Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:38:02 (1446195): wrapper (7.7.26015): starting
07:38:02 (1446195): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 07:38:02] Arguments: --nthreads 8
[2025-11-21 07:38:02] Threads: 8
[2025-11-21 07:38:02] Checking for CVMFS
[2025-11-21 07:38:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:38:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:38:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:38:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:38:04] 2.13.3.0 5354 207 95184 153127 0 306 33383337 40960000 16402 16776704 0 1679726 99.859 557961 32383 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 07:38:04] CVMFS is ok
[2025-11-21 07:38:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:38:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:38:04] Further information can be found at the LHC@home message board.
[2025-11-21 07:38:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:38:04] Checking for apptainer binary...
[2025-11-21 07:38:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:38:04] Running /usr/bin/apptainer --version
[2025-11-21 07:38:04] apptainer version 1.4.4-1.el9
[2025-11-21 07:38:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:38:05] lc-12-9.aglt2.org
[2025-11-21 07:38:05] apptainer works
[2025-11-21 07:38:05] Set ATHENA_PROC_NUMBER=8
[2025-11-21 07:38:05] Set ATHENA_CORE_NUMBER=8
[2025-11-21 07:38:05] Starting ATLAS job with PandaID=6894239401
[2025-11-21 07:38:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:30:18 (4270): wrapper (7.7.26015): starting
08:30:18 (4270): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 08:30:18] Arguments: --nthreads 8
[2025-11-21 08:30:18] Threads: 8
[2025-11-21 08:30:18] This job has been restarted, cleaning up previous attempt
[2025-11-21 08:30:18] Checking for CVMFS
[2025-11-21 08:30:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 08:30:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 08:30:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 08:30:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 08:30:25] 2.13.3.0 5206 0 31848 153129 3 1 35191054 40960001 0 16776704 0 0 0.000 1291 33102 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 08:30:25] CVMFS is ok
[2025-11-21 08:30:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 08:30:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 08:30:25] Further information can be found at the LHC@home message board.
[2025-11-21 08:30:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 08:30:25] Checking for apptainer binary...
[2025-11-21 08:30:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 08:30:25] Running /usr/bin/apptainer --version
[2025-11-21 08:30:25] apptainer version 1.4.4-1.el9
[2025-11-21 08:30:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 08:30:25] lc-12-9.aglt2.org
[2025-11-21 08:30:25] apptainer works
[2025-11-21 08:30:25] Set ATHENA_PROC_NUMBER=8
[2025-11-21 08:30:25] Set ATHENA_CORE_NUMBER=8
[2025-11-21 08:30:25] Starting ATLAS job with PandaID=6894239401
[2025-11-21 08:30:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:33:51]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:33:51] 2025-11-23 00:32:49,806 | INFO     | time since job start (126129s) is within the limit (172800.0s)
[2025-11-22 19:33:51] 2025-11-23 00:32:50,496 | INFO     | monitor loop #6033: job 0:6894239401 is in state 'finished'
[2025-11-22 19:33:51] 2025-11-23 00:32:50,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:33:51] 2025-11-23 00:32:51,813 | INFO     | time since job start (126131s) is within the limit (172800.0s)
[2025-11-22 19:33:51] 2025-11-23 00:32:53,036 | INFO     | monitor loop #6034: job 0:6894239401 is in state 'finished'
[2025-11-22 19:33:51] 2025-11-23 00:32:53,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:33:51] 2025-11-23 00:32:53,829 | INFO     | time since job start (126133s) is within the limit (172800.0s)
[2025-11-22 19:33:51] 2025-11-23 00:32:55,577 | INFO     | monitor loop #6035: job 0:6894239401 is in state 'finished'
[2025-11-22 19:33:51] 2025-11-23 00:32:55,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:33:51] 2025-11-23 00:32:55,863 | INFO     | time since job start (126135s) is within the limit (172800.0s)
[2025-11-22 19:33:51] 2025-11-23 00:32:56,982 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 19:33:51] 2025-11-23 00:32:56,989 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2592.2852083333337
[2025-11-22 19:33:51] 2025-11-23 00:32:57,010 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6894239401/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:33:51] 2025-11-23 00:32:57,011 | INFO     | extracted standard info from prmon json
[2025-11-22 19:33:51] 2025-11-23 00:32:57,011 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:33:51] 2025-11-23 00:32:57,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:33:51] 2025-11-23 00:32:57,060 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:33:51] 2025-11-23 00:32:57,064 | INFO     | sum of square deviations: 2738386895187.656
[2025-11-22 19:33:51] 2025-11-23 00:32:57,850 | INFO     | sum of deviations: 4389808718277.051
[2025-11-22 19:33:51] 2025-11-23 00:32:57,851 | INFO     | mean x: 1763794886.7537494
[2025-11-22 19:33:51] 2025-11-23 00:32:57,851 | INFO     | mean y: 2989594.7034349297
[2025-11-22 19:33:51] 2025-11-23 00:32:57,851 | INFO     | intersect: -2824486020.495746
[2025-11-22 19:33:51] 2025-11-23 00:32:57,903 | INFO     | chi2: 15.595608522912704
[2025-11-22 19:33:51] 2025-11-23 00:32:57,933 | INFO     | sum of square deviations: 2718566141384.228
[2025-11-22 19:33:51] 2025-11-23 00:32:58,023 | INFO     | time since job start (126138s) is within the limit (172800.0s)
[2025-11-22 19:33:51] 2025-11-23 00:32:58,235 | INFO     | monitor loop #6036: job 0:6894239401 is in state 'finished'
[2025-11-22 19:33:51] 2025-11-23 00:32:58,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:33:51] 2025-11-23 00:32:59,443 | INFO     | sum of deviations: 5091979116264.422
[2025-11-22 19:33:51] 2025-11-23 00:32:59,444 | INFO     | mean x: 1763794734.2677011
[2025-11-22 19:33:51] 2025-11-23 00:32:59,444 | INFO     | mean y: 2994996.0426770127
[2025-11-22 19:33:51] 2025-11-23 00:32:59,444 | INFO     | intersect: -3300660491.881291
[2025-11-22 19:33:51] 2025-11-23 00:32:59,469 | INFO     | chi2: 12.542448830775895
[2025-11-22 19:33:51] 2025-11-23 00:32:59,469 | INFO     | current chi2=12.542448830775895 (change=19.577047523674235 %)
[2025-11-22 19:33:51] 2025-11-23 00:32:59,469 | INFO     | right removable region: 2061
[2025-11-22 19:33:51] 2025-11-23 00:32:59,495 | INFO     | sum of square deviations: 2718559012507.768
[2025-11-22 19:33:51] 2025-11-23 00:33:00,071 | INFO     | time since job start (126140s) is within the limit (172800.0s)
[2025-11-22 19:33:51] 2025-11-23 00:33:00,414 | INFO     | sum of deviations: 3933957629270.9697
[2025-11-22 19:33:51] 2025-11-23 00:33:00,415 | INFO     | mean x: 1763795039.2672162
[2025-11-22 19:33:51] 2025-11-23 00:33:00,415 | INFO     | mean y: 2993098.1978661492
[2025-11-22 19:33:51] 2025-11-23 00:33:00,415 | INFO     | intersect: -2549349859.6969013
[2025-11-22 19:33:51] 2025-11-23 00:33:00,446 | INFO     | chi2: 14.028622185034168
[2025-11-22 19:33:51] 2025-11-23 00:33:00,446 | INFO     | current chi2=14.028622185034168 (change=10.047612669786858 %)
[2025-11-22 19:33:51] 2025-11-23 00:33:00,447 | INFO     | left removable region: 10
[2025-11-22 19:33:51] 2025-11-23 00:33:00,484 | INFO     | sum of square deviations: 2675283997919.4043
[2025-11-22 19:33:51] 2025-11-23 00:33:00,835 | INFO     | monitor loop #6037: job 0:6894239401 is in state 'finished'
[2025-11-22 19:33:51] 2025-11-23 00:33:00,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:33:51] 2025-11-23 00:33:01,529 | INFO     | sum of deviations: 4609161863818.541
[2025-11-22 19:33:51] 2025-11-23 00:33:01,546 | INFO     | mean x: 1763795008.7957094
[2025-11-22 19:33:51] 2025-11-23 00:33:01,546 | INFO     | mean y: 3000772.652852267
[2025-11-22 19:33:51] 2025-11-23 00:33:01,546 | INFO     | intersect: -3035785650.1931553
[2025-11-22 19:33:51] 2025-11-23 00:33:01,549 | INFO     | chi2: 10.351266081147124
[2025-11-22 19:33:51] 2025-11-23 00:33:01,572 | INFO     | current memory leak: 1.72 B/s (using 2051 data points, chi2=10.35)
[2025-11-22 19:33:51] 2025-11-23 00:33:01,575 | INFO     | could have reported an average CPU frequency of 2528 MHz (72 samples)
[2025-11-22 19:33:51] 2025-11-23 00:33:01,575 | INFO     | ..............................
[2025-11-22 19:33:51] 2025-11-23 00:33:01,575 | INFO     | . Timing measurements:
[2025-11-22 19:33:51] 2025-11-23 00:33:01,599 | INFO     | . get job = 0 s
[2025-11-22 19:33:51] 2025-11-23 00:33:01,599 | INFO     | . initial setup = 0 s
[2025-11-22 19:33:51] 2025-11-23 00:33:01,599 | INFO     | . payload setup = 7 s
[2025-11-22 19:33:51] 2025-11-23 00:33:01,599 | INFO     | . stage-in = 0 s
[2025-11-22 19:33:51] 2025-11-23 00:33:01,599 | INFO     | . payload execution = 126062 s
[2025-11-22 19:33:51] 2025-11-23 00:33:01,599 | INFO     | . stage-out = 13 s
[2025-11-22 19:33:51] 2025-11-23 00:33:01,599 | INFO     | . log creation = 4 s
[2025-11-22 19:33:51] 2025-11-23 00:33:01,599 | INFO     | ..............................
