Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:46:13 (511246): wrapper (7.7.26015): starting
08:46:13 (511246): wrapper: running run_atlas (--nthreads 10)
[2025-11-21 08:46:13] Arguments: --nthreads 10
[2025-11-21 08:46:13] Threads: 10
[2025-11-21 08:46:13] Checking for CVMFS
[2025-11-21 08:46:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 08:46:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 08:46:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 08:46:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 08:46:13] 2.13.3.0 10223 22906 186964 153129 3 518 34318868 40960000 16720 16776704 0 296174752 99.784 159367863 51120 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 08:46:13] CVMFS is ok
[2025-11-21 08:46:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 08:46:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 08:46:13] Further information can be found at the LHC@home message board.
[2025-11-21 08:46:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 08:46:13] Checking for apptainer binary...
[2025-11-21 08:46:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 08:46:13] Running /usr/bin/apptainer --version
[2025-11-21 08:46:13] apptainer version 1.4.4-1.el9
[2025-11-21 08:46:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 08:46:13] c8-7-6.aglt2.org
[2025-11-21 08:46:13] apptainer works
[2025-11-21 08:46:13] Set ATHENA_PROC_NUMBER=10
[2025-11-21 08:46:13] Set ATHENA_CORE_NUMBER=10
[2025-11-21 08:46:13] Starting ATLAS job with PandaID=6893838313
[2025-11-21 08:46:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 15:48:20]  *** The last 200 lines of the pilot log: ***
[2025-11-21 15:48:20] 2025-11-21 20:47:19,914 | INFO     | monitor loop #1392: job 0:6893838313 is in state 'finished'
[2025-11-21 15:48:20] 2025-11-21 20:47:19,914 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:48:20] 2025-11-21 20:47:21,287 | INFO     | time since job start (25257s) is within the limit (172800.0s)
[2025-11-21 15:48:20] 2025-11-21 20:47:22,424 | INFO     | monitor loop #1393: job 0:6893838313 is in state 'finished'
[2025-11-21 15:48:20] 2025-11-21 20:47:22,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:48:20] 2025-11-21 20:47:23,311 | INFO     | time since job start (25259s) is within the limit (172800.0s)
[2025-11-21 15:48:20] 2025-11-21 20:47:24,941 | INFO     | monitor loop #1394: job 0:6893838313 is in state 'finished'
[2025-11-21 15:48:20] 2025-11-21 20:47:24,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:48:20] 2025-11-21 20:47:25,318 | INFO     | time since job start (25261s) is within the limit (172800.0s)
[2025-11-21 15:48:20] 2025-11-21 20:47:27,326 | INFO     | time since job start (25263s) is within the limit (172800.0s)
[2025-11-21 15:48:20] 2025-11-21 20:47:27,449 | INFO     | monitor loop #1395: job 0:6893838313 is in state 'finished'
[2025-11-21 15:48:20] 2025-11-21 20:47:27,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:48:20] 2025-11-21 20:47:29,339 | INFO     | time since job start (25265s) is within the limit (172800.0s)
[2025-11-21 15:48:20] 2025-11-21 20:47:29,983 | INFO     | monitor loop #1396: job 0:6893838313 is in state 'finished'
[2025-11-21 15:48:20] 2025-11-21 20:47:29,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:48:20] 2025-11-21 20:47:30,707 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 15:48:20] 2025-11-21 20:47:30,778 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9888437500003
[2025-11-21 15:48:20] 2025-11-21 20:47:31,000 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893838313/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 15:48:20] 2025-11-21 20:47:31,001 | INFO     | extracted standard info from prmon json
