Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:40:19 (31428): wrapper (7.7.26015): starting
12:40:19 (31428): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 12:40:19] Arguments: --nthreads 8
[2025-11-21 12:40:19] Threads: 8
[2025-11-21 12:40:19] Checking for CVMFS
[2025-11-21 12:40:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:40:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:40:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:40:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:40:20] 2.11.2.0 2827 36190 82120 153138 1 82 10303349 20275200 1 130560 0 3309058 99.288 2676145 29503 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 12:40:20] CVMFS is ok
[2025-11-21 12:40:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 12:40:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 12:40:20] Further information can be found at the LHC@home message board.
[2025-11-21 12:40:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:40:20] Checking for apptainer binary...
[2025-11-21 12:40:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:40:20] Running /usr/bin/apptainer --version
[2025-11-21 12:40:20] apptainer version 1.3.2-1.el7
[2025-11-21 12:40:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:40:21] c-204-30.aglt2.org
[2025-11-21 12:40:21] apptainer works
[2025-11-21 12:40:21] Set ATHENA_PROC_NUMBER=8
[2025-11-21 12:40:21] Set ATHENA_CORE_NUMBER=8
[2025-11-21 12:40:22] Starting ATLAS job with PandaID=6894239399
[2025-11-21 12:40:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:27:33 (27397): wrapper (7.7.26015): starting
00:27:33 (27397): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:27:33] Arguments: --nthreads 8
[2025-11-22 00:27:33] Threads: 8
[2025-11-22 00:27:33] This job has been restarted, cleaning up previous attempt
[2025-11-22 00:27:34] Checking for CVMFS
[2025-11-22 00:27:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:27:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:27:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:27:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:27:34] 2.11.2.0 2827 36898 79576 153161 3 49 11179991 20275201 1 130560 0 3531120 99.331 2705093 29555 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:27:34] CVMFS is ok
[2025-11-22 00:27:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:27:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:27:34] Further information can be found at the LHC@home message board.
[2025-11-22 00:27:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:27:34] Checking for apptainer binary...
[2025-11-22 00:27:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:27:34] Running /usr/bin/apptainer --version
[2025-11-22 00:27:34] apptainer version 1.3.2-1.el7
[2025-11-22 00:27:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:27:36] c-204-30.aglt2.org
[2025-11-22 00:27:36] apptainer works
[2025-11-22 00:27:36] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:27:36] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:27:36] Starting ATLAS job with PandaID=6894239399
[2025-11-22 00:27:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 12:49:24]  *** The last 200 lines of the pilot log: ***
[2025-11-22 12:49:24] 2025-11-22 17:48:51,375 | INFO     | sum of square deviations: 119638841268.60313
[2025-11-22 12:49:24] 2025-11-22 17:48:51,386 | INFO     | sum of deviations: 610425734030.64
[2025-11-22 12:49:24] 2025-11-22 17:48:51,387 | INFO     | mean x: 1763811480.1195054
[2025-11-22 12:49:24] 2025-11-22 17:48:51,387 | INFO     | mean y: 3147317.2225274723
[2025-11-22 12:49:24] 2025-11-22 17:48:51,387 | INFO     | intersect: -8996237046.809853
[2025-11-22 12:49:24] 2025-11-22 17:48:51,388 | INFO     | chi2: 6.1560740513855245
[2025-11-22 12:49:24] 2025-11-22 17:48:51,389 | INFO     | sum of square deviations: 117190784081.67064
[2025-11-22 12:49:24] 2025-11-22 17:48:51,400 | INFO     | sum of deviations: 855492753032.1696
[2025-11-22 12:49:24] 2025-11-22 17:48:51,400 | INFO     | mean x: 1763811327.6237898
[2025-11-22 12:49:24] 2025-11-22 17:48:51,400 | INFO     | mean y: 3162578.478561549
