Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:47:51 (2975110): wrapper (7.7.26015): starting
07:47:51 (2975110): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 07:47:51] Arguments: --nthreads 8
[2025-11-21 07:47:51] Threads: 8
[2025-11-21 07:47:51] Checking for CVMFS
[2025-11-21 07:47:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:47:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:47:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:47:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:47:52] 2.13.2.0 7646 25730 150392 153128 3 81 37346795 39288833 3768 16776704 0 15643777 99.525 16012472 33260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 07:47:52] CVMFS is ok
[2025-11-21 07:47:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:47:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:47:52] Further information can be found at the LHC@home message board.
[2025-11-21 07:47:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:47:52] Checking for apptainer binary...
[2025-11-21 07:47:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:47:52] Running /usr/bin/apptainer --version
[2025-11-21 07:47:52] apptainer version 1.4.4-1.el9
[2025-11-21 07:47:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:47:52] c-210-2.aglt2.org
[2025-11-21 07:47:52] apptainer works
[2025-11-21 07:47:52] Set ATHENA_PROC_NUMBER=8
[2025-11-21 07:47:52] Set ATHENA_CORE_NUMBER=8
[2025-11-21 07:47:52] Starting ATLAS job with PandaID=6894241954
[2025-11-21 07:47:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:51:55]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:51:55] 2025-11-22 20:51:01,743 | INFO     | time since job start (115378s) is within the limit (172800.0s)
[2025-11-22 15:51:55] 2025-11-22 20:51:03,752 | INFO     | time since job start (115380s) is within the limit (172800.0s)
[2025-11-22 15:51:55] 2025-11-22 20:51:04,224 | INFO     | monitor loop #6674: job 0:6894241954 is in state 'finished'
[2025-11-22 15:51:55] 2025-11-22 20:51:04,225 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:51:55] 2025-11-22 20:51:05,803 | INFO     | time since job start (115382s) is within the limit (172800.0s)
[2025-11-22 15:51:55] 2025-11-22 20:51:06,730 | INFO     | monitor loop #6675: job 0:6894241954 is in state 'finished'
[2025-11-22 15:51:55] 2025-11-22 20:51:06,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:51:55] 2025-11-22 20:51:07,839 | INFO     | time since job start (115384s) is within the limit (172800.0s)
[2025-11-22 15:51:55] 2025-11-22 20:51:09,240 | INFO     | monitor loop #6676: job 0:6894241954 is in state 'finished'
[2025-11-22 15:51:55] 2025-11-22 20:51:09,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:51:55] 2025-11-22 20:51:09,846 | INFO     | time since job start (115386s) is within the limit (172800.0s)
[2025-11-22 15:51:55] 2025-11-22 20:51:11,745 | INFO     | monitor loop #6677: job 0:6894241954 is in state 'finished'
[2025-11-22 15:51:55] 2025-11-22 20:51:11,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:51:55] 2025-11-22 20:51:11,853 | INFO     | time since job start (115388s) is within the limit (172800.0s)
[2025-11-22 15:51:55] 2025-11-22 20:51:13,860 | INFO     | time since job start (115390s) is within the limit (172800.0s)
[2025-11-22 15:51:55] 2025-11-22 20:51:14,157 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 15:51:55] 2025-11-22 20:51:14,168 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.7645
[2025-11-22 15:51:55] 2025-11-22 20:51:14,183 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894241954/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:51:55] 2025-11-22 20:51:14,184 | INFO     | extracted standard info from prmon json
[2025-11-22 15:51:55] 2025-11-22 20:51:14,184 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:51:55] 2025-11-22 20:51:14,185 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:51:55] 2025-11-22 20:51:14,253 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:51:55] 2025-11-22 20:51:14,260 | INFO     | sum of square deviations: 2096893820518.3538
