Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:22:24 (2459553): wrapper (7.7.26015): starting
08:22:24 (2459553): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 08:22:24] Arguments: --nthreads 8
[2025-11-21 08:22:24] Threads: 8
[2025-11-21 08:22:24] Checking for CVMFS
[2025-11-21 08:22:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 08:22:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 08:22:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 08:22:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 08:22:25] 2.13.2.0 4057 25755 173364 153129 0 67 27757665 39288832 3280 16776704 0 15296205 99.582 13173979 34697 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 08:22:25] CVMFS is ok
[2025-11-21 08:22:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 08:22:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 08:22:25] Further information can be found at the LHC@home message board.
[2025-11-21 08:22:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 08:22:25] Checking for apptainer binary...
[2025-11-21 08:22:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 08:22:25] Running /usr/bin/apptainer --version
[2025-11-21 08:22:25] apptainer version 1.4.4-1.el9
[2025-11-21 08:22:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 08:22:25] c-210-24.aglt2.org
[2025-11-21 08:22:25] apptainer works
[2025-11-21 08:22:25] Set ATHENA_PROC_NUMBER=8
[2025-11-21 08:22:25] Set ATHENA_CORE_NUMBER=8
[2025-11-21 08:22:25] Starting ATLAS job with PandaID=6894241956
[2025-11-21 08:22:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:24:51]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:24:51] 2025-11-22 05:24:07,375 | INFO     | time since job start (57690s) is within the limit (172800.0s)
[2025-11-22 00:24:51] 2025-11-22 05:24:08,944 | INFO     | monitor loop #3711: job 0:6894241956 is in state 'finished'
[2025-11-22 00:24:51] 2025-11-22 05:24:08,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:24:51] 2025-11-22 05:24:09,081 | INFO     | PID=2470155 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:24:51] 2025-11-22 05:24:09,081 | INFO     | .. there are 10 such processes running
[2025-11-22 00:24:51] 2025-11-22 05:24:10,084 | INFO     | time since job start (57693s) is within the limit (172800.0s)
[2025-11-22 00:24:51] 2025-11-22 05:24:11,451 | INFO     | monitor loop #3712: job 0:6894241956 is in state 'finished'
[2025-11-22 00:24:51] 2025-11-22 05:24:11,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:24:51] 2025-11-22 05:24:12,092 | INFO     | time since job start (57695s) is within the limit (172800.0s)
[2025-11-22 00:24:51] 2025-11-22 05:24:13,959 | INFO     | monitor loop #3713: job 0:6894241956 is in state 'finished'
[2025-11-22 00:24:51] 2025-11-22 05:24:13,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:24:51] 2025-11-22 05:24:14,099 | INFO     | time since job start (57697s) is within the limit (172800.0s)
[2025-11-22 00:24:51] 2025-11-22 05:24:16,110 | INFO     | time since job start (57699s) is within the limit (172800.0s)
[2025-11-22 00:24:51] 2025-11-22 05:24:16,466 | INFO     | monitor loop #3714: job 0:6894241956 is in state 'finished'
[2025-11-22 00:24:51] 2025-11-22 05:24:16,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,421 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 00:24:51] 2025-11-22 05:24:17,432 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0523000000003
[2025-11-22 00:24:51] 2025-11-22 05:24:17,445 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894241956/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,446 | INFO     | extracted standard info from prmon json
[2025-11-22 00:24:51] 2025-11-22 05:24:17,446 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:24:51] 2025-11-22 05:24:17,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:24:51] 2025-11-22 05:24:17,484 | INFO     | fitting pss+swap vs Time
