Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:18:31 (4052050): wrapper (7.7.26015): starting
08:18:31 (4052050): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 08:18:31] Arguments: --nthreads 8
[2025-11-21 08:18:31] Threads: 8
[2025-11-21 08:18:31] Checking for CVMFS
[2025-11-21 08:18:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 08:18:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 08:18:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 08:18:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 08:18:32] 2.13.2.0 5664 26624 195812 153129 2 57 37084560 39288833 4152 16776704 0 17643527 99.627 12650228 27636 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 08:18:32] CVMFS is ok
[2025-11-21 08:18:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 08:18:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 08:18:32] Further information can be found at the LHC@home message board.
[2025-11-21 08:18:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 08:18:32] Checking for apptainer binary...
[2025-11-21 08:18:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 08:18:32] Running /usr/bin/apptainer --version
[2025-11-21 08:18:32] apptainer version 1.4.4-1.el9
[2025-11-21 08:18:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 08:18:32] c-210-30.aglt2.org
[2025-11-21 08:18:32] apptainer works
[2025-11-21 08:18:32] Set ATHENA_PROC_NUMBER=8
[2025-11-21 08:18:32] Set ATHENA_CORE_NUMBER=8
[2025-11-21 08:18:32] Starting ATLAS job with PandaID=6894242393
[2025-11-21 08:18:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 03:43:03]  *** The last 200 lines of the pilot log: ***
[2025-11-22 03:43:03] 2025-11-22 08:42:06,534 | INFO     | monitor loop #4537: job 0:6894242393 is in state 'finished'
[2025-11-22 03:43:03] 2025-11-22 08:42:06,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:43:03] 2025-11-22 08:42:06,899 | INFO     | time since job start (69793s) is within the limit (172800.0s)
[2025-11-22 03:43:03] 2025-11-22 08:42:08,907 | INFO     | time since job start (69795s) is within the limit (172800.0s)
[2025-11-22 03:43:03] 2025-11-22 08:42:09,041 | INFO     | monitor loop #4538: job 0:6894242393 is in state 'finished'
[2025-11-22 03:43:03] 2025-11-22 08:42:09,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:43:03] 2025-11-22 08:42:10,913 | INFO     | time since job start (69797s) is within the limit (172800.0s)
[2025-11-22 03:43:03] 2025-11-22 08:42:11,556 | INFO     | monitor loop #4539: job 0:6894242393 is in state 'finished'
[2025-11-22 03:43:03] 2025-11-22 08:42:11,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:43:03] 2025-11-22 08:42:12,617 | INFO     | PID=4055783 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 03:43:03] 2025-11-22 08:42:12,629 | INFO     | .. there are 9 such processes running
[2025-11-22 03:43:03] 2025-11-22 08:42:13,635 | INFO     | time since job start (69800s) is within the limit (172800.0s)
[2025-11-22 03:43:03] 2025-11-22 08:42:14,068 | INFO     | monitor loop #4540: job 0:6894242393 is in state 'finished'
[2025-11-22 03:43:03] 2025-11-22 08:42:14,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:43:03] 2025-11-22 08:42:15,642 | INFO     | time since job start (69802s) is within the limit (172800.0s)
[2025-11-22 03:43:03] 2025-11-22 08:42:16,265 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 03:43:03] 2025-11-22 08:42:16,287 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.852225
[2025-11-22 03:43:03] 2025-11-22 08:42:16,310 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894242393/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 03:43:03] 2025-11-22 08:42:16,319 | INFO     | extracted standard info from prmon json
[2025-11-22 03:43:03] 2025-11-22 08:42:16,320 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 03:43:03] 2025-11-22 08:42:16,320 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 03:43:03] 2025-11-22 08:42:16,443 | INFO     | fitting pss+swap vs Time
