Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:19:27 (4047763): wrapper (7.7.26015): starting
11:19:27 (4047763): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 11:19:27] Arguments: --nthreads 12
[2025-11-21 11:19:27] Threads: 12
[2025-11-21 11:19:27] Checking for CVMFS
[2025-11-21 11:19:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 11:19:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 11:19:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 11:19:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 11:19:28] 2.13.3.0 11959 23083 349108 153135 0 180 23225236 32935937 17601 16776704 0 85274313 99.486 115919425 34553 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 11:19:28] CVMFS is ok
[2025-11-21 11:19:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 11:19:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 11:19:28] Further information can be found at the LHC@home message board.
[2025-11-21 11:19:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 11:19:28] Checking for apptainer binary...
[2025-11-21 11:19:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 11:19:28] Running /usr/bin/apptainer --version
[2025-11-21 11:19:28] apptainer version 1.4.4-1.el9
[2025-11-21 11:19:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 11:19:28] c6-8-25-4.aglt2.org
[2025-11-21 11:19:28] apptainer works
[2025-11-21 11:19:28] Set ATHENA_PROC_NUMBER=12
[2025-11-21 11:19:28] Set ATHENA_CORE_NUMBER=12
[2025-11-21 11:19:28] Starting ATLAS job with PandaID=6893876405
[2025-11-21 11:19:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 07:38:07]  *** The last 200 lines of the pilot log: ***
[2025-11-22 07:38:07] 2025-11-22 12:37:12,479 | INFO     | time since job start (73050s) is within the limit (172800.0s)
[2025-11-22 07:38:07] 2025-11-22 12:37:14,485 | INFO     | time since job start (73052s) is within the limit (172800.0s)
[2025-11-22 07:38:07] 2025-11-22 12:37:14,519 | INFO     | monitor loop #3729: job 0:6893876405 is in state 'finished'
[2025-11-22 07:38:07] 2025-11-22 12:37:14,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 07:38:07] 2025-11-22 12:37:16,492 | INFO     | time since job start (73054s) is within the limit (172800.0s)
[2025-11-22 07:38:07] 2025-11-22 12:37:17,030 | INFO     | monitor loop #3730: job 0:6893876405 is in state 'finished'
[2025-11-22 07:38:07] 2025-11-22 12:37:17,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 07:38:07] 2025-11-22 12:37:18,498 | INFO     | time since job start (73056s) is within the limit (172800.0s)
[2025-11-22 07:38:07] 2025-11-22 12:37:19,535 | INFO     | monitor loop #3731: job 0:6893876405 is in state 'finished'
[2025-11-22 07:38:07] 2025-11-22 12:37:19,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 07:38:07] 2025-11-22 12:37:20,505 | INFO     | time since job start (73058s) is within the limit (172800.0s)
[2025-11-22 07:38:07] 2025-11-22 12:37:22,047 | INFO     | monitor loop #3732: job 0:6893876405 is in state 'finished'
[2025-11-22 07:38:07] 2025-11-22 12:37:22,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 07:38:07] 2025-11-22 12:37:22,512 | INFO     | time since job start (73060s) is within the limit (172800.0s)
[2025-11-22 07:38:07] 2025-11-22 12:37:23,258 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 07:38:07] 2025-11-22 12:37:23,323 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2718.701760416666
[2025-11-22 07:38:07] 2025-11-22 12:37:23,418 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893876405/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:38:07] 2025-11-22 12:37:23,424 | INFO     | extracted standard info from prmon json
[2025-11-22 07:38:07] 2025-11-22 12:37:23,424 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 07:38:07] 2025-11-22 12:37:23,425 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 07:38:07] 2025-11-22 12:37:23,590 | INFO     | fitting pss+swap vs Time