[2025-11-22 00:24:51] 2025-11-22 05:24:17,486 | INFO     | sum of square deviations: 261718870282.19177
[2025-11-22 00:24:51] 2025-11-22 05:24:17,541 | INFO     | sum of deviations: 589545156404.4268
[2025-11-22 00:24:51] 2025-11-22 05:24:17,541 | INFO     | mean x: 1763760180.4920635
[2025-11-22 00:24:51] 2025-11-22 05:24:17,541 | INFO     | mean y: 2941948.8571428573
[2025-11-22 00:24:51] 2025-11-22 05:24:17,542 | INFO     | intersect: -3970085560.954962
[2025-11-22 00:24:51] 2025-11-22 05:24:17,551 | INFO     | chi2: 15.171894369904678
[2025-11-22 00:24:51] 2025-11-22 05:24:17,553 | INFO     | sum of square deviations: 257588653104.6159
[2025-11-22 00:24:51] 2025-11-22 05:24:17,624 | INFO     | sum of deviations: 911624898263.3295
[2025-11-22 00:24:51] 2025-11-22 05:24:17,624 | INFO     | mean x: 1763760028.0202127
[2025-11-22 00:24:51] 2025-11-22 05:24:17,624 | INFO     | mean y: 2953836.35106383
[2025-11-22 00:24:51] 2025-11-22 05:24:17,624 | INFO     | intersect: -6239120636.750176
[2025-11-22 00:24:51] 2025-11-22 05:24:17,634 | INFO     | chi2: 11.866188843690976
[2025-11-22 00:24:51] 2025-11-22 05:24:17,634 | INFO     | current chi2=11.866188843690976 (change=21.788350522469862 %)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,634 | INFO     | right removable region: 939
[2025-11-22 00:24:51] 2025-11-22 05:24:17,636 | INFO     | sum of square deviations: 257585659539.65576
[2025-11-22 00:24:51] 2025-11-22 05:24:17,706 | INFO     | sum of deviations: 363200954919.2419
[2025-11-22 00:24:51] 2025-11-22 05:24:17,706 | INFO     | mean x: 1763760333.0191488
[2025-11-22 00:24:51] 2025-11-22 05:24:17,707 | INFO     | mean y: 2950287.653191489
[2025-11-22 00:24:51] 2025-11-22 05:24:17,707 | INFO     | intersect: -2483987216.344827
[2025-11-22 00:24:51] 2025-11-22 05:24:17,716 | INFO     | chi2: 13.418342083190474
[2025-11-22 00:24:51] 2025-11-22 05:24:17,717 | INFO     | current chi2=13.418342083190474 (change=11.557899389232439 %)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,717 | INFO     | left removable region: 10
[2025-11-22 00:24:51] 2025-11-22 05:24:17,718 | INFO     | sum of square deviations: 248649658251.78445
[2025-11-22 00:24:51] 2025-11-22 05:24:17,778 | INFO     | sum of deviations: 676967713477.6433
[2025-11-22 00:24:51] 2025-11-22 05:24:17,779 | INFO     | mean x: 1763760302.5834231
[2025-11-22 00:24:51] 2025-11-22 05:24:17,779 | INFO     | mean y: 2967189.2626480088
[2025-11-22 00:24:51] 2025-11-22 05:24:17,779 | INFO     | intersect: -4799005142.239511
[2025-11-22 00:24:51] 2025-11-22 05:24:17,786 | INFO     | chi2: 9.428215155358593
[2025-11-22 00:24:51] 2025-11-22 05:24:17,787 | INFO     | current memory leak: 2.72 B/s (using 929 data points, chi2=9.43)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,788 | INFO     | could have reported an average CPU frequency of 2600 MHz (35 samples)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,789 | INFO     | ..............................
[2025-11-22 00:24:51] 2025-11-22 05:24:17,789 | INFO     | . Timing measurements:
[2025-11-22 00:24:51] 2025-11-22 05:24:17,790 | INFO     | . get job = 0 s
[2025-11-22 00:24:51] 2025-11-22 05:24:17,790 | INFO     | . initial setup = 2 s
[2025-11-22 00:24:51] 2025-11-22 05:24:17,790 | INFO     | . payload setup = 5 s
[2025-11-22 00:24:51] 2025-11-22 05:24:17,790 | INFO     | . stage-in = 0 s
[2025-11-22 00:24:51] 2025-11-22 05:24:17,790 | INFO     | . payload execution = 57630 s
[2025-11-22 00:24:51] 2025-11-22 05:24:17,790 | INFO     | . stage-out = 9 s
[2025-11-22 00:24:51] 2025-11-22 05:24:17,790 | INFO     | . log creation = 3 s
[2025-11-22 00:24:51] 2025-11-22 05:24:17,790 | INFO     | ..............................