[2025-11-22 12:49:24] 2025-11-22 17:48:51,400 | INFO     | intersect: -12872660553.19897
[2025-11-22 12:49:24] 2025-11-22 17:48:51,401 | INFO     | chi2: 3.4338510854902156
[2025-11-22 12:49:24] 2025-11-22 17:48:51,401 | INFO     | current chi2=3.4338510854902156 (change=44.22011403976904 %)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,402 | INFO     | sum of square deviations: 114776355432.21065
[2025-11-22 12:49:24] 2025-11-22 17:48:51,412 | INFO     | sum of deviations: 992596724679.4543
[2025-11-22 12:49:24] 2025-11-22 17:48:51,412 | INFO     | mean x: 1763811175.1281338
[2025-11-22 12:49:24] 2025-11-22 17:48:51,413 | INFO     | mean y: 3171233.9080779944
[2025-11-22 12:49:24] 2025-11-22 17:48:51,413 | INFO     | intersect: -15250433820.830194
[2025-11-22 12:49:24] 2025-11-22 17:48:51,413 | INFO     | chi2: 2.5173976393202104
[2025-11-22 12:49:24] 2025-11-22 17:48:51,414 | INFO     | current chi2=2.5173976393202104 (change=26.688794107656317 %)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,414 | INFO     | sum of square deviations: 112395279081.98874
[2025-11-22 12:49:24] 2025-11-22 17:48:51,425 | INFO     | sum of deviations: 1030248532327.8243
[2025-11-22 12:49:24] 2025-11-22 17:48:51,425 | INFO     | mean x: 1763811022.631136
[2025-11-22 12:49:24] 2025-11-22 17:48:51,425 | INFO     | mean y: 3173633.6115007014
[2025-11-22 12:49:24] 2025-11-22 17:48:51,425 | INFO     | intersect: -16164442410.50904
[2025-11-22 12:49:24] 2025-11-22 17:48:51,426 | INFO     | chi2: 2.310768113724376
[2025-11-22 12:49:24] 2025-11-22 17:48:51,426 | INFO     | current chi2=2.310768113724376 (change=8.208060672196066 %)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,426 | INFO     | right removable region: 712
[2025-11-22 12:49:24] 2025-11-22 17:48:51,427 | INFO     | sum of square deviations: 117190508971.67056
[2025-11-22 12:49:24] 2025-11-22 17:48:51,438 | INFO     | sum of deviations: 396160498850.40625
[2025-11-22 12:49:24] 2025-11-22 17:48:51,438 | INFO     | mean x: 1763811632.6237898
[2025-11-22 12:49:24] 2025-11-22 17:48:51,438 | INFO     | mean y: 3160641.46473029
[2025-11-22 12:49:24] 2025-11-22 17:48:51,438 | INFO     | intersect: -5959374229.232907
[2025-11-22 12:49:24] 2025-11-22 17:48:51,439 | INFO     | chi2: 3.977552118967693
[2025-11-22 12:49:24] 2025-11-22 17:48:51,439 | INFO     | current chi2=3.977552118967693 (change=35.38816970415618 %)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,440 | INFO     | sum of square deviations: 114775893174.71849
[2025-11-22 12:49:24] 2025-11-22 17:48:51,451 | INFO     | sum of deviations: 354803360729.72943
[2025-11-22 12:49:24] 2025-11-22 17:48:51,451 | INFO     | mean x: 1763811785.125348
[2025-11-22 12:49:24] 2025-11-22 17:48:51,451 | INFO     | mean y: 3163252.080779944
[2025-11-22 12:49:24] 2025-11-22 17:48:51,451 | INFO     | intersect: -5449256517.848941
[2025-11-22 12:49:24] 2025-11-22 17:48:51,452 | INFO     | chi2: 3.937261347731898
[2025-11-22 12:49:24] 2025-11-22 17:48:51,452 | INFO     | current chi2=3.937261347731898 (change=1.0129539483256786 %)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,452 | INFO     | left removable region: 20
[2025-11-22 12:49:24] 2025-11-22 17:48:51,453 | INFO     | sum of square deviations: 102753493780.83647
[2025-11-22 12:49:24] 2025-11-22 17:48:51,463 | INFO     | sum of deviations: 720597031776.1616
[2025-11-22 12:49:24] 2025-11-22 17:48:51,463 | INFO     | mean x: 1763811602.1430635
[2025-11-22 12:49:24] 2025-11-22 17:48:51,463 | INFO     | mean y: 3193562.8670520233
[2025-11-22 12:49:24] 2025-11-22 17:48:51,463 | INFO     | intersect: -12366190273.633589
[2025-11-22 12:49:24] 2025-11-22 17:48:51,464 | INFO     | chi2: 0.06272226610341776
[2025-11-22 12:49:24] 2025-11-22 17:48:51,464 | INFO     | current memory leak: 7.01 B/s (using 692 data points, chi2=0.06)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,465 | INFO     | could have reported an average CPU frequency of 2152 MHz (28 samples)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,465 | INFO     | ..............................