[2025-11-22 07:38:07] 2025-11-22 12:37:23,610 | INFO     | sum of square deviations: 531900013451.5652
[2025-11-22 07:38:07] 2025-11-22 12:37:23,670 | INFO     | sum of deviations: 1360967585612.3564
[2025-11-22 07:38:07] 2025-11-22 12:37:23,671 | INFO     | mean x: 1763778495.764411
[2025-11-22 07:38:07] 2025-11-22 12:37:23,671 | INFO     | mean y: 3560381.9941520467
[2025-11-22 07:38:07] 2025-11-22 12:37:23,671 | INFO     | intersect: -4509403145.415251
[2025-11-22 07:38:07] 2025-11-22 12:37:23,673 | INFO     | chi2: 21.419597511965744
[2025-11-22 07:38:07] 2025-11-22 12:37:23,679 | INFO     | sum of square deviations: 525265492438.3015
[2025-11-22 07:38:07] 2025-11-22 12:37:23,731 | INFO     | sum of deviations: 1884390307687.9104
[2025-11-22 07:38:07] 2025-11-22 12:37:23,774 | INFO     | mean x: 1763778343.2877517
[2025-11-22 07:38:07] 2025-11-22 12:37:23,774 | INFO     | mean y: 3572409.802013423
[2025-11-22 07:38:07] 2025-11-22 12:37:23,774 | INFO     | intersect: -6323983583.973229
[2025-11-22 07:38:07] 2025-11-22 12:37:23,776 | INFO     | chi2: 17.67344132482564
[2025-11-22 07:38:07] 2025-11-22 12:37:23,776 | INFO     | current chi2=17.67344132482564 (change=17.489386460447587 %)
[2025-11-22 07:38:07] 2025-11-22 12:37:23,776 | INFO     | right removable region: 1191
[2025-11-22 07:38:07] 2025-11-22 12:37:23,828 | INFO     | sum of square deviations: 525261502133.87604
[2025-11-22 07:38:07] 2025-11-22 12:37:24,089 | INFO     | sum of deviations: 978159147559.8673
[2025-11-22 07:38:07] 2025-11-22 12:37:24,089 | INFO     | mean x: 1763778648.2869127
[2025-11-22 07:38:07] 2025-11-22 12:37:24,090 | INFO     | mean y: 3569166.786912752
[2025-11-22 07:38:07] 2025-11-22 12:37:24,090 | INFO     | intersect: -3280997115.1198406
[2025-11-22 07:38:07] 2025-11-22 12:37:24,114 | INFO     | chi2: 19.41087040864458
[2025-11-22 07:38:07] 2025-11-22 12:37:24,115 | INFO     | current chi2=19.41087040864458 (change=9.377987154982803 %)
[2025-11-22 07:38:07] 2025-11-22 12:37:24,115 | INFO     | left removable region: 10
[2025-11-22 07:38:07] 2025-11-22 12:37:24,116 | INFO     | sum of square deviations: 510856628278.132
[2025-11-22 07:38:07] 2025-11-22 12:37:24,372 | INFO     | sum of deviations: 1486525056633.3066
[2025-11-22 07:38:07] 2025-11-22 12:37:24,373 | INFO     | mean x: 1763778617.8357325
[2025-11-22 07:38:07] 2025-11-22 12:37:24,373 | INFO     | mean y: 3586336.6562235393
[2025-11-22 07:38:07] 2025-11-22 12:37:24,373 | INFO     | intersect: -5128775591.589922
[2025-11-22 07:38:07] 2025-11-22 12:37:24,400 | INFO     | chi2: 14.867392331793859
[2025-11-22 07:38:07] 2025-11-22 12:37:24,400 | INFO     | current memory leak: 2.91 B/s (using 1181 data points, chi2=14.87)
[2025-11-22 07:38:07] 2025-11-22 12:37:24,402 | INFO     | could have reported an average CPU frequency of 2654 MHz (43 samples)
[2025-11-22 07:38:07] 2025-11-22 12:37:24,402 | INFO     | ..............................
[2025-11-22 07:38:07] 2025-11-22 12:37:24,402 | INFO     | . Timing measurements:
[2025-11-22 07:38:07] 2025-11-22 12:37:24,402 | INFO     | . get job = 0 s
[2025-11-22 07:38:07] 2025-11-22 12:37:24,402 | INFO     | . initial setup = 2 s
[2025-11-22 07:38:07] 2025-11-22 12:37:24,402 | INFO     | . payload setup = 7 s
[2025-11-22 07:38:07] 2025-11-22 12:37:24,403 | INFO     | . stage-in = 0 s
[2025-11-22 07:38:07] 2025-11-22 12:37:24,403 | INFO     | . payload execution = 72984 s
[2025-11-22 07:38:07] 2025-11-22 12:37:24,403 | INFO     | . stage-out = 12 s
[2025-11-22 07:38:07] 2025-11-22 12:37:24,403 | INFO     | . log creation = 2 s
[2025-11-22 07:38:07] 2025-11-22 12:37:24,403 | INFO     | ..............................