[2025-11-22 03:43:03] 2025-11-22 08:42:16,445 | INFO     | sum of square deviations: 463033959402.88226
[2025-11-22 03:43:03] 2025-11-22 08:42:16,513 | INFO     | sum of deviations: 1369329708790.1155
[2025-11-22 03:43:03] 2025-11-22 08:42:16,513 | INFO     | mean x: 1763766007.1942258
[2025-11-22 03:43:03] 2025-11-22 08:42:16,513 | INFO     | mean y: 2935682.774278215
[2025-11-22 03:43:03] 2025-11-22 08:42:16,513 | INFO     | intersect: -5213047171.096158
[2025-11-22 03:43:03] 2025-11-22 08:42:16,519 | INFO     | chi2: 13.20659066049623
[2025-11-22 03:43:03] 2025-11-22 08:42:16,521 | INFO     | sum of square deviations: 456984578371.61554
[2025-11-22 03:43:03] 2025-11-22 08:42:16,583 | INFO     | monitor loop #4541: job 0:6894242393 is in state 'finished'
[2025-11-22 03:43:03] 2025-11-22 08:42:16,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:43:03] 2025-11-22 08:42:16,596 | INFO     | sum of deviations: 1748164518382.0022
[2025-11-22 03:43:03] 2025-11-22 08:42:16,596 | INFO     | mean x: 1763765854.7029877
[2025-11-22 03:43:03] 2025-11-22 08:42:16,596 | INFO     | mean y: 2945230.4112478034
[2025-11-22 03:43:03] 2025-11-22 08:42:16,596 | INFO     | intersect: -6744225312.8759165
[2025-11-22 03:43:03] 2025-11-22 08:42:16,598 | INFO     | chi2: 10.147166196130296
[2025-11-22 03:43:03] 2025-11-22 08:42:16,598 | INFO     | current chi2=10.147166196130296 (change=23.165891508376454 %)
[2025-11-22 03:43:03] 2025-11-22 08:42:16,598 | INFO     | right removable region: 1137
[2025-11-22 03:43:03] 2025-11-22 08:42:16,603 | INFO     | sum of square deviations: 456983118211.2032
[2025-11-22 03:43:03] 2025-11-22 08:42:16,677 | INFO     | sum of deviations: 1001226655443.0148
[2025-11-22 03:43:03] 2025-11-22 08:42:16,728 | INFO     | mean x: 1763766159.7038665
[2025-11-22 03:43:03] 2025-11-22 08:42:16,729 | INFO     | mean y: 2944954.905096661
[2025-11-22 03:43:03] 2025-11-22 08:42:16,729 | INFO     | intersect: -3861376554.336554
[2025-11-22 03:43:03] 2025-11-22 08:42:16,731 | INFO     | chi2: 10.585384110792864
[2025-11-22 03:43:03] 2025-11-22 08:42:16,732 | INFO     | current chi2=10.585384110792864 (change=19.847715561776 %)
[2025-11-22 03:43:03] 2025-11-22 08:42:16,732 | INFO     | left removable region: 10
[2025-11-22 03:43:03] 2025-11-22 08:42:16,733 | INFO     | sum of square deviations: 443859162849.09894
[2025-11-22 03:43:03] 2025-11-22 08:42:16,830 | INFO     | sum of deviations: 1374485633087.243
[2025-11-22 03:43:03] 2025-11-22 08:42:16,830 | INFO     | mean x: 1763766129.2227151
[2025-11-22 03:43:03] 2025-11-22 08:42:16,830 | INFO     | mean y: 2958390.763975155
[2025-11-22 03:43:03] 2025-11-22 08:42:16,831 | INFO     | intersect: -5458844378.342566
[2025-11-22 03:43:03] 2025-11-22 08:42:16,881 | INFO     | chi2: 6.907337412422521
[2025-11-22 03:43:03] 2025-11-22 08:42:16,882 | INFO     | current memory leak: 3.10 B/s (using 1127 data points, chi2=6.91)
[2025-11-22 03:43:03] 2025-11-22 08:42:16,883 | INFO     | could have reported an average CPU frequency of 2599 MHz (42 samples)
[2025-11-22 03:43:03] 2025-11-22 08:42:16,883 | INFO     | ..............................
[2025-11-22 03:43:03] 2025-11-22 08:42:16,883 | INFO     | . Timing measurements:
[2025-11-22 03:43:03] 2025-11-22 08:42:16,883 | INFO     | . get job = 0 s
[2025-11-22 03:43:03] 2025-11-22 08:42:16,883 | INFO     | . initial setup = 3 s
[2025-11-22 03:43:03] 2025-11-22 08:42:16,884 | INFO     | . payload setup = 11 s
[2025-11-22 03:43:03] 2025-11-22 08:42:16,884 | INFO     | . stage-in = 0 s
[2025-11-22 03:43:03] 2025-11-22 08:42:16,884 | INFO     | . payload execution = 69722 s
[2025-11-22 03:43:03] 2025-11-22 08:42:16,884 | INFO     | . stage-out = 8 s
[2025-11-22 03:43:03] 2025-11-22 08:42:16,884 | INFO     | . log creation = 1 s
[2025-11-22 03:43:03] 2025-11-22 08:42:16,884 | INFO     | ..............................