[2025-11-22 12:49:24] 2025-11-22 17:48:51,465 | INFO     | . Timing measurements:
[2025-11-22 12:49:24] 2025-11-22 17:48:51,465 | INFO     | . get job = 0 s
[2025-11-22 12:49:24] 2025-11-22 17:48:51,465 | INFO     | . initial setup = 2 s
[2025-11-22 12:49:24] 2025-11-22 17:48:51,465 | INFO     | . payload setup = 8 s
[2025-11-22 12:49:24] 2025-11-22 17:48:51,466 | INFO     | . stage-in = 0 s
[2025-11-22 12:49:24] 2025-11-22 17:48:51,466 | INFO     | . payload execution = 44412 s
[2025-11-22 12:49:24] 2025-11-22 17:48:51,466 | INFO     | . stage-out = 3 s
[2025-11-22 12:49:24] 2025-11-22 17:48:51,466 | INFO     | . log creation = 0 s
[2025-11-22 12:49:24] 2025-11-22 17:48:51,466 | INFO     | ..............................
[2025-11-22 12:49:24] 2025-11-22 17:48:51,603 | INFO     | 
[2025-11-22 12:49:24] 2025-11-22 17:48:51,604 | INFO     | job summary report
[2025-11-22 12:49:24] 2025-11-22 17:48:51,604 | INFO     | --------------------------------------------------
[2025-11-22 12:49:24] 2025-11-22 17:48:51,604 | INFO     | PanDA job id: 6894239399
[2025-11-22 12:49:24] 2025-11-22 17:48:51,604 | INFO     | task id: 47533967
[2025-11-22 12:49:24] 2025-11-22 17:48:51,604 | INFO     | errors: (none)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,605 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 12:49:24] 2025-11-22 17:48:51,605 | INFO     | pilot state: finished 
[2025-11-22 12:49:24] 2025-11-22 17:48:51,605 | INFO     | transexitcode: 0
[2025-11-22 12:49:24] 2025-11-22 17:48:51,605 | INFO     | exeerrorcode: 0
[2025-11-22 12:49:24] 2025-11-22 17:48:51,605 | INFO     | exeerrordiag: 
[2025-11-22 12:49:24] 2025-11-22 17:48:51,605 | INFO     | exitcode: 0
[2025-11-22 12:49:24] 2025-11-22 17:48:51,606 | INFO     | exitmsg: OK
[2025-11-22 12:49:24] 2025-11-22 17:48:51,606 | INFO     | cpuconsumptiontime: 343230 s
[2025-11-22 12:49:24] 2025-11-22 17:48:51,606 | INFO     | nevents: 1000
[2025-11-22 12:49:24] 2025-11-22 17:48:51,606 | INFO     | neventsw: 0
[2025-11-22 12:49:24] 2025-11-22 17:48:51,606 | INFO     | pid: 6265
[2025-11-22 12:49:24] 2025-11-22 17:48:51,606 | INFO     | pgrp: 6265
[2025-11-22 12:49:24] 2025-11-22 17:48:51,607 | INFO     | corecount: 8
[2025-11-22 12:49:24] 2025-11-22 17:48:51,607 | INFO     | event service: False
[2025-11-22 12:49:24] 2025-11-22 17:48:51,607 | INFO     | sizes: {0: 2297926, 1: 2298782, 7: 2299044, 12: 2299072, 44424: 2344745, 44425: 2344744, 44429: 2353922, 44431: 2353978, 44440: 2354224}
[2025-11-22 12:49:24] 2025-11-22 17:48:51,607 | INFO     | --------------------------------------------------
[2025-11-22 12:49:24] 2025-11-22 17:48:51,607 | INFO     | 
[2025-11-22 12:49:24] 2025-11-22 17:48:51,608 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 12:49:24] 2025-11-22 17:48:51,638 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,639 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,639 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,639 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,640 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,640 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,642 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,642 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,642 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 12:49:24] 2025-11-22 17:48:51,642 | INFO     | job 6894239399 has completed (purged errors)
[2025-11-22 12:49:24] 2025-11-22 17:48:51,643 | INFO     | overall cleanup function is called
[2025-11-22 12:49:24] 2025-11-22 17:48:52,654 | INFO     | --- collectZombieJob: --- 10, [6265]
[2025-11-22 12:49:24] 2025-11-22 17:48:52,654 | INFO     | zombie collector waiting for pid 6265
[2025-11-22 12:49:24] 2025-11-22 17:48:52,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 12:49:24] 2025-11-22 17:48:52,655 | INFO     | collected zombie processes