[2025-11-21 15:48:20] 2025-11-21 20:47:31,011 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:48:20] 2025-11-21 20:47:31,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:48:20] 2025-11-21 20:47:31,023 | INFO     | fitting pss+swap vs Time
[2025-11-21 15:48:20] 2025-11-21 20:47:31,024 | INFO     | sum of square deviations: 21848155711.44789
[2025-11-21 15:48:20] 2025-11-21 20:47:31,026 | INFO     | sum of deviations: -707408193410.9371
[2025-11-21 15:48:20] 2025-11-21 20:47:31,026 | INFO     | mean x: 1763745376.825666
[2025-11-21 15:48:20] 2025-11-21 20:47:31,026 | INFO     | mean y: 3072994.861985472
[2025-11-21 15:48:20] 2025-11-21 20:47:31,026 | INFO     | intersect: 57110315690.10602
[2025-11-21 15:48:20] 2025-11-21 20:47:31,031 | INFO     | chi2: 26.615138237079954
[2025-11-21 15:48:20] 2025-11-21 20:47:31,031 | INFO     | sum of square deviations: 21064594224.578472
[2025-11-21 15:48:20] 2025-11-21 20:47:31,033 | INFO     | sum of deviations: -561424331152.9215
[2025-11-21 15:48:20] 2025-11-21 20:47:31,033 | INFO     | mean x: 1763745224.3480392
[2025-11-21 15:48:20] 2025-11-21 20:47:31,033 | INFO     | mean y: 3101388.598039216
[2025-11-21 15:48:20] 2025-11-21 20:47:31,034 | INFO     | intersect: 47011340538.45864
[2025-11-21 15:48:20] 2025-11-21 20:47:31,034 | INFO     | chi2: 22.8722725810204
[2025-11-21 15:48:20] 2025-11-21 20:47:31,034 | INFO     | current chi2=22.8722725810204 (change=14.06292021750625 %)
[2025-11-21 15:48:20] 2025-11-21 20:47:31,034 | INFO     | right removable region: 407
[2025-11-21 15:48:20] 2025-11-21 20:47:31,034 | INFO     | sum of square deviations: 21064134284.578472
[2025-11-21 15:48:20] 2025-11-21 20:47:31,040 | INFO     | sum of deviations: -785543018427.8625
[2025-11-21 15:48:20] 2025-11-21 20:47:31,041 | INFO     | mean x: 1763745529.3480392
[2025-11-21 15:48:20] 2025-11-21 20:47:31,041 | INFO     | mean y: 3088111.9215686275
[2025-11-21 15:48:20] 2025-11-21 20:47:31,041 | INFO     | intersect: 65778304322.780106
[2025-11-21 15:48:20] 2025-11-21 20:47:31,041 | INFO     | chi2: 25.281474805846006
[2025-11-21 15:48:20] 2025-11-21 20:47:31,041 | INFO     | current chi2=25.281474805846006 (change=5.010920549628785 %)
[2025-11-21 15:48:20] 2025-11-21 20:47:31,041 | INFO     | left removable region: 10
[2025-11-21 15:48:20] 2025-11-21 20:47:31,041 | INFO     | sum of square deviations: 19406360431.55656
[2025-11-21 15:48:20] 2025-11-21 20:47:31,048 | INFO     | sum of deviations: -624658834872.7003
[2025-11-21 15:48:20] 2025-11-21 20:47:31,048 | INFO     | mean x: 1763745498.8942065
[2025-11-21 15:48:20] 2025-11-21 20:47:31,048 | INFO     | mean y: 3125022.1738035264
[2025-11-21 15:48:20] 2025-11-21 20:47:31,048 | INFO     | intersect: 56775192728.37251
[2025-11-21 15:48:20] 2025-11-21 20:47:31,048 | INFO     | chi2: 20.848145259390968
[2025-11-21 15:48:20] 2025-11-21 20:47:31,048 | INFO     | current memory leak: -32.19 B/s (using 397 data points, chi2=20.85)
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | could have reported an average CPU frequency of 3792 MHz (17 samples)
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | ..............................
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | . Timing measurements:
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | . get job = 0 s
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | . initial setup = 2 s
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | . payload setup = 5 s
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | . stage-in = 0 s
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | . payload execution = 25167 s
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | . stage-out = 14 s
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | . log creation = 2 s
[2025-11-21 15:48:20] 2025-11-21 20:47:31,049 | INFO     | ..............................