[2025-11-22 03:43:03] 2025-11-22 08:42:17,090 | INFO     | 
[2025-11-22 03:43:03] 2025-11-22 08:42:17,090 | INFO     | job summary report
[2025-11-22 03:43:03] 2025-11-22 08:42:17,090 | INFO     | --------------------------------------------------
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | PanDA job id: 6894242393
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | task id: 47533967
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | errors: (none)
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | pilot state: finished 
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | transexitcode: 0
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | exeerrorcode: 0
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | exeerrordiag: 
[2025-11-22 03:43:03] 2025-11-22 08:42:17,091 | INFO     | exitcode: 0
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | exitmsg: OK
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | cpuconsumptiontime: 306681 s
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | nevents: 1000
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | neventsw: 0
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | pid: 4062152
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | pgrp: 4062152
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | corecount: 8
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | event service: False
[2025-11-22 03:43:03] 2025-11-22 08:42:17,092 | INFO     | sizes: {0: 2298633, 1: 2298832, 9: 2299094, 12: 2299122, 69738: 2357283, 69748: 2366461, 69784: 2366651}
[2025-11-22 03:43:03] 2025-11-22 08:42:17,093 | INFO     | --------------------------------------------------
[2025-11-22 03:43:03] 2025-11-22 08:42:17,093 | INFO     | 
[2025-11-22 03:43:03] 2025-11-22 08:42:17,093 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 03:43:03] 2025-11-22 08:42:17,150 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,150 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,150 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,150 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,152 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,152 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,152 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,152 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,152 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 03:43:03] 2025-11-22 08:42:17,152 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,152 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 03:43:03] 2025-11-22 08:42:17,153 | INFO     | job 6894242393 has completed (purged errors)
[2025-11-22 03:43:03] 2025-11-22 08:42:17,153 | INFO     | overall cleanup function is called
[2025-11-22 03:43:03] 2025-11-22 08:42:18,184 | INFO     | --- collectZombieJob: --- 10, [4062152]
[2025-11-22 03:43:03] 2025-11-22 08:42:18,185 | INFO     | zombie collector waiting for pid 4062152
[2025-11-22 03:43:03] 2025-11-22 08:42:18,185 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 03:43:03] 2025-11-22 08:42:18,185 | INFO     | collected zombie processes
[2025-11-22 03:43:03] 2025-11-22 08:42:18,185 | INFO     | will attempt to kill all subprocesses of pid=4062152
[2025-11-22 03:43:03] 2025-11-22 08:42:18,917 | INFO     | process IDs to be killed: [4062152] (in reverse order)
[2025-11-22 03:43:03] 2025-11-22 08:42:19,085 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 03:43:03] 2025-11-22 08:42:19,085 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 03:43:03] 2025-11-22 08:42:19,103 | INFO     | did not find any defunct processes belonging to 4062152
[2025-11-22 03:43:03] 2025-11-22 08:42:19,119 | INFO     | did not find any defunct processes belonging to 4062152
[2025-11-22 03:43:03] 2025-11-22 08:42:19,120 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 03:43:03] 2025-11-22 08:42:19,121 | INFO     | ready for new job
[2025-11-22 03:43:03] 2025-11-22 08:42:19,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 03:43:03] 2025-11-22 08:42:19,130 | INFO     | ***************************************
[2025-11-22 03:43:03] 2025-11-22 08:42:19,130 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 03:43:03] 2025-11-22 08:42:19,130 | INFO     | ***************************************
[2025-11-22 03:43:03] 2025-11-22 08:42:19,131 | INFO     | 
[2025-11-22 03:43:03] 2025-11-22 08:42:19,137 | INFO     | architecture information:
[2025-11-22 03:43:03] 2025-11-22 08:42:19,137 | INFO     | executing command: cat /etc/os-release
[2025-11-22 03:43:03] 2025-11-22 08:42:19,249 | INFO     | cat /etc/os-release:
[2025-11-22 03:43:03] NAME="CentOS Linux"
[2025-11-22 03:43:03] VERSION="7 (Core)"
[2025-11-22 03:43:03] ID="centos"
[2025-11-22 03:43:03] ID_LIKE="rhel fedora"
[2025-11-22 03:43:03] VERSION_ID="7"
