErrorDiag": "",
[2025-11-22 17:28:50]  *** Listing of results directory ***
[2025-11-22 17:28:50] total 1327360
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-22 17:28:50] -rwx------. 1 boincer umatlas     36292 Nov 20 05:23 runpilot2-wrapper.sh
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:25 queuedata.json
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas       100 Nov 21 09:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 17:28:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 09:58 run_atlas
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas       105 Nov 21 09:58 job.xml
[2025-11-22 17:28:50] -rw-r--r--. 2 boincer umatlas 409092564 Nov 21 09:58 EVNT.47493127._000224.pool.root.1
[2025-11-22 17:28:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 09:58 start_atlas.sh
[2025-11-22 17:28:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 09:58 shared
[2025-11-22 17:28:50] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 09:58 input.tar.gz
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas         0 Nov 21 09:58 boinc_lockfile
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 09:58 pandaJob.out
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas        57 Nov 21 09:58 setup.sh.local
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas    989798 Nov 21 09:59 agis_schedconf.cvmfs.json
[2025-11-22 17:28:50] drwx------. 5 boincer umatlas      4096 Nov 21 09:59 pilot3
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas       533 Nov 22 16:17 boinc_task_state.xml
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas      6846 Nov 22 17:21 init_data.xml
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas 913574152 Nov 22 17:25 HITS.47523449._002238.pool.root.1
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas      1057 Nov 22 17:26 memory_monitor_summary.json
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas   1526164 Nov 22 17:27 agis_ddmendpoints.agis.ALL.json
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas   2715296 Nov 22 17:27 log.47523449._002238.job.log.tgz.1
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas        95 Nov 22 17:27 pilot_heartbeat.json
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas      8622 Nov 22 17:27 heartbeat.json
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas      4824 Nov 22 17:28 pilotlog.txt
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas  13593861 Nov 22 17:28 log.47523449._002238.job.log.1
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas       353 Nov 22 17:28 output.list
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas       620 Nov 22 17:28 runtime_log
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas  16332800 Nov 22 17:28 result.tar.gz
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas      9349 Nov 22 17:28 runtime_log.err
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas       664 Nov 22 17:28 B6ILDmqzGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrQHKDm4liB1m.diag
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 17:28 boinc_mmap_file
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas        29 Nov 22 17:28 wrapper_checkpoint.txt
[2025-11-22 17:28:50] -rw-r--r--. 1 boincer umatlas     21895 Nov 22 17:28 stderr.txt
[2025-11-22 17:28:50] HITS file was successfully produced:
[2025-11-22 17:28:50] -rw-------. 1 boincer umatlas 913574152 Nov 22 17:25 shared/HITS.pool.root.1
[2025-11-22 17:28:50]  *** Contents of shared directory: ***
[2025-11-22 17:28:51] total 1308228
[2025-11-22 17:28:51] -rw-r--r--. 2 boincer umatlas 409092564 Nov 21 09:58 ATLAS.root_0
[2025-11-22 17:28:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 09:58 start_atlas.sh
[2025-11-22 17:28:51] -rw-r--r--. 2 boincer umatlas    590101 Nov 21 09:58 input.tar.gz
[2025-11-22 17:28:51] -rw-------. 1 boincer umatlas 913574152 Nov 22 17:25 HITS.pool.root.1
[2025-11-22 17:28:51] -rw-------. 1 boincer umatlas  16332800 Nov 22 17:28 result.tar.gz
17:28:52 (1557948): run_atlas exited; CPU time 237655.784800
17:28:52 (1557948): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN