Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:04:44 (2797511): wrapper (7.7.26015): starting
12:04:44 (2797511): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 12:04:44] Arguments: --nthreads 8
[2025-11-21 12:04:44] Threads: 8
[2025-11-21 12:04:44] Checking for CVMFS
[2025-11-21 12:04:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:04:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:04:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:04:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:04:45] 2.13.2.0 4057 25978 173432 153135 2 104 28040197 39288832 6052 16776704 0 15688855 99.591 13181067 34693 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 12:04:45] CVMFS is ok
[2025-11-21 12:04:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 12:04:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 12:04:45] Further information can be found at the LHC@home message board.
[2025-11-21 12:04:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:04:45] Checking for apptainer binary...
[2025-11-21 12:04:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:04:45] Running /usr/bin/apptainer --version
[2025-11-21 12:04:45] apptainer version 1.4.4-1.el9
[2025-11-21 12:04:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:04:45] c-210-24.aglt2.org
[2025-11-21 12:04:45] apptainer works
[2025-11-21 12:04:45] Set ATHENA_PROC_NUMBER=8
[2025-11-21 12:04:45] Set ATHENA_CORE_NUMBER=8
[2025-11-21 12:04:45] Starting ATLAS job with PandaID=6894245881
[2025-11-21 12:04:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:44:32]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:44:32] 2025-11-23 00:43:42,805 | INFO     | monitor loop #7495: job 0:6894245881 is in state 'finished'
[2025-11-22 19:44:32] 2025-11-23 00:43:42,805 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:44:32] 2025-11-23 00:43:43,815 | INFO     | time since job start (113922s) is within the limit (172800.0s)
[2025-11-22 19:44:32] 2025-11-23 00:43:45,321 | INFO     | monitor loop #7496: job 0:6894245881 is in state 'finished'
[2025-11-22 19:44:32] 2025-11-23 00:43:45,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:44:32] 2025-11-23 00:43:46,766 | INFO     | PID=2801509 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 19:44:32] 2025-11-23 00:43:46,766 | INFO     | .. there are 8 such processes running
[2025-11-22 19:44:32] 2025-11-23 00:43:47,771 | INFO     | time since job start (113926s) is within the limit (172800.0s)
[2025-11-22 19:44:32] 2025-11-23 00:43:47,907 | INFO     | monitor loop #7497: job 0:6894245881 is in state 'finished'
[2025-11-22 19:44:32] 2025-11-23 00:43:47,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:44:32] 2025-11-23 00:43:49,778 | INFO     | time since job start (113928s) is within the limit (172800.0s)
[2025-11-22 19:44:32] 2025-11-23 00:43:50,413 | INFO     | monitor loop #7498: job 0:6894245881 is in state 'finished'
[2025-11-22 19:44:32] 2025-11-23 00:43:50,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:44:32] 2025-11-23 00:43:51,785 | INFO     | time since job start (113930s) is within the limit (172800.0s)
[2025-11-22 19:44:32] 2025-11-23 00:43:52,920 | INFO     | monitor loop #7499: job 0:6894245881 is in state 'finished'
[2025-11-22 19:44:32] 2025-11-23 00:43:52,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:44:32] 2025-11-23 00:43:53,792 | INFO     | time since job start (113932s) is within the limit (172800.0s)
[2025-11-22 19:44:32] 2025-11-23 00:43:54,035 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 19:44:32] 2025-11-23 00:43:54,048 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0535
[2025-11-22 19:44:32] 2025-11-23 00:43:54,063 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894245881/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:44:32] 2025-11-23 00:43:54,064 | INFO     | extracted standard info from prmon json
[2025-11-22 19:44:32] 2025-11-23 00:43:54,064 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:44:32] 2025-11-23 00:43:54,069 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:44:32] 2025-11-23 00:43:54,144 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:44:32] 2025-11-23 00:43:54,156 | INFO     | sum of square deviations: 2017671065002.7776
[2025-11-22 19:44:32] 2025-11-23 00:43:54,248 | INFO     | sum of deviations: 5086432956067.93
[2025-11-22 19:44:32] 2025-11-23 00:43:54,248 | INFO     | mean x: 1763801651.5865023
[2025-11-22 19:44:32] 2025-11-23 00:43:54,248 | INFO     | mean y: 2944533.2356722015
[2025-11-22 19:44:32] 2025-11-23 00:43:54,249 | INFO     | intersect: -4443498201.762007
[2025-11-22 19:44:32] 2025-11-23 00:43:54,251 | INFO     | chi2: 16.08305667226238
[2025-11-22 19:44:32] 2025-11-23 00:43:54,254 | INFO     | sum of square deviations: 2001503450704.176
[2025-11-22 19:44:32] 2025-11-23 00:43:54,496 | INFO     | sum of deviations: 5702739852074.0625
[2025-11-22 19:44:32] 2025-11-23 00:43:54,496 | INFO     | mean x: 1763801499.0950592
[2025-11-22 19:44:32] 2025-11-23 00:43:54,496 | INFO     | mean y: 2950345.440386681
[2025-11-22 19:44:32] 2025-11-23 00:43:54,496 | INFO     | intersect: -5022522429.287306
[2025-11-22 19:44:32] 2025-11-23 00:43:54,546 | INFO     | chi2: 13.058385129779408
[2025-11-22 19:44:32] 2025-11-23 00:43:54,547 | INFO     | current chi2=13.058385129779408 (change=18.806571437999516 %)
[2025-11-22 19:44:32] 2025-11-23 00:43:54,547 | INFO     | right removable region: 1861
[2025-11-22 19:44:32] 2025-11-23 00:43:54,599 | INFO     | sum of square deviations: 2001499707554.9846
[2025-11-22 19:44:32] 2025-11-23 00:43:54,732 | INFO     | sum of deviations: 4563299677242.596
[2025-11-22 19:44:32] 2025-11-23 00:43:54,733 | INFO     | mean x: 1763801804.095596
[2025-11-22 19:44:32] 2025-11-23 00:43:54,733 | INFO     | mean y: 2949463.901181525
[2025-11-22 19:44:32] 2025-11-23 00:43:54,733 | INFO     | intersect: -4018413203.786457
[2025-11-22 19:44:32] 2025-11-23 00:43:54,736 | INFO     | chi2: 13.974835245034965
[2025-11-22 19:44:32] 2025-11-23 00:43:54,736 | INFO     | current chi2=13.974835245034965 (change=13.108337986916105 %)
[2025-11-22 19:44:32] 2025-11-23 00:43:54,736 | INFO     | left removable region: 10
[2025-11-22 19:44:32] 2025-11-23 00:43:54,739 | INFO     | sum of square deviations: 1966231898972.3528
[2025-11-22 19:44:32] 2025-11-23 00:43:54,824 | INFO     | sum of deviations: 5146347232169.539
[2025-11-22 19:44:32] 2025-11-23 00:43:54,824 | INFO     | mean x: 1763801773.6148028
[2025-11-22 19:44:32] 2025-11-23 00:43:54,825 | INFO     | mean y: 2957824.717450027
[2025-11-22 19:44:32] 2025-11-23 00:43:54,825 | INFO     | intersect: -4613555812.601938
[2025-11-22 19:44:32] 2025-11-23 00:43:54,827 | INFO     | chi2: 10.331645246054393
[2025-11-22 19:44:32] 2025-11-23 00:43:54,828 | INFO     | current memory leak: 2.62 B/s (using 1851 data points, chi2=10.33)
[2025-11-22 19:44:32] 2025-11-23 00:43:54,829 | INFO     | could have reported an average CPU frequency of 2599 MHz (65 samples)
[2025-11-22 19:44:32] 2025-11-23 00:43:54,830 | INFO     | ..............................
[2025-11-22 19:44:32] 2025-11-23 00:43:54,830 | INFO     | . Timing measurements:
[2025-11-22 19:44:32] 2025-11-23 00:43:54,830 | INFO     | . get job = 0 s
[2025-11-22 19:44:32] 2025-11-23 00:43:54,830 | INFO     | . initial setup = 3 s
[2025-11-22 19:44:32] 2025-11-23 00:43:54,830 | INFO     | . payload setup = 8 s
[2025-11-22 19:44:32] 2025-11-23 00:43:54,830 | INFO     | . stage-in = 0 s
[2025-11-22 19:44:32] 2025-11-23 00:43:54,830 | INFO     | . payload execution = 113852 s
[2025-11-22 19:44:32] 2025-11-23 00:43:54,831 | INFO     | . stage-out = 16 s
[2025-11-22 19:44:32] 2025-11-23 00:43:54,831 | INFO     | . log creation = 4 s
[2025-11-22 19:44:32] 2025-11-23 00:43:54,831 | INFO     | ..............................
[2025-11-22 19:44:32] 2025-11-23 00:43:55,101 | INFO     | 
[2025-11-22 19:44:32] 2025-11-23 00:43:55,102 | INFO     | job summary report
[2025-11-22 19:44:32] 2025-11-23 00:43:55,103 | INFO     | --------------------------------------------------
[2025-11-22 19:44:32] 2025-11-23 00:43:55,103 | INFO     | PanDA job id: 6894245881
[2025-11-22 19:44:32] 2025-11-23 00:43:55,103 | INFO     | task id: 47533967
[2025-11-22 19:44:32] 2025-11-23 00:43:55,103 | INFO     | errors: (none)
[2025-11-22 19:44:32] 2025-11-23 00:43:55,103 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:44:32] 2025-11-23 00:43:55,103 | INFO     | pilot state: finished 
[2025-11-22 19:44:32] 2025-11-23 00:43:55,103 | INFO     | transexitcode: 0
[2025-11-22 19:44:32] 2025-11-23 00:43:55,103 | INFO     | exeerrorcode: 0
[2025-11-22 19:44:32] 2025-11-23 00:43:55,104 | INFO     | exeerrordiag: 
[2025-11-22 19:44:32] 2025-11-23 00:43:55,104 | INFO     | exitcode: 0
[2025-11-22 19:44:32] 2025-11-23 00:43:55,104 | INFO     | exitmsg: OK
[2025-11-22 19:44:32] 2025-11-23 00:43:55,104 | INFO     | cpuconsumptiontime: 314029 s
[2025-11-22 19:44:32] 2025-11-23 00:43:55,104 | INFO     | nevents: 1000
[2025-11-22 19:44:32] 2025-11-23 00:43:55,104 | INFO     | neventsw: 0
[2025-11-22 19:44:32] 2025-11-23 00:43:55,104 | INFO     | pid: 2808022
[2025-11-22 19:44:32] 2025-11-23 00:43:55,104 | INFO     | pgrp: 2808022
[2025-11-22 19:44:32] 2025-11-23 00:43:55,105 | INFO     | corecount: 8
[2025-11-22 19:44:32] 2025-11-23 00:43:55,105 | INFO     | event service: False
[2025-11-22 19:44:32] 2025-11-23 00:43:55,105 | INFO     | sizes: {0: 2298634, 1: 2298833, 2: 2298833, 7: 2299123, 12: 2299151, 113864: 2379237, 113865: 2379364, 113881: 2388414, 113883: 2388470, 113916: 2388812}
[2025-11-22 19:44:32] 2025-11-23 00:43:55,105 | INFO     | --------------------------------------------------
[2025-11-22 19:44:32] 2025-11-23 00:43:55,105 | INFO     | 
[2025-11-22 19:44:32] 2025-11-23 00:43:55,105 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 19:44:32] 2025-11-23 00:43:55,397 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,398 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,398 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,398 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,398 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,398 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,398 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,399 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,399 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,399 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,399 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,399 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,399 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,399 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,399 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,400 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,400 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,400 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:44:32] 2025-11-23 00:43:55,400 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,400 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:44:32] 2025-11-23 00:43:55,400 | INFO     | job 6894245881 has completed (purged errors)
[2025-11-22 19:44:32] 2025-11-23 00:43:55,401 | INFO     | overall cleanup function is called
[2025-11-22 19:44:32] 2025-11-23 00:43:56,596 | INFO     | --- collectZombieJob: --- 10, [2808022]
[2025-11-22 19:44:32] 2025-11-23 00:43:56,596 | INFO     | zombie collector waiting for pid 2808022
[2025-11-22 19:44:32] 2025-11-23 00:43:56,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:44:32] 2025-11-23 00:43:56,597 | INFO     | collected zombie processes
[2025-11-22 19:44:32] 2025-11-23 00:43:56,597 | INFO     | will attempt to kill all subprocesses of pid=2808022
[2025-11-22 19:44:32] 2025-11-23 00:43:57,704 | INFO     | process IDs to be killed: [2808022] (in reverse order)
[2025-11-22 19:44:32] 2025-11-23 00:43:57,958 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:44:32] 2025-11-23 00:43:57,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:44:32] 2025-11-23 00:43:57,983 | INFO     | did not find any defunct processes belonging to 2808022
[2025-11-22 19:44:32] 2025-11-23 00:43:58,002 | INFO     | did not find any defunct processes belonging to 2808022
[2025-11-22 19:44:32] 2025-11-23 00:43:58,014 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:44:32] 2025-11-23 00:43:58,014 | INFO     | ready for new job
[2025-11-22 19:44:32] 2025-11-23 00:43:58,014 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:44:32] 2025-11-23 00:43:58,084 | INFO     | ***************************************
[2025-11-22 19:44:32] 2025-11-23 00:43:58,085 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:44:32] 2025-11-23 00:43:58,085 | INFO     | ***************************************
