Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:44:26 (2576337): wrapper (7.7.26015): starting
13:44:26 (2576337): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 13:44:26] Arguments: --nthreads 3
[2025-11-21 13:44:26] Threads: 3
[2025-11-21 13:44:26] Checking for CVMFS
[2025-11-21 13:44:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 13:44:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 13:44:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 13:44:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 13:44:26] 2.9.2.0 16720 1431 70732 153128 0 88 34534098 36864000 0 130560 0 20296458 99.999 42754 1758 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 13:44:26] CVMFS is ok
[2025-11-21 13:44:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 13:44:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 13:44:26] Further information can be found at the LHC@home message board.
[2025-11-21 13:44:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 13:44:26] Checking for apptainer binary...
[2025-11-21 13:44:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 13:44:26] Running /usr/bin/apptainer --version
[2025-11-21 13:44:26] apptainer version 1.4.1-1.1
[2025-11-21 13:44:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 13:44:26] thA335
[2025-11-21 13:44:26] apptainer works
[2025-11-21 13:44:26] Set ATHENA_PROC_NUMBER=3
[2025-11-21 13:44:26] Set ATHENA_CORE_NUMBER=3
[2025-11-21 13:44:26] Starting ATLAS job with PandaID=6894239123
[2025-11-21 13:44:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 13:48:44]  *** The last 200 lines of the pilot log: ***
[2025-11-21 13:48:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 13:48:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 13:48:45] 
[2025-11-21 13:48:45] 2025-11-21 12:47:51,603 | INFO     | ***************************************
[2025-11-21 13:48:45] 2025-11-21 12:47:52,106 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 13:48:45] 2025-11-21 12:47:52,120 | INFO     | sufficient remaining disk space (827506819072 B)
[2025-11-21 13:48:45] 2025-11-21 12:47:52,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 13:48:45] 2025-11-21 12:47:52,120 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 13:48:45] 2025-11-21 12:47:52,120 | INFO     | update_server=False
[2025-11-21 13:48:45] 2025-11-21 12:47:52,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 13:48:45] 2025-11-21 12:47:52,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:48:45] 2025-11-21 12:47:52,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 13:48:45] 2025-11-21 12:47:52,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 13:48:45] 2025-11-21 12:47:52,611 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:48:45] 2025-11-21 12:47:52,611 | INFO     | aborting loop
[2025-11-21 13:48:45] 2025-11-21 12:47:53,058 | INFO     | all payload control threads have been joined
[2025-11-21 13:48:45] 2025-11-21 12:47:53,126 | INFO     | [job] retrieve thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:53,127 | INFO     | [job] queue monitor thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:53,175 | INFO     | all data control threads have been joined
[2025-11-21 13:48:45] 2025-11-21 12:47:53,450 | INFO     | all job control threads have been joined
[2025-11-21 13:48:45] 2025-11-21 12:47:53,577 | INFO     | [payload] validate_post thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:53,617 | INFO     | [job] job monitor thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:53,749 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:53,901 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,046 | INFO     | [job] validate thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,062 | INFO     | [payload] control thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,115 | INFO     | [payload] failed_post thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,127 | INFO     | [data] copytool_out thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,136 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,176 | INFO     | [data] control thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,181 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,269 | INFO     | [data] copytool_in thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:54,456 | INFO     | [job] control thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:47:56,127 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 13:48:45] 2025-11-21 12:48:21,808 | INFO     | PID=2580065 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 13:48:45] 2025-11-21 12:48:21,808 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 13:48:45] 2025-11-21 12:48:21,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 13:48:45] 2025-11-21 12:48:21,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 13:48:45] 2025-11-21 12:48:38,835 | INFO     | [monitor] cgroup control has ended
[2025-11-21 13:48:45] 2025-11-21 12:48:39,841 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952884545344)>', '<ExcThread(monitor, started 139952146855680)>']
[2025-11-21 13:48:45] 2025-11-21 12:48:39,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 13:48:45] 2025-11-21 12:48:39,904 | INFO     | [monitor] control thread has ended