[2025-11-22 00:24:51] 2025-11-22 05:24:17,916 | INFO     | 
[2025-11-22 00:24:51] 2025-11-22 05:24:17,916 | INFO     | job summary report
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | --------------------------------------------------
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | PanDA job id: 6894241956
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | task id: 47533967
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | errors: (none)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | pilot state: finished 
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | transexitcode: 0
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | exeerrorcode: 0
[2025-11-22 00:24:51] 2025-11-22 05:24:17,917 | INFO     | exeerrordiag: 
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | exitcode: 0
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | exitmsg: OK
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | cpuconsumptiontime: 288067 s
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | nevents: 1000
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | neventsw: 0
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | pid: 2479256
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | pgrp: 2479256
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | corecount: 8
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | event service: False
[2025-11-22 00:24:51] 2025-11-22 05:24:17,918 | INFO     | sizes: {0: 2298691, 1: 2298833, 5: 2299095, 11: 2299151, 57640: 2351065, 57641: 2351064, 57651: 2360242, 57652: 2360298, 57686: 2360544}
[2025-11-22 00:24:51] 2025-11-22 05:24:17,919 | INFO     | --------------------------------------------------
[2025-11-22 00:24:51] 2025-11-22 05:24:17,919 | INFO     | 
[2025-11-22 00:24:51] 2025-11-22 05:24:17,920 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 00:24:51] 2025-11-22 05:24:17,988 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,989 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,989 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,989 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,989 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,989 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,989 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,990 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,990 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,990 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,990 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,990 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,990 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,991 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,991 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,991 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,991 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,991 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 00:24:51] 2025-11-22 05:24:17,991 | INFO     | job 6894241956 has completed (purged errors)
[2025-11-22 00:24:51] 2025-11-22 05:24:17,992 | INFO     | overall cleanup function is called
[2025-11-22 00:24:51] 2025-11-22 05:24:19,021 | INFO     | --- collectZombieJob: --- 10, [2479256]
[2025-11-22 00:24:51] 2025-11-22 05:24:19,021 | INFO     | zombie collector waiting for pid 2479256
[2025-11-22 00:24:51] 2025-11-22 05:24:19,022 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 00:24:51] 2025-11-22 05:24:19,022 | INFO     | collected zombie processes
[2025-11-22 00:24:51] 2025-11-22 05:24:19,022 | INFO     | will attempt to kill all subprocesses of pid=2479256
[2025-11-22 00:24:51] 2025-11-22 05:24:20,112 | INFO     | process IDs to be killed: [2479256] (in reverse order)
[2025-11-22 00:24:51] 2025-11-22 05:24:20,372 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 00:24:51] 2025-11-22 05:24:20,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 00:24:51] 2025-11-22 05:24:20,382 | INFO     | did not find any defunct processes belonging to 2479256
[2025-11-22 00:24:51] 2025-11-22 05:24:20,391 | INFO     | did not find any defunct processes belonging to 2479256
[2025-11-22 00:24:51] 2025-11-22 05:24:20,396 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 00:24:51] 2025-11-22 05:24:20,397 | INFO     | ready for new job
[2025-11-22 00:24:51] 2025-11-22 05:24:20,397 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 00:24:51] 2025-11-22 05:24:20,406 | INFO     | ***************************************
[2025-11-22 00:24:51] 2025-11-22 05:24:20,406 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 00:24:51] 2025-11-22 05:24:20,406 | INFO     | ***************************************
[2025-11-22 00:24:51] 2025-11-22 05:24:20,406 | INFO     | 
[2025-11-22 00:24:51] 2025-11-22 05:24:20,409 | INFO     | architecture information:
[2025-11-22 00:24:51] 2025-11-22 05:24:20,413 | INFO     | executing command: cat /etc/os-release