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | 
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | job summary report
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | --------------------------------------------------
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | PanDA job id: 6893838313
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | task id: 47523449
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | errors: (none)
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | pilot state: finished 
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | transexitcode: 0
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | exeerrorcode: 0
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | exeerrordiag: 
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | exitcode: 0
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | exitmsg: OK
[2025-11-21 15:48:20] 2025-11-21 20:47:31,164 | INFO     | cpuconsumptiontime: 135719 s
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | nevents: 1000
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | neventsw: 0
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | pid: 522833
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | pgrp: 522833
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | corecount: 10
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | event service: False
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | sizes: {0: 2298636, 1: 2298835, 5: 2299097, 11: 2299153, 25176: 2333875, 25192: 2342869, 25194: 2343053, 25252: 2343363}
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | --------------------------------------------------
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | 
[2025-11-21 15:48:20] 2025-11-21 20:47:31,165 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-21 15:48:20] 2025-11-21 20:47:31,295 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,295 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,295 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,295 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,295 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,295 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,295 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,297 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,297 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,297 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,297 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,297 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,297 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,297 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,298 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,298 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 15:48:20] 2025-11-21 20:47:31,298 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,298 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 15:48:20] 2025-11-21 20:47:31,298 | INFO     | job 6893838313 has completed (purged errors)
[2025-11-21 15:48:20] 2025-11-21 20:47:31,298 | INFO     | overall cleanup function is called
[2025-11-21 15:48:20] 2025-11-21 20:47:32,326 | INFO     | --- collectZombieJob: --- 10, [522833]
[2025-11-21 15:48:20] 2025-11-21 20:47:32,327 | INFO     | zombie collector waiting for pid 522833
[2025-11-21 15:48:20] 2025-11-21 20:47:32,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 15:48:20] 2025-11-21 20:47:32,327 | INFO     | collected zombie processes
[2025-11-21 15:48:20] 2025-11-21 20:47:32,327 | INFO     | will attempt to kill all subprocesses of pid=522833
[2025-11-21 15:48:20] 2025-11-21 20:47:38,236 | INFO     | process IDs to be killed: [522833] (in reverse order)
[2025-11-21 15:48:20] 2025-11-21 20:47:41,594 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 15:48:20] 2025-11-21 20:47:41,594 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 15:48:20] 2025-11-21 20:47:41,651 | INFO     | did not find any defunct processes belonging to 522833
[2025-11-21 15:48:20] 2025-11-21 20:47:41,711 | INFO     | did not find any defunct processes belonging to 522833
[2025-11-21 15:48:20] 2025-11-21 20:47:41,719 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 15:48:20] 2025-11-21 20:47:41,719 | INFO     | ready for new job
[2025-11-21 15:48:20] 2025-11-21 20:47:41,719 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 15:48:20] 2025-11-21 20:47:41,722 | INFO     | ***************************************
[2025-11-21 15:48:20] 2025-11-21 20:47:41,722 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 15:48:20] 2025-11-21 20:47:41,722 | INFO     | ***************************************
[2025-11-21 15:48:20] 2025-11-21 20:47:41,722 | INFO     | 
[2025-11-21 15:48:20] 2025-11-21 20:47:41,731 | INFO     | architecture information:
[2025-11-21 15:48:20] 2025-11-21 20:47:41,744 | INFO     | executing command: cat /etc/os-release
[2025-11-21 15:48:20] 2025-11-21 20:47:41,877 | INFO     | cat /etc/os-release:
[2025-11-21 15:48:20] NAME="CentOS Linux"
[2025-11-21 15:48:20] VERSION="7 (Core)"