[2025-11-22 03:43:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 03:43:03] ANSI_COLOR="0;31"
[2025-11-22 03:43:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 03:43:03] HOME_URL="https://www.centos.org/"
[2025-11-22 03:43:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 03:43:03] 
[2025-11-22 03:43:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 03:43:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 03:43:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 03:43:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 03:43:03] 
[2025-11-22 03:43:03] 2025-11-22 08:42:19,250 | INFO     | ***************************************
[2025-11-22 03:43:03] 2025-11-22 08:42:19,754 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 03:43:03] 2025-11-22 08:42:20,022 | INFO     | sufficient remaining disk space (49018830848 B)
[2025-11-22 03:43:03] 2025-11-22 08:42:20,022 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 03:43:03] 2025-11-22 08:42:20,023 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 03:43:03] 2025-11-22 08:42:20,023 | INFO     | update_server=False
[2025-11-22 03:43:03] 2025-11-22 08:42:20,023 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 03:43:03] 2025-11-22 08:42:20,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 03:43:03] 2025-11-22 08:42:20,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 03:43:03] 2025-11-22 08:42:20,095 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 03:43:03] 2025-11-22 08:42:20,096 | INFO     | aborting loop
[2025-11-22 03:43:03] 2025-11-22 08:42:20,365 | INFO     | all job control threads have been joined
[2025-11-22 03:43:03] 2025-11-22 08:42:20,447 | INFO     | all data control threads have been joined
[2025-11-22 03:43:03] 2025-11-22 08:42:21,028 | INFO     | [job] retrieve thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,105 | INFO     | [job] job monitor thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,157 | INFO     | all payload control threads have been joined
[2025-11-22 03:43:03] 2025-11-22 08:42:21,294 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,295 | INFO     | [data] copytool_in thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,372 | INFO     | [job] control thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,453 | INFO     | [data] control thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,519 | INFO     | [payload] failed_post thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,562 | INFO     | [job] validate thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:21,784 | INFO     | [payload] validate_post thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:22,031 | INFO     | [data] copytool_out thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:22,032 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:22,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 03:43:03] 2025-11-22 08:42:22,167 | INFO     | [payload] control thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:22,506 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:23,114 | INFO     | [job] queue monitor thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:24,039 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 03:43:03] 2025-11-22 08:42:49,491 | INFO     | PID=4055783 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 03:43:03] 2025-11-22 08:42:49,491 | INFO     | .. there are 9 such processes running
[2025-11-22 03:43:03] 2025-11-22 08:42:49,491 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 03:43:03] 2025-11-22 08:42:49,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 03:43:03] 2025-11-22 08:42:49,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 03:43:03] 2025-11-22 08:42:56,177 | INFO     | [monitor] cgroup control has ended
[2025-11-22 03:43:03] 2025-11-22 08:42:56,805 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140244717647680)>', '<ExcThread(monitor, started 140244087199488)>']
[2025-11-22 03:43:03] 2025-11-22 08:42:57,545 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 03:43:03] 2025-11-22 08:42:57,546 | INFO     | [monitor] control thread has ended
[2025-11-22 03:43:03] 2025-11-22 08:43:01,831 | INFO     | all workflow threads have been joined
[2025-11-22 03:43:03] 2025-11-22 08:43:01,831 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 03:43:03] 2025-11-22 08:43:01,832 | INFO     | traces error code: 0
[2025-11-22 03:43:03] 2025-11-22 08:43:01,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 03:43:03] 2025-11-22 08:43:02,247 [wrapper] ==== pilot stdout END ====
[2025-11-22 03:43:03] 2025-11-22 08:43:02,263 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 03:43:03] 2025-11-22 08:43:02,273 [wrapper] pilotpid: 4055783
[2025-11-22 03:43:03] 2025-11-22 08:43:02,277 [wrapper] Pilot exit status: 0
[2025-11-22 03:43:03] 2025-11-22 08:43:02,449 [wrapper] pandaids: 6894242393