[2025-11-22 12:49:24] 2025-11-22 17:48:52,655 | INFO     | will attempt to kill all subprocesses of pid=6265
[2025-11-22 12:49:24] 2025-11-22 17:48:52,746 | INFO     | process IDs to be killed: [6265] (in reverse order)
[2025-11-22 12:49:24] 2025-11-22 17:48:52,805 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 12:49:24] 2025-11-22 17:48:52,806 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 12:49:24] 2025-11-22 17:48:52,811 | INFO     | did not find any defunct processes belonging to 6265
[2025-11-22 12:49:24] 2025-11-22 17:48:52,814 | INFO     | did not find any defunct processes belonging to 6265
[2025-11-22 12:49:24] 2025-11-22 17:48:52,817 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 12:49:24] 2025-11-22 17:48:52,817 | INFO     | ready for new job
[2025-11-22 12:49:24] 2025-11-22 17:48:52,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 12:49:24] 2025-11-22 17:48:52,821 | INFO     | ***************************************
[2025-11-22 12:49:24] 2025-11-22 17:48:52,821 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 12:49:24] 2025-11-22 17:48:52,822 | INFO     | ***************************************
[2025-11-22 12:49:24] 2025-11-22 17:48:52,822 | INFO     | 
[2025-11-22 12:49:24] 2025-11-22 17:48:52,822 | INFO     | architecture information:
[2025-11-22 12:49:24] 2025-11-22 17:48:52,823 | INFO     | executing command: cat /etc/os-release
[2025-11-22 12:49:24] 2025-11-22 17:48:52,843 | INFO     | cat /etc/os-release:
[2025-11-22 12:49:24] NAME="CentOS Linux"
[2025-11-22 12:49:24] VERSION="7 (Core)"
[2025-11-22 12:49:24] ID="centos"
[2025-11-22 12:49:24] ID_LIKE="rhel fedora"
[2025-11-22 12:49:24] VERSION_ID="7"
[2025-11-22 12:49:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 12:49:24] ANSI_COLOR="0;31"
[2025-11-22 12:49:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 12:49:24] HOME_URL="https://www.centos.org/"
[2025-11-22 12:49:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 12:49:24] 
[2025-11-22 12:49:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 12:49:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 12:49:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 12:49:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 12:49:24] 
[2025-11-22 12:49:24] 2025-11-22 17:48:52,843 | INFO     | ***************************************
[2025-11-22 12:49:24] 2025-11-22 17:48:53,346 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 12:49:24] 2025-11-22 17:48:53,369 | INFO     | sufficient remaining disk space (17024679936 B)
[2025-11-22 12:49:24] 2025-11-22 17:48:53,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 12:49:24] 2025-11-22 17:48:53,369 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 12:49:24] 2025-11-22 17:48:53,370 | INFO     | update_server=False
[2025-11-22 12:49:24] 2025-11-22 17:48:53,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 12:49:24] 2025-11-22 17:48:53,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:49:24] 2025-11-22 17:48:53,607 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 12:49:24] 2025-11-22 17:48:53,609 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 12:49:24] 2025-11-22 17:48:53,609 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 12:49:24] 2025-11-22 17:48:53,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:49:24] 2025-11-22 17:48:53,610 | INFO     | will abort loop
[2025-11-22 12:49:24] 2025-11-22 17:48:53,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 12:49:24] 2025-11-22 17:48:53,973 | INFO     | all job control threads have been joined
[2025-11-22 12:49:24] 2025-11-22 17:48:54,294 | INFO     | all data control threads have been joined
[2025-11-22 12:49:24] 2025-11-22 17:48:54,375 | INFO     | [job] queue monitor thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:54,376 | INFO     | [job] retrieve thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:54,399 | INFO     | [payload] failed_post thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:54,615 | INFO     | [job] job monitor thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:54,686 | INFO     | all payload control threads have been joined