[2025-11-21 15:48:20] ID="centos"
[2025-11-21 15:48:20] ID_LIKE="rhel fedora"
[2025-11-21 15:48:20] VERSION_ID="7"
[2025-11-21 15:48:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 15:48:20] ANSI_COLOR="0;31"
[2025-11-21 15:48:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 15:48:20] HOME_URL="https://www.centos.org/"
[2025-11-21 15:48:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 15:48:20] 
[2025-11-21 15:48:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 15:48:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 15:48:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 15:48:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 15:48:20] 
[2025-11-21 15:48:20] 2025-11-21 20:47:41,877 | INFO     | ***************************************
[2025-11-21 15:48:20] 2025-11-21 20:47:42,381 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-21 15:48:20] 2025-11-21 20:47:42,538 | INFO     | sufficient remaining disk space (154630356992 B)
[2025-11-21 15:48:20] 2025-11-21 20:47:42,539 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 15:48:20] 2025-11-21 20:47:42,539 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 15:48:20] 2025-11-21 20:47:42,539 | INFO     | update_server=False
[2025-11-21 15:48:20] 2025-11-21 20:47:42,540 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 15:48:20] 2025-11-21 20:47:42,690 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 15:48:20] 2025-11-21 20:47:42,771 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 15:48:20] 2025-11-21 20:47:42,771 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 15:48:20] 2025-11-21 20:47:42,771 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:48:20] 2025-11-21 20:47:42,771 | INFO     | will abort loop
[2025-11-21 15:48:20] 2025-11-21 20:47:42,892 | INFO     | all data control threads have been joined
[2025-11-21 15:48:20] 2025-11-21 20:47:43,007 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 15:48:20] 2025-11-21 20:47:43,549 | INFO     | [data] copytool_in thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:43,549 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:43,559 | INFO     | [job] retrieve thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:43,646 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:43,779 | INFO     | [job] job monitor thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:43,827 | INFO     | all payload control threads have been joined
[2025-11-21 15:48:20] 2025-11-21 20:47:43,904 | INFO     | [data] control thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:44,218 | INFO     | all job control threads have been joined
[2025-11-21 15:48:20] 2025-11-21 20:47:44,244 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:48:20] 2025-11-21 20:47:44,455 | INFO     | [job] validate thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:44,455 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:44,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:44,492 | INFO     | [payload] validate_post thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:44,736 | INFO     | [data] copytool_out thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:44,833 | INFO     | [payload] control thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:44,842 | INFO     | [payload] failed_post thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:45,224 | INFO     | [job] control thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:45,252 | INFO     | [job] queue monitor thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:47:47,015 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 15:48:20] 2025-11-21 20:48:09,565 | INFO     | PID=515806 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 15:48:20] 2025-11-21 20:48:09,565 | INFO     | .. there are 111 such processes running
[2025-11-21 15:48:20] 2025-11-21 20:48:09,566 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 15:48:20] 2025-11-21 20:48:09,566 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 15:48:20] 2025-11-21 20:48:09,566 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 15:48:20] 2025-11-21 20:48:10,699 | INFO     | [monitor] cgroup control has ended
[2025-11-21 15:48:20] 2025-11-21 20:48:11,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683222091584)>', '<ExcThread(monitor, started 140682941400832)>']
[2025-11-21 15:48:20] 2025-11-21 20:48:12,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 15:48:20] 2025-11-21 20:48:12,585 | INFO     | [monitor] control thread has ended
[2025-11-21 15:48:20] 2025-11-21 20:48:16,840 | INFO     | all workflow threads have been joined
[2025-11-21 15:48:20] 2025-11-21 20:48:16,840 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 15:48:20] 2025-11-21 20:48:16,840 | INFO     | traces error code: 0
[2025-11-21 15:48:20] 2025-11-21 20:48:16,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 15:48:20] 2025-11-21 20:48:18,045 [wrapper] ==== pilot stdout END ====
[2025-11-21 15:48:20] 2025-11-21 20:48:18,175 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 15:48:20] 2025-11-21 20:48:18,238 [wrapper] pilotpid: 515806