[2025-11-22 15:51:55] 2025-11-22 20:51:14,282 | INFO     | monitor loop #6678: job 0:6894241954 is in state 'finished'
[2025-11-22 15:51:55] 2025-11-22 20:51:14,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:51:55] 2025-11-22 20:51:14,425 | INFO     | sum of deviations: -4816744087707.879
[2025-11-22 15:51:55] 2025-11-22 20:51:14,425 | INFO     | mean x: 1763786958.8122687
[2025-11-22 15:51:55] 2025-11-22 20:51:14,425 | INFO     | mean y: 2967931.132734003
[2025-11-22 15:51:55] 2025-11-22 20:51:14,425 | INFO     | intersect: 4054537124.9105616
[2025-11-22 15:51:55] 2025-11-22 20:51:14,437 | INFO     | chi2: 49.68990886931317
[2025-11-22 15:51:55] 2025-11-22 20:51:14,439 | INFO     | sum of square deviations: 2080308796461.4978
[2025-11-22 15:51:55] 2025-11-22 20:51:14,564 | INFO     | sum of deviations: -4135084496086.0776
[2025-11-22 15:51:55] 2025-11-22 20:51:14,564 | INFO     | mean x: 1763786806.3276777
[2025-11-22 15:51:55] 2025-11-22 20:51:14,564 | INFO     | mean y: 2974197.7428419935
[2025-11-22 15:51:55] 2025-11-22 20:51:14,564 | INFO     | intersect: 3508899611.149007
[2025-11-22 15:51:55] 2025-11-22 20:51:14,566 | INFO     | chi2: 45.95587248371913
[2025-11-22 15:51:55] 2025-11-22 20:51:14,566 | INFO     | current chi2=45.95587248371913 (change=7.514677467843082 %)
[2025-11-22 15:51:55] 2025-11-22 20:51:14,567 | INFO     | right removable region: 1885
[2025-11-22 15:51:55] 2025-11-22 20:51:14,583 | INFO     | sum of square deviations: 2080302207191.1504
[2025-11-22 15:51:55] 2025-11-22 20:51:14,663 | INFO     | sum of deviations: -5263766491738.875
[2025-11-22 15:51:55] 2025-11-22 20:51:14,664 | INFO     | mean x: 1763787111.3271475
[2025-11-22 15:51:55] 2025-11-22 20:51:14,664 | INFO     | mean y: 2972036.610816543
[2025-11-22 15:51:55] 2025-11-22 20:51:14,664 | INFO     | intersect: 4465863756.415478
[2025-11-22 15:51:55] 2025-11-22 20:51:14,666 | INFO     | chi2: 47.92040324749698
[2025-11-22 15:51:55] 2025-11-22 20:51:14,666 | INFO     | current chi2=47.92040324749698 (change=3.561096532638202 %)
[2025-11-22 15:51:55] 2025-11-22 20:51:14,666 | INFO     | left removable region: 10
[2025-11-22 15:51:55] 2025-11-22 20:51:14,669 | INFO     | sum of square deviations: 2044117364348.829
[2025-11-22 15:51:55] 2025-11-22 20:51:14,748 | INFO     | sum of deviations: -4561565877493.363
[2025-11-22 15:51:55] 2025-11-22 20:51:14,748 | INFO     | mean x: 1763787080.8592
[2025-11-22 15:51:55] 2025-11-22 20:51:14,748 | INFO     | mean y: 2980526.241066667
[2025-11-22 15:51:55] 2025-11-22 20:51:14,748 | INFO     | intersect: 3938973196.492639
[2025-11-22 15:51:55] 2025-11-22 20:51:14,751 | INFO     | chi2: 43.434761664021686
[2025-11-22 15:51:55] 2025-11-22 20:51:14,751 | INFO     | current memory leak: -2.23 B/s (using 1875 data points, chi2=43.43)
[2025-11-22 15:51:55] 2025-11-22 20:51:14,752 | INFO     | could have reported an average CPU frequency of 2600 MHz (66 samples)
[2025-11-22 15:51:55] 2025-11-22 20:51:14,752 | INFO     | ..............................
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | . Timing measurements:
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | . get job = 0 s
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | . initial setup = 2 s
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | . payload setup = 5 s
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | . stage-in = 0 s
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | . payload execution = 115323 s
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | . stage-out = 10 s
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | . log creation = 4 s
[2025-11-22 15:51:55] 2025-11-22 20:51:14,753 | INFO     | ..............................