[2025-11-22 12:49:24] 2025-11-22 17:48:54,799 | INFO     | [data] copytool_in thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:54,954 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:54,979 | INFO     | [job] control thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:55,228 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:55,261 | INFO     | [job] validate thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:55,298 | INFO     | [data] control thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:55,314 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:55,373 | INFO     | [payload] validate_post thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:55,691 | INFO     | [payload] control thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:55,845 | INFO     | [data] copytool_out thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:48:57,609 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:49:03,618 | INFO     | job.realtimelogging is not enabled
[2025-11-22 12:49:24] 2025-11-22 17:49:04,622 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 12:49:24] 2025-11-22 17:49:06,985 | INFO     | [monitor] cgroup control has ended
[2025-11-22 12:49:24] 2025-11-22 17:49:08,061 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140003201509184)>', '<ExcThread(monitor, started 140002017134336)>']
[2025-11-22 12:49:24] 2025-11-22 17:49:13,087 | INFO     | all workflow threads have been joined
[2025-11-22 12:49:24] 2025-11-22 17:49:13,087 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 12:49:24] 2025-11-22 17:49:13,088 | INFO     | traces error code: 0
[2025-11-22 12:49:24] 2025-11-22 17:49:13,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 12:49:24] 2025-11-22 17:49:23,735 | INFO     | PID=31950 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 12:49:24] 2025-11-22 17:49:23,736 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 12:49:24] 2025-11-22 17:49:23,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 12:49:24] 2025-11-22 17:49:23,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 12:49:24] 2025-11-22 17:49:23,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 12:49:24] 2025-11-22 17:49:23,736 | CRITICAL | thread 'MainThread' is not alive
[2025-11-22 12:49:24] 2025-11-22 17:49:23,737 | INFO     | [monitor] control thread has ended
[2025-11-22 12:49:24] 2025-11-22 17:49:23,851 [wrapper] ==== pilot stdout END ====
[2025-11-22 12:49:24] 2025-11-22 17:49:23,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 12:49:24] 2025-11-22 17:49:23,860 [wrapper] pilotpid: 31950
[2025-11-22 12:49:24] 2025-11-22 17:49:23,864 [wrapper] Pilot exit status: 0
[2025-11-22 12:49:24] 2025-11-22 17:49:23,882 [wrapper] pandaids: 6894239399 6894239399
[2025-11-22 12:49:24] 2025-11-22 17:49:23,926 [wrapper] cleanup supervisor_pilot 17796 31951
[2025-11-22 12:49:24] 2025-11-22 17:49:23,931 [wrapper] Test setup, not cleaning
[2025-11-22 12:49:24] 2025-11-22 17:49:23,936 [wrapper] apfmon messages muted
[2025-11-22 12:49:24] 2025-11-22 17:49:23,941 [wrapper] ==== wrapper stdout END ====
[2025-11-22 12:49:24] 2025-11-22 17:49:23,946 [wrapper] ==== wrapper stderr END ====
[2025-11-22 12:49:24]  *** Error codes and diagnostics ***
[2025-11-22 12:49:24]     "exeErrorCode": 0,
[2025-11-22 12:49:24]     "exeErrorDiag": "",
[2025-11-22 12:49:24]     "pilotErrorCode": 0,
[2025-11-22 12:49:24]     "pilotErrorDiag": "",
[2025-11-22 12:49:24]  *** Listing of results directory ***
[2025-11-22 12:49:24] total 1715552
[2025-11-22 12:49:24] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 19:06 pilot3.tar.gz
[2025-11-22 12:49:24] -rwx------ 1 boincer umatlas     36292 Nov 20 19:38 runpilot2-wrapper.sh