[2025-11-22 00:24:51] 2025-11-22 05:24:20,463 | INFO     | cat /etc/os-release:
[2025-11-22 00:24:51] NAME="CentOS Linux"
[2025-11-22 00:24:51] VERSION="7 (Core)"
[2025-11-22 00:24:51] ID="centos"
[2025-11-22 00:24:51] ID_LIKE="rhel fedora"
[2025-11-22 00:24:51] VERSION_ID="7"
[2025-11-22 00:24:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 00:24:51] ANSI_COLOR="0;31"
[2025-11-22 00:24:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 00:24:51] HOME_URL="https://www.centos.org/"
[2025-11-22 00:24:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 00:24:51] 
[2025-11-22 00:24:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 00:24:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 00:24:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 00:24:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:24:51] 
[2025-11-22 00:24:51] 2025-11-22 05:24:20,464 | INFO     | ***************************************
[2025-11-22 00:24:51] 2025-11-22 05:24:20,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 00:24:51] 2025-11-22 05:24:21,038 | INFO     | sufficient remaining disk space (47373615104 B)
[2025-11-22 00:24:51] 2025-11-22 05:24:21,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:24:51] 2025-11-22 05:24:21,040 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:24:51] 2025-11-22 05:24:21,040 | INFO     | update_server=False
[2025-11-22 00:24:51] 2025-11-22 05:24:21,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:24:51] 2025-11-22 05:24:21,450 | INFO     | all data control threads have been joined
[2025-11-22 00:24:51] 2025-11-22 05:24:21,515 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 00:24:51] 2025-11-22 05:24:21,515 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 00:24:51] 2025-11-22 05:24:21,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:24:51] 2025-11-22 05:24:21,516 | INFO     | will abort loop
[2025-11-22 00:24:51] 2025-11-22 05:24:21,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:24:51] 2025-11-22 05:24:21,736 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:24:51] 2025-11-22 05:24:21,745 | INFO     | all payload control threads have been joined
[2025-11-22 00:24:51] 2025-11-22 05:24:21,963 | INFO     | all job control threads have been joined
[2025-11-22 00:24:51] 2025-11-22 05:24:22,046 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:22,186 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:24:51] 2025-11-22 05:24:22,456 | INFO     | [data] control thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:22,540 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:22,548 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:22,750 | INFO     | [payload] control thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:22,937 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:24:51] 2025-11-22 05:24:22,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:22,969 | INFO     | [job] control thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:23,131 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:23,525 | INFO     | [job] validate thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:23,526 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:23,526 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:23,527 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:23,547 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:23,772 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:23,990 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:26,214 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:24:51] 2025-11-22 05:24:27,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809489827648)>', '<ExcThread(monitor, started 139809129473792)>']
[2025-11-22 00:24:51] 2025-11-22 05:24:32,493 | INFO     | all workflow threads have been joined
[2025-11-22 00:24:51] 2025-11-22 05:24:32,493 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:24:51] 2025-11-22 05:24:32,494 | INFO     | traces error code: 0
[2025-11-22 00:24:51] 2025-11-22 05:24:32,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:24:51] 2025-11-22 05:24:50,046 | INFO     | PID=2470155 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:24:51] 2025-11-22 05:24:50,046 | INFO     | .. there are 10 such processes running
[2025-11-22 00:24:51] 2025-11-22 05:24:50,047 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:24:51] 2025-11-22 05:24:50,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:24:51] 2025-11-22 05:24:50,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:24:51] 2025-11-22 05:24:50,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:24:51] 2025-11-22 05:24:50,047 | INFO     | [monitor] control thread has ended
[2025-11-22 00:24:51] 2025-11-22 05:24:50,342 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:24:51] 2025-11-22 05:24:50,358 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:24:51] 2025-11-22 05:24:50,371 [wrapper] pilotpid: 2470155