[2025-11-22 15:51:55] 2025-11-22 20:51:15,069 | INFO     | 
[2025-11-22 15:51:55] 2025-11-22 20:51:15,069 | INFO     | job summary report
[2025-11-22 15:51:55] 2025-11-22 20:51:15,069 | INFO     | --------------------------------------------------
[2025-11-22 15:51:55] 2025-11-22 20:51:15,069 | INFO     | PanDA job id: 6894241954
[2025-11-22 15:51:55] 2025-11-22 20:51:15,069 | INFO     | task id: 47533967
[2025-11-22 15:51:55] 2025-11-22 20:51:15,069 | INFO     | errors: (none)
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | pilot state: finished 
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | transexitcode: 0
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | exeerrorcode: 0
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | exeerrordiag: 
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | exitcode: 0
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | exitmsg: OK
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | cpuconsumptiontime: 296606 s
[2025-11-22 15:51:55] 2025-11-22 20:51:15,070 | INFO     | nevents: 1000
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | neventsw: 0
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | pid: 2985938
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | pgrp: 2985938
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | corecount: 8
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | event service: False
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | sizes: {0: 2298578, 1: 2298833, 5: 2299095, 12: 2299151, 115331: 2375816, 115332: 2375815, 115342: 2384993, 115343: 2385049, 115377: 2385295}
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | --------------------------------------------------
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | 
[2025-11-22 15:51:55] 2025-11-22 20:51:15,071 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 15:51:55] 2025-11-22 20:51:15,103 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,104 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,104 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,104 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,104 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,106 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,106 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,106 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:51:55] 2025-11-22 20:51:15,106 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,106 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:51:55] 2025-11-22 20:51:15,106 | INFO     | job 6894241954 has completed (purged errors)
[2025-11-22 15:51:55] 2025-11-22 20:51:15,106 | INFO     | overall cleanup function is called
[2025-11-22 15:51:55] 2025-11-22 20:51:16,218 | INFO     | --- collectZombieJob: --- 10, [2985938]
[2025-11-22 15:51:55] 2025-11-22 20:51:16,218 | INFO     | zombie collector waiting for pid 2985938
[2025-11-22 15:51:55] 2025-11-22 20:51:16,219 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:51:55] 2025-11-22 20:51:16,219 | INFO     | collected zombie processes
[2025-11-22 15:51:55] 2025-11-22 20:51:16,219 | INFO     | will attempt to kill all subprocesses of pid=2985938
[2025-11-22 15:51:55] 2025-11-22 20:51:16,860 | INFO     | process IDs to be killed: [2985938] (in reverse order)
[2025-11-22 15:51:55] 2025-11-22 20:51:17,025 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:51:55] 2025-11-22 20:51:17,025 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:51:55] 2025-11-22 20:51:17,042 | INFO     | did not find any defunct processes belonging to 2985938
[2025-11-22 15:51:55] 2025-11-22 20:51:17,058 | INFO     | did not find any defunct processes belonging to 2985938
[2025-11-22 15:51:55] 2025-11-22 20:51:17,063 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:51:55] 2025-11-22 20:51:17,063 | INFO     | ready for new job
[2025-11-22 15:51:55] 2025-11-22 20:51:17,064 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:51:55] 2025-11-22 20:51:17,080 | INFO     | ***************************************
[2025-11-22 15:51:55] 2025-11-22 20:51:17,080 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:51:55] 2025-11-22 20:51:17,080 | INFO     | ***************************************
[2025-11-22 15:51:55] 2025-11-22 20:51:17,080 | INFO     | 
[2025-11-22 15:51:55] 2025-11-22 20:51:17,082 | INFO     | architecture information:
[2025-11-22 15:51:55] 2025-11-22 20:51:17,083 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:51:55] 2025-11-22 20:51:17,138 | INFO     | cat /etc/os-release:
[2025-11-22 15:51:55] NAME="CentOS Linux"
[2025-11-22 15:51:55] VERSION="7 (Core)"
[2025-11-22 15:51:55] ID="centos"
[2025-11-22 15:51:55] ID_LIKE="rhel fedora"
[2025-11-22 15:51:55] VERSION_ID="7"