[2025-11-22 19:44:32] 2025-11-23 00:43:58,085 | INFO     | 
[2025-11-22 19:44:32] 2025-11-23 00:43:58,087 | INFO     | architecture information:
[2025-11-22 19:44:32] 2025-11-23 00:43:58,114 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:44:32] 2025-11-23 00:43:58,163 | INFO     | cat /etc/os-release:
[2025-11-22 19:44:32] NAME="CentOS Linux"
[2025-11-22 19:44:32] VERSION="7 (Core)"
[2025-11-22 19:44:32] ID="centos"
[2025-11-22 19:44:32] ID_LIKE="rhel fedora"
[2025-11-22 19:44:32] VERSION_ID="7"
[2025-11-22 19:44:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:44:32] ANSI_COLOR="0;31"
[2025-11-22 19:44:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:44:32] HOME_URL="https://www.centos.org/"
[2025-11-22 19:44:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:44:32] 
[2025-11-22 19:44:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:44:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:44:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:44:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:44:32] 
[2025-11-22 19:44:32] 2025-11-23 00:43:58,164 | INFO     | ***************************************
[2025-11-22 19:44:32] 2025-11-23 00:43:58,666 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 19:44:32] 2025-11-23 00:43:58,721 | INFO     | sufficient remaining disk space (49689919488 B)
[2025-11-22 19:44:32] 2025-11-23 00:43:58,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:44:32] 2025-11-23 00:43:58,722 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:44:32] 2025-11-23 00:43:58,722 | INFO     | update_server=False
[2025-11-22 19:44:32] 2025-11-23 00:43:58,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:44:32] 2025-11-23 00:43:58,828 | INFO     | all payload control threads have been joined
[2025-11-22 19:44:32] 2025-11-23 00:43:58,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:44:32] 2025-11-23 00:43:58,961 | INFO     | aborting loop
[2025-11-22 19:44:32] 2025-11-23 00:43:58,992 | INFO     | all data control threads have been joined
[2025-11-22 19:44:32] 2025-11-23 00:43:59,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:44:32] 2025-11-23 00:43:59,744 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:43:59,834 | INFO     | [payload] control thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:43:59,843 | INFO     | all job control threads have been joined
[2025-11-22 19:44:32] 2025-11-23 00:43:59,892 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:44:32] 2025-11-23 00:43:59,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:44:32] 2025-11-23 00:43:59,968 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:43:59,997 | INFO     | [data] control thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:00,002 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:00,027 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:00,090 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:00,182 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:00,195 | INFO     | [job] validate thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:00,575 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:00,850 | INFO     | [job] control thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:00,967 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:01,007 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:01,011 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:01,197 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:03,901 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:44:32] 2025-11-23 00:44:23,450 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:44:32] 2025-11-23 00:44:24,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140421865867072)>', '<ExcThread(monitor, started 140421363640064)>']
[2025-11-22 19:44:32] 2025-11-23 00:44:28,446 | INFO     | PID=2801509 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 19:44:32] 2025-11-23 00:44:28,446 | INFO     | .. there are 8 such processes running
[2025-11-22 19:44:32] 2025-11-23 00:44:28,447 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:44:32] 2025-11-23 00:44:28,447 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:44:32] 2025-11-23 00:44:28,447 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:44:32] 2025-11-23 00:44:28,448 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:44:32] 2025-11-23 00:44:28,448 | INFO     | [monitor] control thread has ended
[2025-11-22 19:44:32] 2025-11-23 00:44:29,711 | INFO     | all workflow threads have been joined
[2025-11-22 19:44:32] 2025-11-23 00:44:29,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:44:32] 2025-11-23 00:44:29,712 | INFO     | traces error code: 0
[2025-11-22 19:44:32] 2025-11-23 00:44:29,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:44:32] 2025-11-23 00:44:30,333 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:44:32] 2025-11-23 00:44:30,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:44:32] 2025-11-23 00:44:30,387 [wrapper] pilotpid: 2801509