[2025-11-22 07:38:07] 2025-11-22 12:37:24,613 | INFO     | time since job start (73062s) is within the limit (172800.0s)
[2025-11-22 07:38:07] 2025-11-22 12:37:25,597 | INFO     | 
[2025-11-22 07:38:07] 2025-11-22 12:37:25,597 | INFO     | job summary report
[2025-11-22 07:38:07] 2025-11-22 12:37:25,597 | INFO     | --------------------------------------------------
[2025-11-22 07:38:07] 2025-11-22 12:37:25,597 | INFO     | PanDA job id: 6893876405
[2025-11-22 07:38:07] 2025-11-22 12:37:25,597 | INFO     | task id: 47523449
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | errors: (none)
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | pilot state: finished 
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | transexitcode: 0
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | exeerrorcode: 0
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | exeerrordiag: 
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | exitcode: 0
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | exitmsg: OK
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | cpuconsumptiontime: 263839 s
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | nevents: 1000
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | neventsw: 0
[2025-11-22 07:38:07] 2025-11-22 12:37:25,598 | INFO     | pid: 4060253
[2025-11-22 07:38:07] 2025-11-22 12:37:25,599 | INFO     | pgrp: 4060253
[2025-11-22 07:38:07] 2025-11-22 12:37:25,599 | INFO     | corecount: 12
[2025-11-22 07:38:07] 2025-11-22 12:37:25,599 | INFO     | event service: False
[2025-11-22 07:38:07] 2025-11-22 12:37:25,599 | INFO     | sizes: {0: 2297928, 1: 2298784, 7: 2299046, 12: 2299074, 72995: 2355948, 72996: 2355947, 73009: 2365125, 73010: 2365181, 73046: 2365427}
[2025-11-22 07:38:07] 2025-11-22 12:37:25,599 | INFO     | --------------------------------------------------
[2025-11-22 07:38:07] 2025-11-22 12:37:25,599 | INFO     | 
[2025-11-22 07:38:07] 2025-11-22 12:37:25,599 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 07:38:07] 2025-11-22 12:37:25,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,776 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 07:38:07] 2025-11-22 12:37:25,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,776 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 07:38:07] 2025-11-22 12:37:25,776 | INFO     | job 6893876405 has completed (purged errors)
[2025-11-22 07:38:07] 2025-11-22 12:37:25,776 | INFO     | overall cleanup function is called
[2025-11-22 07:38:07] 2025-11-22 12:37:26,810 | INFO     | --- collectZombieJob: --- 10, [4060253]
[2025-11-22 07:38:07] 2025-11-22 12:37:26,810 | INFO     | zombie collector waiting for pid 4060253
[2025-11-22 07:38:07] 2025-11-22 12:37:26,810 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 07:38:07] 2025-11-22 12:37:26,810 | INFO     | collected zombie processes
[2025-11-22 07:38:07] 2025-11-22 12:37:26,810 | INFO     | will attempt to kill all subprocesses of pid=4060253
[2025-11-22 07:38:07] 2025-11-22 12:37:28,770 | INFO     | process IDs to be killed: [4060253] (in reverse order)
[2025-11-22 07:38:07] 2025-11-22 12:37:30,542 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 07:38:07] 2025-11-22 12:37:30,542 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 07:38:07] 2025-11-22 12:37:31,069 | INFO     | did not find any defunct processes belonging to 4060253
[2025-11-22 07:38:07] 2025-11-22 12:37:31,209 | INFO     | did not find any defunct processes belonging to 4060253
[2025-11-22 07:38:07] 2025-11-22 12:37:31,227 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 07:38:07] 2025-11-22 12:37:31,227 | INFO     | ready for new job
[2025-11-22 07:38:07] 2025-11-22 12:37:31,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 07:38:07] 2025-11-22 12:37:31,236 | INFO     | ***************************************
[2025-11-22 07:38:07] 2025-11-22 12:37:31,237 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 07:38:07] 2025-11-22 12:37:31,237 | INFO     | ***************************************
[2025-11-22 07:38:07] 2025-11-22 12:37:31,237 | INFO     | 
[2025-11-22 07:38:07] 2025-11-22 12:37:31,242 | INFO     | architecture information:
[2025-11-22 07:38:07] 2025-11-22 12:37:31,250 | INFO     | executing command: cat /etc/os-release
[2025-11-22 07:38:07] 2025-11-22 12:37:31,359 | INFO     | cat /etc/os-release:
[2025-11-22 07:38:07] NAME="CentOS Linux"
[2025-11-22 07:38:07] VERSION="7 (Core)"
[2025-11-22 07:38:07] ID="centos"
[2025-11-22 07:38:07] ID_LIKE="rhel fedora"
[2025-11-22 07:38:07] VERSION_ID="7"
[2025-11-22 07:38:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 07:38:07] ANSI_COLOR="0;31"
[2025-11-22 07:38:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 07:38:07] HOME_URL="https://www.centos.org/"
[2025-11-22 07:38:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 07:38:07] 