[2025-11-22 15:51:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:51:55] ANSI_COLOR="0;31"
[2025-11-22 15:51:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:51:55] HOME_URL="https://www.centos.org/"
[2025-11-22 15:51:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:51:55] 
[2025-11-22 15:51:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:51:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:51:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:51:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:51:55] 
[2025-11-22 15:51:55] 2025-11-22 20:51:17,139 | INFO     | ***************************************
[2025-11-22 15:51:55] 2025-11-22 20:51:17,643 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 15:51:55] 2025-11-22 20:51:17,713 | INFO     | sufficient remaining disk space (46739226624 B)
[2025-11-22 15:51:55] 2025-11-22 20:51:17,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:51:55] 2025-11-22 20:51:17,713 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:51:55] 2025-11-22 20:51:17,713 | INFO     | update_server=False
[2025-11-22 15:51:55] 2025-11-22 20:51:17,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:51:55] 2025-11-22 20:51:17,769 | INFO     | all data control threads have been joined
[2025-11-22 15:51:55] 2025-11-22 20:51:17,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:51:55] 2025-11-22 20:51:17,830 | INFO     | aborting loop
[2025-11-22 15:51:55] 2025-11-22 20:51:18,076 | INFO     | all payload control threads have been joined
[2025-11-22 15:51:55] 2025-11-22 20:51:18,719 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:18,775 | INFO     | [data] control thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:18,806 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:51:55] 2025-11-22 20:51:18,835 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:18,888 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:18,962 | INFO     | all job control threads have been joined
[2025-11-22 15:51:55] 2025-11-22 20:51:18,981 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:51:55] 2025-11-22 20:51:19,082 | INFO     | [payload] control thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:19,323 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:19,388 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:19,878 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:19,968 | INFO     | [job] control thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:19,989 | INFO     | [job] validate thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:19,997 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:20,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:51:55] 2025-11-22 20:51:20,131 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:20,173 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:20,988 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:21,089 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:22,815 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:51:55] 2025-11-22 20:51:47,668 | INFO     | PID=2978787 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 15:51:55] 2025-11-22 20:51:47,668 | INFO     | .. there are 10 such processes running
[2025-11-22 15:51:55] 2025-11-22 20:51:47,668 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:51:55] 2025-11-22 20:51:47,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:51:55] 2025-11-22 20:51:47,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:51:55] 2025-11-22 20:51:48,635 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:51:55] 2025-11-22 20:51:48,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140712193312576)>', '<ExcThread(monitor, started 140711173285632)>']
[2025-11-22 15:51:55] 2025-11-22 20:51:49,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:51:55] 2025-11-22 20:51:49,680 | INFO     | [monitor] control thread has ended
[2025-11-22 15:51:55] 2025-11-22 20:51:53,980 | INFO     | all workflow threads have been joined
[2025-11-22 15:51:55] 2025-11-22 20:51:53,980 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:51:55] 2025-11-22 20:51:53,981 | INFO     | traces error code: 0
[2025-11-22 15:51:55] 2025-11-22 20:51:53,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:51:55] 2025-11-22 20:51:54,358 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:51:55] 2025-11-22 20:51:54,440 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:51:55] 2025-11-22 20:51:54,464 [wrapper] pilotpid: 2978787
[2025-11-22 15:51:55] 2025-11-22 20:51:54,480 [wrapper] Pilot exit status: 0
[2025-11-22 15:51:55] 2025-11-22 20:51:54,569 [wrapper] pandaids: 6894241954
[2025-11-22 15:51:55] 2025-11-22 20:51:54,652 [wrapper] cleanup supervisor_pilot 1718736 2978788