[2025-11-22 19:44:32] 2025-11-23 00:44:30,443 [wrapper] Pilot exit status: 0
[2025-11-22 19:44:32] 2025-11-23 00:44:30,608 [wrapper] pandaids: 6894245881
[2025-11-22 19:44:32] 2025-11-23 00:44:31,636 [wrapper] cleanup supervisor_pilot 1215173 2801510
[2025-11-22 19:44:32] 2025-11-23 00:44:31,675 [wrapper] Test setup, not cleaning
[2025-11-22 19:44:32] 2025-11-23 00:44:31,710 [wrapper] apfmon messages muted
[2025-11-22 19:44:32] 2025-11-23 00:44:31,908 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:44:32] 2025-11-23 00:44:31,944 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:44:32]  *** Error codes and diagnostics ***
[2025-11-22 19:44:32]     "exeErrorCode": 0,
[2025-11-22 19:44:32]     "exeErrorDiag": "",
[2025-11-22 19:44:32]     "pilotErrorCode": 0,
[2025-11-22 19:44:32]     "pilotErrorDiag": "",
[2025-11-22 19:44:32]  *** Listing of results directory ***
[2025-11-22 19:44:32] total 1342916
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 20:08 pilot3.tar.gz
[2025-11-22 19:44:32] -rwx------. 1 boincer umatlas     36292 Nov 20 20:22 runpilot2-wrapper.sh
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 20:22 queuedata.json
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas       100 Nov 21 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:44:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 12:04 run_atlas
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas       105 Nov 21 12:04 job.xml
[2025-11-22 19:44:32] -rw-r--r--. 2 boincer umatlas 407992713 Nov 21 12:04 EVNT.47493127._002086.pool.root.1
[2025-11-22 19:44:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 12:04 start_atlas.sh
[2025-11-22 19:44:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 12:04 shared
[2025-11-22 19:44:32] -rw-r--r--. 2 boincer umatlas    590096 Nov 21 12:04 input.tar.gz
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas         0 Nov 21 12:04 boinc_lockfile
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 12:04 pandaJob.out
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas        57 Nov 21 12:04 setup.sh.local
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas    989798 Nov 21 12:04 agis_schedconf.cvmfs.json
[2025-11-22 19:44:32] drwx------. 5 boincer umatlas      4096 Nov 21 12:05 pilot3
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas       533 Nov 22 19:06 boinc_task_state.xml
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas      6659 Nov 22 19:40 init_data.xml
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas 927159080 Nov 22 19:41 HITS.47533967._000572.pool.root.1
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas      1057 Nov 22 19:42 memory_monitor_summary.json
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas   1526164 Nov 22 19:43 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas   2820326 Nov 22 19:43 log.47533967._000572.job.log.tgz.1
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas      8633 Nov 22 19:43 heartbeat.json
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas        95 Nov 22 19:44 pilot_heartbeat.json
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas      4823 Nov 22 19:44 pilotlog.txt
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 19:44 boinc_mmap_file
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas  15208454 Nov 22 19:44 log.47533967._000572.job.log.1
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas        29 Nov 22 19:44 wrapper_checkpoint.txt
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas       353 Nov 22 19:44 output.list
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas       620 Nov 22 19:44 runtime_log
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas  18053120 Nov 22 19:44 result.tar.gz
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas       662 Nov 22 19:44 zroNDmB2Ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7nIKDmOI0qvm.diag
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas      9344 Nov 22 19:44 runtime_log.err
[2025-11-22 19:44:32] -rw-r--r--. 1 boincer umatlas     21880 Nov 22 19:44 stderr.txt
[2025-11-22 19:44:32] HITS file was successfully produced:
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas 927159080 Nov 22 19:41 shared/HITS.pool.root.1
[2025-11-22 19:44:32]  *** Contents of shared directory: ***
[2025-11-22 19:44:32] total 1322100
[2025-11-22 19:44:32] -rw-r--r--. 2 boincer umatlas 407992713 Nov 21 12:04 ATLAS.root_0
[2025-11-22 19:44:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 12:04 start_atlas.sh
[2025-11-22 19:44:32] -rw-r--r--. 2 boincer umatlas    590096 Nov 21 12:04 input.tar.gz
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas 927159080 Nov 22 19:41 HITS.pool.root.1
[2025-11-22 19:44:32] -rw-------. 1 boincer umatlas  18053120 Nov 22 19:44 result.tar.gz
19:44:54 (2797511): run_atlas exited; CPU time 315723.352833
19:44:54 (2797511): called boinc_finish(0)

</stderr_txt>
]]>

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