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 19:38 queuedata.json
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas       100 Nov 21 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 12:49:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 12:40 run_atlas
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas       105 Nov 21 12:40 job.xml
[2025-11-22 12:49:24] -rw-r--r-- 3 boincer umatlas 408693068 Nov 21 12:40 EVNT.47493127._002049.pool.root.1
[2025-11-22 12:49:24] -rw-r--r-- 3 boincer umatlas 408693068 Nov 21 12:40 ATLAS.root_0
[2025-11-22 12:49:24] drwxrwx--x 2 boincer umatlas      4096 Nov 21 12:40 shared
[2025-11-22 12:49:24] -rw-r--r-- 2 boincer umatlas    590093 Nov 21 12:40 input.tar.gz
[2025-11-22 12:49:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 12:40 start_atlas.sh
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas         0 Nov 21 12:40 boinc_lockfile
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 00:27 pandaJob.out
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas        57 Nov 22 00:27 setup.sh.local
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas    989752 Nov 22 00:27 agis_schedconf.cvmfs.json
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas       532 Nov 22 12:35 boinc_task_state.xml
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas      5912 Nov 22 12:46 init_data.xml
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas 919372908 Nov 22 12:47 HITS.47533967._000202.pool.root.1
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas      1062 Nov 22 12:48 memory_monitor_summary.json
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas   1526164 Nov 22 12:48 agis_ddmendpoints.agis.ALL.json
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas   1969107 Nov 22 12:48 log.47533967._000202.job.log.tgz.1
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas      8660 Nov 22 12:48 heartbeat.json
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 12:49 boinc_mmap_file
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas        29 Nov 22 12:49 wrapper_checkpoint.txt
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas        96 Nov 22 12:49 pilot_heartbeat.json
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas       815 Nov 22 12:49 pilotlog.txt
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas   6054063 Nov 22 12:49 log.47533967._000202.job.log.1
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas       353 Nov 22 12:49 output.list
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas       620 Nov 22 12:49 runtime_log
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas   8038400 Nov 22 12:49 result.tar.gz
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas      9428 Nov 22 12:49 runtime_log.err
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas       793 Nov 22 12:49 0qcLDmNLUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4jIKDm7sEHYn.diag
[2025-11-22 12:49:24] -rw-r--r-- 1 boincer umatlas     23280 Nov 22 12:49 stderr.txt
[2025-11-22 12:49:24] HITS file was successfully produced:
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas 919372908 Nov 22 12:47 shared/HITS.pool.root.1
[2025-11-22 12:49:24]  *** Contents of shared directory: ***
[2025-11-22 12:49:24] total 1305396
[2025-11-22 12:49:24] -rw-r--r-- 3 boincer umatlas 408693068 Nov 21 12:40 ATLAS.root_0
[2025-11-22 12:49:24] -rw-r--r-- 2 boincer umatlas    590093 Nov 21 12:40 input.tar.gz
[2025-11-22 12:49:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 12:40 start_atlas.sh
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas 919372908 Nov 22 12:47 HITS.pool.root.1
[2025-11-22 12:49:24] -rw------- 1 boincer umatlas   8038400 Nov 22 12:49 result.tar.gz
12:49:25 (27397): run_atlas exited; CPU time 340946.113650
12:49:25 (27397): called boinc_finish(0)

</stderr_txt>
]]>

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