[2025-11-22 15:51:55] 2025-11-22 20:51:54,656 [wrapper] Test setup, not cleaning
[2025-11-22 15:51:55] 2025-11-22 20:51:54,675 [wrapper] apfmon messages muted
[2025-11-22 15:51:55] 2025-11-22 20:51:54,696 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:51:55] 2025-11-22 20:51:54,718 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:51:55]  *** Error codes and diagnostics ***
[2025-11-22 15:51:55]     "exeErrorCode": 0,
[2025-11-22 15:51:55]     "exeErrorDiag": "",
[2025-11-22 15:51:55]     "pilotErrorCode": 0,
[2025-11-22 15:51:55]     "pilotErrorDiag": "",
[2025-11-22 15:51:55]  *** Listing of results directory ***
[2025-11-22 15:51:55] total 1342516
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 19:06 pilot3.tar.gz
[2025-11-22 15:51:55] -rwx------. 1 boincer umatlas     36292 Nov 20 19:49 runpilot2-wrapper.sh
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 19:49 queuedata.json
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas       100 Nov 21 07:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:51:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 07:47 run_atlas
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas       105 Nov 21 07:47 job.xml
[2025-11-22 15:51:55] -rw-r--r--. 2 boincer umatlas 411017488 Nov 21 07:47 EVNT.47493127._002061.pool.root.1
[2025-11-22 15:51:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:47 start_atlas.sh
[2025-11-22 15:51:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 07:47 shared
[2025-11-22 15:51:55] -rw-r--r--. 2 boincer umatlas    590105 Nov 21 07:47 input.tar.gz
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas         0 Nov 21 07:47 boinc_lockfile
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 07:47 pandaJob.out
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas        57 Nov 21 07:47 setup.sh.local
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas    989817 Nov 21 07:48 agis_schedconf.cvmfs.json
[2025-11-22 15:51:55] drwx------. 5 boincer umatlas      4096 Nov 21 07:48 pilot3
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas       533 Nov 22 14:24 boinc_task_state.xml
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas 925958829 Nov 22 15:48 HITS.47533967._000327.pool.root.1
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas      6658 Nov 22 15:49 init_data.xml
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas      1060 Nov 22 15:50 memory_monitor_summary.json
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas   1526164 Nov 22 15:50 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas   2733521 Nov 22 15:50 log.47533967._000327.job.log.tgz.1
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas        95 Nov 22 15:50 pilot_heartbeat.json
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas      8620 Nov 22 15:51 heartbeat.json
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 15:51 boinc_mmap_file
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas        29 Nov 22 15:51 wrapper_checkpoint.txt
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas      4824 Nov 22 15:51 pilotlog.txt
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas  14182588 Nov 22 15:51 log.47533967._000327.job.log.1
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas       353 Nov 22 15:51 output.list
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas       620 Nov 22 15:51 runtime_log
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas  16936960 Nov 22 15:51 result.tar.gz
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas      9339 Nov 22 15:51 runtime_log.err
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas       664 Nov 22 15:51 ff7KDmYWUg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRDHKDmB5MM0n.diag
[2025-11-22 15:51:55] -rw-r--r--. 1 boincer umatlas     21786 Nov 22 15:51 stderr.txt
[2025-11-22 15:51:55] HITS file was successfully produced:
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas 925958829 Nov 22 15:48 shared/HITS.pool.root.1
[2025-11-22 15:51:55]  *** Contents of shared directory: ***
[2025-11-22 15:51:55] total 1322788
[2025-11-22 15:51:55] -rw-r--r--. 2 boincer umatlas 411017488 Nov 21 07:47 ATLAS.root_0
[2025-11-22 15:51:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:47 start_atlas.sh
[2025-11-22 15:51:55] -rw-r--r--. 2 boincer umatlas    590105 Nov 21 07:47 input.tar.gz
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas 925958829 Nov 22 15:48 HITS.pool.root.1
[2025-11-22 15:51:55] -rw-------. 1 boincer umatlas  16936960 Nov 22 15:51 result.tar.gz
15:51:56 (2975110): run_atlas exited; CPU time 298640.595615
15:51:56 (2975110): called boinc_finish(0)

</stderr_txt>
]]>

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