[2025-11-22 03:43:03] 2025-11-22 08:43:02,592 [wrapper] cleanup supervisor_pilot 1569490 4055784
[2025-11-22 03:43:03] 2025-11-22 08:43:02,606 [wrapper] Test setup, not cleaning
[2025-11-22 03:43:03] 2025-11-22 08:43:02,630 [wrapper] apfmon messages muted
[2025-11-22 03:43:03] 2025-11-22 08:43:02,652 [wrapper] ==== wrapper stdout END ====
[2025-11-22 03:43:03] 2025-11-22 08:43:02,675 [wrapper] ==== wrapper stderr END ====
[2025-11-22 03:43:03]  *** Error codes and diagnostics ***
[2025-11-22 03:43:03]     "exeErrorCode": 0,
[2025-11-22 03:43:03]     "exeErrorDiag": "",
[2025-11-22 03:43:03]     "pilotErrorCode": 0,
[2025-11-22 03:43:03]     "pilotErrorDiag": "",
[2025-11-22 03:43:03]  *** Listing of results directory ***
[2025-11-22 03:43:03] total 1321844
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 19:06 pilot3.tar.gz
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 19:53 queuedata.json
[2025-11-22 03:43:03] -rwx------. 1 boincer umatlas     36292 Nov 20 19:53 runpilot2-wrapper.sh
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas       100 Nov 21 08:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 03:43:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 08:18 run_atlas
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas       105 Nov 21 08:18 job.xml
[2025-11-22 03:43:03] -rw-r--r--. 2 boincer umatlas 407169420 Nov 21 08:18 EVNT.47493127._002066.pool.root.1
[2025-11-22 03:43:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 08:18 start_atlas.sh
[2025-11-22 03:43:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 08:18 shared
[2025-11-22 03:43:03] -rw-r--r--. 2 boincer umatlas    590108 Nov 21 08:18 input.tar.gz
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas         0 Nov 21 08:18 boinc_lockfile
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 08:18 pandaJob.out
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas        57 Nov 21 08:18 setup.sh.local
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas    989817 Nov 21 08:18 agis_schedconf.cvmfs.json
[2025-11-22 03:43:03] drwx------. 5 boincer umatlas      4096 Nov 21 08:18 pilot3
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas       533 Nov 22 03:09 boinc_task_state.xml
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas      6661 Nov 22 03:36 init_data.xml
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas 919474169 Nov 22 03:39 HITS.47533967._000373.pool.root.1
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas      1057 Nov 22 03:41 memory_monitor_summary.json
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas   1526164 Nov 22 03:41 agis_ddmendpoints.agis.ALL.json
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas   2270166 Nov 22 03:41 log.47533967._000373.job.log.tgz.1
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas        95 Nov 22 03:41 pilot_heartbeat.json
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas      8632 Nov 22 03:42 heartbeat.json
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas      4823 Nov 22 03:43 pilotlog.txt
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 03:43 boinc_mmap_file
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas   9227662 Nov 22 03:43 log.47533967._000373.job.log.1
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas        29 Nov 22 03:43 wrapper_checkpoint.txt
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas       353 Nov 22 03:43 output.list
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas       620 Nov 22 03:43 runtime_log
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas  11520000 Nov 22 03:43 result.tar.gz
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 03:43 runtime_log.err
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas       660 Nov 22 03:43 8OwMDmUaUg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5DHKDmRSshOm.diag
[2025-11-22 03:43:03] -rw-r--r--. 1 boincer umatlas     21826 Nov 22 03:43 stderr.txt
[2025-11-22 03:43:03] HITS file was successfully produced:
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas 919474169 Nov 22 03:39 shared/HITS.pool.root.1
[2025-11-22 03:43:03]  *** Contents of shared directory: ***
[2025-11-22 03:43:03] total 1307408
[2025-11-22 03:43:03] -rw-r--r--. 2 boincer umatlas 407169420 Nov 21 08:18 ATLAS.root_0
[2025-11-22 03:43:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 08:18 start_atlas.sh
[2025-11-22 03:43:03] -rw-r--r--. 2 boincer umatlas    590108 Nov 21 08:18 input.tar.gz
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas 919474169 Nov 22 03:39 HITS.pool.root.1
[2025-11-22 03:43:03] -rw-------. 1 boincer umatlas  11520000 Nov 22 03:43 result.tar.gz
03:43:04 (4052050): run_atlas exited; CPU time 307348.775342
03:43:04 (4052050): called boinc_finish(0)

</stderr_txt>
]]>

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