[2025-11-21 15:48:20] 2025-11-21 20:48:18,275 [wrapper] Pilot exit status: 0
[2025-11-21 15:48:20] 2025-11-21 20:48:18,609 [wrapper] pandaids: 6893838313
[2025-11-21 15:48:20] 2025-11-21 20:48:19,286 [wrapper] cleanup supervisor_pilot 2604056 515807
[2025-11-21 15:48:20] 2025-11-21 20:48:19,443 [wrapper] Test setup, not cleaning
[2025-11-21 15:48:20] 2025-11-21 20:48:19,463 [wrapper] apfmon messages muted
[2025-11-21 15:48:20] 2025-11-21 20:48:19,534 [wrapper] ==== wrapper stdout END ====
[2025-11-21 15:48:20] 2025-11-21 20:48:19,668 [wrapper] ==== wrapper stderr END ====
[2025-11-21 15:48:20]  *** Error codes and diagnostics ***
[2025-11-21 15:48:20]     "exeErrorCode": 0,
[2025-11-21 15:48:20]     "exeErrorDiag": "",
[2025-11-21 15:48:20]     "pilotErrorCode": 0,
[2025-11-21 15:48:20]     "pilotErrorDiag": "",
[2025-11-21 15:48:20]  *** Listing of results directory ***
[2025-11-21 15:48:20] total 1322088
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 15:48:20] -rwx------. 1 boincer umatlas     36292 Nov 20 05:17 runpilot2-wrapper.sh
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:17 queuedata.json
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas       100 Nov 21 08:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 15:48:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 08:46 run_atlas
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas       105 Nov 21 08:46 job.xml
[2025-11-21 15:48:20] -rw-r--r--. 2 boincer umatlas 408853031 Nov 21 08:46 EVNT.47493127._000130.pool.root.1
[2025-11-21 15:48:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 08:46 start_atlas.sh
[2025-11-21 15:48:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 08:46 shared
[2025-11-21 15:48:20] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 08:46 input.tar.gz
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas         0 Nov 21 08:46 boinc_lockfile
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 08:46 pandaJob.out
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas        57 Nov 21 08:46 setup.sh.local
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas    989817 Nov 21 08:46 agis_schedconf.cvmfs.json
[2025-11-21 15:48:20] drwx------. 5 boincer umatlas      4096 Nov 21 08:46 pilot3
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas       533 Nov 21 15:04 boinc_task_state.xml
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas      7173 Nov 21 15:40 init_data.xml
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas 931265407 Nov 21 15:45 HITS.47523449._001294.pool.root.1
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas      1049 Nov 21 15:46 memory_monitor_summary.json
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas   1526164 Nov 21 15:46 agis_ddmendpoints.agis.ALL.json
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas   1873022 Nov 21 15:46 log.47523449._001294.job.log.tgz.1
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas      7914 Nov 21 15:47 heartbeat.json
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas        95 Nov 21 15:48 pilot_heartbeat.json
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas      5011 Nov 21 15:48 pilotlog.txt
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas        29 Nov 21 15:48 wrapper_checkpoint.txt
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas   3017566 Nov 21 15:48 log.47523449._001294.job.log.1
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas       353 Nov 21 15:48 output.list
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas       620 Nov 21 15:48 runtime_log
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas   4904960 Nov 21 15:48 result.tar.gz
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas       658 Nov 21 15:48 V9lKDmhuGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEKGKDmc62mim.diag
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas      9335 Nov 21 15:48 runtime_log.err
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 15:48 boinc_mmap_file
[2025-11-21 15:48:20] -rw-r--r--. 1 boincer umatlas     21755 Nov 21 15:48 stderr.txt
[2025-11-21 15:48:20] HITS file was successfully produced:
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas 931265407 Nov 21 15:45 shared/HITS.pool.root.1
[2025-11-21 15:48:20]  *** Contents of shared directory: ***
[2025-11-21 15:48:20] total 1314108
[2025-11-21 15:48:20] -rw-r--r--. 2 boincer umatlas 408853031 Nov 21 08:46 ATLAS.root_0
[2025-11-21 15:48:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 08:46 start_atlas.sh
[2025-11-21 15:48:20] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 08:46 input.tar.gz
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas 931265407 Nov 21 15:45 HITS.pool.root.1
[2025-11-21 15:48:20] -rw-------. 1 boincer umatlas   4904960 Nov 21 15:48 result.tar.gz
15:48:42 (511246): run_atlas exited; CPU time 136085.450787
15:48:42 (511246): called boinc_finish(0)

</stderr_txt>
]]>

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