[2025-11-21 13:48:45] 2025-11-21 12:48:44,867 | INFO     | all workflow threads have been joined
[2025-11-21 13:48:45] 2025-11-21 12:48:44,867 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 13:48:45] 2025-11-21 12:48:44,868 | INFO     | traces error code: 0
[2025-11-21 13:48:45] 2025-11-21 12:48:44,868 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 13:48:45] 2025-11-21 12:48:44,913 [wrapper] ==== pilot stdout END ====
[2025-11-21 13:48:45] 2025-11-21 12:48:44,916 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 13:48:45] 2025-11-21 12:48:44,920 [wrapper] pilotpid: 2580065
[2025-11-21 13:48:45] 2025-11-21 12:48:44,923 [wrapper] Pilot exit status: 0
[2025-11-21 13:48:45] 2025-11-21 12:48:44,930 [wrapper] pandaids: 6894239123
[2025-11-21 13:48:45] 2025-11-21 12:48:44,947 [wrapper] cleanup supervisor_pilot 2580071 2580066
[2025-11-21 13:48:45] 2025-11-21 12:48:44,950 [wrapper] Test setup, not cleaning
[2025-11-21 13:48:45] 2025-11-21 12:48:44,953 [wrapper] apfmon messages muted
[2025-11-21 13:48:45] 2025-11-21 12:48:44,955 [wrapper] ==== wrapper stdout END ====
[2025-11-21 13:48:45] 2025-11-21 12:48:44,958 [wrapper] ==== wrapper stderr END ====
[2025-11-21 13:48:45]  *** Error codes and diagnostics ***
[2025-11-21 13:48:45]     "exeErrorCode": 65,
[2025-11-21 13:48:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 13:48:45]     "pilotErrorCode": 1305,
[2025-11-21 13:48:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 13:48:45]  *** Listing of results directory ***
[2025-11-21 13:48:45] total 406272
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc    576529 Nov 21 01:06 pilot3.tar.gz
[2025-11-21 13:48:45] -rwx------ 1 boinc boinc     36292 Nov 21 01:35 runpilot2-wrapper.sh
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc      5112 Nov 21 01:35 queuedata.json
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc       100 Nov 21 13:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 13:48:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 13:44 run_atlas
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc       105 Nov 21 13:44 job.xml
[2025-11-21 13:48:45] -rw-r--r-- 2 boinc boinc 411831843 Nov 21 13:44 EVNT.47493127._002048.pool.root.1
[2025-11-21 13:48:45] -rw-r--r-- 2 boinc boinc    590101 Nov 21 13:44 input.tar.gz
[2025-11-21 13:48:45] -rw-r--r-- 2 boinc boinc     15847 Nov 21 13:44 start_atlas.sh
[2025-11-21 13:48:45] drwxrwx--x 2 boinc boinc      4096 Nov 21 13:44 shared
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc         0 Nov 21 13:44 boinc_setup_complete
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc      6194 Nov 21 13:44 init_data.xml
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc         0 Nov 21 13:44 boinc_lockfile
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc      2784 Nov 21 13:44 pandaJob.out
[2025-11-21 13:48:45] -rw------- 1 boinc boinc    989817 Nov 21 13:44 agis_schedconf.cvmfs.json
[2025-11-21 13:48:45] -rw------- 1 boinc boinc   1526164 Nov 21 13:44 agis_ddmendpoints.agis.ALL.json
[2025-11-21 13:48:45] drwx------ 5 boinc boinc      4096 Nov 21 13:44 pilot3
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc       524 Nov 21 13:45 boinc_task_state.xml
[2025-11-21 13:48:45] -rw------- 1 boinc boinc       955 Nov 21 13:45 memory_monitor_summary.json
[2025-11-21 13:48:45] -rw------- 1 boinc boinc     55804 Nov 21 13:45 log.47533967._000193.job.log.tgz.1
[2025-11-21 13:48:45] -rw------- 1 boinc boinc        95 Nov 21 13:47 pilot_heartbeat.json
[2025-11-21 13:48:45] -rw------- 1 boinc boinc      8402 Nov 21 13:47 heartbeat.json
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc      8192 Nov 21 13:48 boinc_mmap_file
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc        23 Nov 21 13:48 wrapper_checkpoint.txt
[2025-11-21 13:48:45] -rw------- 1 boinc boinc      4752 Nov 21 13:48 pilotlog.txt
[2025-11-21 13:48:45] -rw------- 1 boinc boinc     93153 Nov 21 13:48 log.47533967._000193.job.log.1
[2025-11-21 13:48:45] -rw------- 1 boinc boinc       186 Nov 21 13:48 output.list
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc       620 Nov 21 13:48 runtime_log
[2025-11-21 13:48:45] -rw------- 1 boinc boinc    163840 Nov 21 13:48 result.tar.gz
[2025-11-21 13:48:45] -rw------- 1 boinc boinc       649 Nov 21 13:48 xH8MDmPIUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjjIKDmlRKSam.diag
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc      8744 Nov 21 13:48 runtime_log.err
[2025-11-21 13:48:45] -rw-r--r-- 1 boinc boinc      8470 Nov 21 13:48 stderr.txt
[2025-11-21 13:48:45] No HITS result produced
[2025-11-21 13:48:45]  *** Contents of shared directory: ***
[2025-11-21 13:48:45] total 402940
[2025-11-21 13:48:45] -rw-r--r-- 2 boinc boinc 411831843 Nov 21 13:44 ATLAS.root_0
[2025-11-21 13:48:45] -rw-r--r-- 2 boinc boinc    590101 Nov 21 13:44 input.tar.gz
[2025-11-21 13:48:45] -rw-r--r-- 2 boinc boinc     15847 Nov 21 13:44 start_atlas.sh
[2025-11-21 13:48:45] -rw------- 1 boinc boinc    163840 Nov 21 13:48 result.tar.gz
13:48:46 (2576337): run_atlas exited; CPU time 31.677945
13:48:46 (2576337): called boinc_finish(0)

</stderr_txt>
]]>

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