[2025-11-22 07:38:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 07:38:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 07:38:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 07:38:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 07:38:07] 
[2025-11-22 07:38:07] 2025-11-22 12:37:31,360 | INFO     | ***************************************
[2025-11-22 07:38:07] 2025-11-22 12:37:31,863 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 07:38:07] 2025-11-22 12:37:31,964 | INFO     | sufficient remaining disk space (64524124160 B)
[2025-11-22 07:38:07] 2025-11-22 12:37:31,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 07:38:07] 2025-11-22 12:37:31,965 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 07:38:07] 2025-11-22 12:37:31,965 | INFO     | update_server=False
[2025-11-22 07:38:07] 2025-11-22 12:37:31,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 07:38:07] 2025-11-22 12:37:31,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 07:38:07] 2025-11-22 12:37:31,966 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 07:38:07] 2025-11-22 12:37:32,116 | INFO     | all data control threads have been joined
[2025-11-22 07:38:07] 2025-11-22 12:37:32,175 | INFO     | all job control threads have been joined
[2025-11-22 07:38:07] 2025-11-22 12:37:32,240 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 07:38:07] 2025-11-22 12:37:32,240 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 07:38:07] 2025-11-22 12:37:32,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:38:07] 2025-11-22 12:37:32,240 | INFO     | will abort loop
[2025-11-22 07:38:07] 2025-11-22 12:37:32,986 | INFO     | [job] retrieve thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,121 | INFO     | [data] control thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,161 | INFO     | [payload] validate_post thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,181 | INFO     | [job] control thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,251 | INFO     | [job] job monitor thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,400 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,434 | INFO     | all payload control threads have been joined
[2025-11-22 07:38:07] 2025-11-22 12:37:33,507 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,519 | INFO     | [job] validate thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,827 | INFO     | [payload] failed_post thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,841 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:33,975 | INFO     | [data] copytool_out thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:34,228 | INFO     | [data] copytool_in thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:34,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:38:07] 2025-11-22 12:37:34,440 | INFO     | [payload] control thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:34,450 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:35,258 | INFO     | [job] queue monitor thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:37:35,996 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 07:38:07] 2025-11-22 12:38:00,128 | INFO     | PID=4051461 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 07:38:07] 2025-11-22 12:38:00,129 | INFO     | .. there are 46 such processes running
[2025-11-22 07:38:07] 2025-11-22 12:38:00,135 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 07:38:07] 2025-11-22 12:38:00,135 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 07:38:07] 2025-11-22 12:38:00,135 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 07:38:07] 2025-11-22 12:38:00,273 | INFO     | [monitor] cgroup control has ended
[2025-11-22 07:38:07] 2025-11-22 12:38:01,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140270457202496)>', '<ExcThread(monitor, started 140269588567808)>']
[2025-11-22 07:38:07] 2025-11-22 12:38:02,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 07:38:07] 2025-11-22 12:38:02,147 | INFO     | [monitor] control thread has ended
[2025-11-22 07:38:07] 2025-11-22 12:38:06,359 | INFO     | all workflow threads have been joined
[2025-11-22 07:38:07] 2025-11-22 12:38:06,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 07:38:07] 2025-11-22 12:38:06,359 | INFO     | traces error code: 0
[2025-11-22 07:38:07] 2025-11-22 12:38:06,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 07:38:07] 2025-11-22 12:38:07,034 [wrapper] ==== pilot stdout END ====
[2025-11-22 07:38:07] 2025-11-22 12:38:07,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 07:38:07] 2025-11-22 12:38:07,100 [wrapper] pilotpid: 4051461
[2025-11-22 07:38:07] 2025-11-22 12:38:07,125 [wrapper] Pilot exit status: 0
[2025-11-22 07:38:07] 2025-11-22 12:38:07,230 [wrapper] pandaids: 6893876405