[2025-11-22 00:24:51] 2025-11-22 05:24:50,395 [wrapper] Pilot exit status: 0
[2025-11-22 00:24:51] 2025-11-22 05:24:50,510 [wrapper] pandaids: 6894241956
[2025-11-22 00:24:51] 2025-11-22 05:24:50,806 [wrapper] cleanup supervisor_pilot 3899991 2470159
[2025-11-22 00:24:51] 2025-11-22 05:24:50,848 [wrapper] Test setup, not cleaning
[2025-11-22 00:24:51] 2025-11-22 05:24:50,874 [wrapper] apfmon messages muted
[2025-11-22 00:24:51] 2025-11-22 05:24:50,904 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:24:51] 2025-11-22 05:24:50,918 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:24:51]  *** Error codes and diagnostics ***
[2025-11-22 00:24:51]     "exeErrorCode": 0,
[2025-11-22 00:24:51]     "exeErrorDiag": "",
[2025-11-22 00:24:51]     "pilotErrorCode": 0,
[2025-11-22 00:24:51]     "pilotErrorDiag": "",
[2025-11-22 00:24:51]  *** Listing of results directory ***
[2025-11-22 00:24:51] total 1309956
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 19:06 pilot3.tar.gz
[2025-11-22 00:24:51] -rwx------. 1 boincer umatlas     36292 Nov 20 19:49 runpilot2-wrapper.sh
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 19:49 queuedata.json
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas       100 Nov 21 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:24:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 08:22 run_atlas
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas       105 Nov 21 08:22 job.xml
[2025-11-22 00:24:51] -rw-r--r--. 2 boincer umatlas 411017488 Nov 21 08:22 EVNT.47493127._002061.pool.root.1
[2025-11-22 00:24:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 08:22 start_atlas.sh
[2025-11-22 00:24:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 08:22 shared
[2025-11-22 00:24:51] -rw-r--r--. 2 boincer umatlas    590104 Nov 21 08:22 input.tar.gz
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas         0 Nov 21 08:22 boinc_lockfile
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 08:22 pandaJob.out
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas        57 Nov 21 08:22 setup.sh.local
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas    989817 Nov 21 08:22 agis_schedconf.cvmfs.json
[2025-11-22 00:24:51] drwx------. 5 boincer umatlas      4096 Nov 21 08:22 pilot3
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas       533 Nov 21 23:58 boinc_task_state.xml
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas      6658 Nov 22 00:19 init_data.xml
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas 907089553 Nov 22 00:22 HITS.47533967._000329.pool.root.1
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas      1056 Nov 22 00:23 memory_monitor_summary.json
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas   1526164 Nov 22 00:23 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas   2105904 Nov 22 00:23 log.47533967._000329.job.log.tgz.1
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas        95 Nov 22 00:24 pilot_heartbeat.json
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas      8614 Nov 22 00:24 heartbeat.json
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 00:24 boinc_mmap_file
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas        29 Nov 22 00:24 wrapper_checkpoint.txt
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas       823 Nov 22 00:24 pilotlog.txt
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas   7574313 Nov 22 00:24 log.47533967._000329.job.log.1
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas       353 Nov 22 00:24 output.list
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas       620 Nov 22 00:24 runtime_log
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas   9697280 Nov 22 00:24 result.tar.gz
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas       660 Nov 22 00:24 SkALDmYWUg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTDHKDmQ5sbPo.diag
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 00:24 runtime_log.err
[2025-11-22 00:24:51] -rw-r--r--. 1 boincer umatlas     21836 Nov 22 00:24 stderr.txt
[2025-11-22 00:24:51] HITS file was successfully produced:
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas 907089553 Nov 22 00:22 shared/HITS.pool.root.1
[2025-11-22 00:24:51]  *** Contents of shared directory: ***
[2025-11-22 00:24:51] total 1297296
[2025-11-22 00:24:51] -rw-r--r--. 2 boincer umatlas 411017488 Nov 21 08:22 ATLAS.root_0
[2025-11-22 00:24:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 08:22 start_atlas.sh
[2025-11-22 00:24:51] -rw-r--r--. 2 boincer umatlas    590104 Nov 21 08:22 input.tar.gz
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas 907089553 Nov 22 00:22 HITS.pool.root.1
[2025-11-22 00:24:51] -rw-------. 1 boincer umatlas   9697280 Nov 22 00:24 result.tar.gz
00:24:53 (2459553): run_atlas exited; CPU time 288460.026916
00:24:53 (2459553): called boinc_finish(0)

</stderr_txt>
]]>

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