[2025-11-22 07:38:07] 2025-11-22 12:38:07,411 [wrapper] cleanup supervisor_pilot  936294 4051462
[2025-11-22 07:38:07] 2025-11-22 12:38:07,423 [wrapper] Test setup, not cleaning
[2025-11-22 07:38:07] 2025-11-22 12:38:07,434 [wrapper] apfmon messages muted
[2025-11-22 07:38:07] 2025-11-22 12:38:07,456 [wrapper] ==== wrapper stdout END ====
[2025-11-22 07:38:07] 2025-11-22 12:38:07,471 [wrapper] ==== wrapper stderr END ====
[2025-11-22 07:38:07]  *** Error codes and diagnostics ***
[2025-11-22 07:38:07]     "exeErrorCode": 0,
[2025-11-22 07:38:07]     "exeErrorDiag": "",
[2025-11-22 07:38:07]     "pilotErrorCode": 0,
[2025-11-22 07:38:07]     "pilotErrorDiag": "",
[2025-11-22 07:38:07]  *** Listing of results directory ***
[2025-11-22 07:38:08] total 1327108
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 11:47 pilot3.tar.gz
[2025-11-22 07:38:08] -rwx------. 1 boincer umatlas     36292 Nov 20 11:56 runpilot2-wrapper.sh
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 11:56 queuedata.json
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas       100 Nov 21 11:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 07:38:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 11:19 run_atlas
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas       105 Nov 21 11:19 job.xml
[2025-11-22 07:38:08] -rw-r--r--. 2 boincer umatlas 412552057 Nov 21 11:19 EVNT.47493127._000754.pool.root.1
[2025-11-22 07:38:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 11:19 shared
[2025-11-22 07:38:08] -rw-r--r--. 2 boincer umatlas    590092 Nov 21 11:19 input.tar.gz
[2025-11-22 07:38:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:19 start_atlas.sh
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas         0 Nov 21 11:19 boinc_lockfile
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 11:19 pandaJob.out
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas        57 Nov 21 11:19 setup.sh.local
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas    989798 Nov 21 11:19 agis_schedconf.cvmfs.json
[2025-11-22 07:38:08] drwx------. 5 boincer umatlas      4096 Nov 21 11:19 pilot3
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas       533 Nov 22 06:50 boinc_task_state.xml
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas      6879 Nov 22 07:30 init_data.xml
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas 920503416 Nov 22 07:35 HITS.47523449._007532.pool.root.1
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas      1059 Nov 22 07:36 memory_monitor_summary.json
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas   1526164 Nov 22 07:36 agis_ddmendpoints.agis.ALL.json
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas   2659326 Nov 22 07:36 log.47523449._007532.job.log.tgz.1
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas      8624 Nov 22 07:37 heartbeat.json
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas        95 Nov 22 07:38 pilot_heartbeat.json
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas      5010 Nov 22 07:38 pilotlog.txt
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas   8326599 Nov 22 07:38 log.47523449._007532.job.log.1
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas       353 Nov 22 07:38 output.list
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas       620 Nov 22 07:38 runtime_log
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas  11008000 Nov 22 07:38 result.tar.gz
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 07:38 boinc_mmap_file
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas        29 Nov 22 07:38 wrapper_checkpoint.txt
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas      9350 Nov 22 07:38 runtime_log.err
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas       661 Nov 22 07:38 hsCNDmq8Mg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOLIKDmuShi8n.diag
[2025-11-22 07:38:08] -rw-r--r--. 1 boincer umatlas     21768 Nov 22 07:38 stderr.txt
[2025-11-22 07:38:08] HITS file was successfully produced:
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas 920503416 Nov 22 07:35 shared/HITS.pool.root.1
[2025-11-22 07:38:08]  *** Contents of shared directory: ***
[2025-11-22 07:38:08] total 1313172
[2025-11-22 07:38:08] -rw-r--r--. 2 boincer umatlas 412552057 Nov 21 11:19 ATLAS.root_0
[2025-11-22 07:38:08] -rw-r--r--. 2 boincer umatlas    590092 Nov 21 11:19 input.tar.gz
[2025-11-22 07:38:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:19 start_atlas.sh
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas 920503416 Nov 22 07:35 HITS.pool.root.1
[2025-11-22 07:38:08] -rw-------. 1 boincer umatlas  11008000 Nov 22 07:38 result.tar.gz
07:38:09 (4047763): run_atlas exited; CPU time 266171.501442
07:38:09 (4047763): called boinc_finish(0)

</stderr_txt>
]]>

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