[2025-11-22 19:33:51] 2025-11-23 00:33:02,122 | INFO     | time since job start (126142s) is within the limit (172800.0s)
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | 
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | job summary report
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | --------------------------------------------------
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | PanDA job id: 6894239401
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | task id: 47533967
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | errors: (none)
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | pilot state: finished 
[2025-11-22 19:33:51] 2025-11-23 00:33:02,919 | INFO     | transexitcode: 0
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | exeerrorcode: 0
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | exeerrordiag: 
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | exitcode: 0
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | exitmsg: OK
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | cpuconsumptiontime: 273188 s
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | nevents: 1000
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | neventsw: 0
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | pid: 128465
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | pgrp: 128465
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | corecount: 8
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | event service: False
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | sizes: {0: 2298755, 5: 2299017, 11: 2299073, 126075: 2379562, 126076: 2379561, 126090: 2388613, 126091: 2388797, 126127: 2389043}
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | --------------------------------------------------
[2025-11-22 19:33:51] 2025-11-23 00:33:02,920 | INFO     | 
[2025-11-22 19:33:51] 2025-11-23 00:33:02,921 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-11-22 19:33:51] 2025-11-23 00:33:03,062 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,068 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,072 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,075 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,077 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,085 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,085 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,085 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,090 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:33:51] 2025-11-23 00:33:03,091 | INFO     | job 6894239401 has completed (purged errors)
[2025-11-22 19:33:51] 2025-11-23 00:33:03,091 | INFO     | overall cleanup function is called
[2025-11-22 19:33:51] 2025-11-23 00:33:04,165 | INFO     | --- collectZombieJob: --- 10, [128465]
[2025-11-22 19:33:51] 2025-11-23 00:33:04,165 | INFO     | zombie collector waiting for pid 128465
[2025-11-22 19:33:51] 2025-11-23 00:33:04,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:33:51] 2025-11-23 00:33:04,165 | INFO     | collected zombie processes
[2025-11-22 19:33:51] 2025-11-23 00:33:04,165 | INFO     | will attempt to kill all subprocesses of pid=128465
[2025-11-22 19:33:51] 2025-11-23 00:33:06,264 | INFO     | process IDs to be killed: [128465] (in reverse order)
[2025-11-22 19:33:51] 2025-11-23 00:33:06,767 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:33:51] 2025-11-23 00:33:06,769 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:33:51] 2025-11-23 00:33:06,844 | INFO     | did not find any defunct processes belonging to 128465
[2025-11-22 19:33:51] 2025-11-23 00:33:07,016 | INFO     | did not find any defunct processes belonging to 128465
[2025-11-22 19:33:51] 2025-11-23 00:33:07,045 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:33:51] 2025-11-23 00:33:07,045 | INFO     | ready for new job
[2025-11-22 19:33:51] 2025-11-23 00:33:07,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:33:51] 2025-11-23 00:33:07,056 | INFO     | ***************************************
[2025-11-22 19:33:51] 2025-11-23 00:33:07,056 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:33:51] 2025-11-23 00:33:07,056 | INFO     | ***************************************
[2025-11-22 19:33:51] 2025-11-23 00:33:07,056 | INFO     | 
[2025-11-22 19:33:51] 2025-11-23 00:33:07,071 | INFO     | architecture information:
[2025-11-22 19:33:51] 2025-11-23 00:33:07,083 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:33:51] 2025-11-23 00:33:07,169 | INFO     | cat /etc/os-release:
[2025-11-22 19:33:51] NAME="CentOS Linux"
[2025-11-22 19:33:51] VERSION="7 (Core)"
[2025-11-22 19:33:51] ID="centos"
[2025-11-22 19:33:51] ID_LIKE="rhel fedora"
[2025-11-22 19:33:51] VERSION_ID="7"
[2025-11-22 19:33:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:33:51] ANSI_COLOR="0;31"
[2025-11-22 19:33:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:33:51] HOME_URL="https://www.centos.org/"
[2025-11-22 19:33:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:33:51] 
[2025-11-22 19:33:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:33:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:33:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:33:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:33:51] 
[2025-11-22 19:33:51] 2025-11-23 00:33:07,170 | INFO     | ***************************************
[2025-11-22 19:33:51] 2025-11-23 00:33:07,673 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-11-22 19:33:51] 2025-11-23 00:33:07,785 | INFO     | sufficient remaining disk space (400708075520 B)
[2025-11-22 19:33:51] 2025-11-23 00:33:07,786 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:33:51] 2025-11-23 00:33:07,786 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:33:51] 2025-11-23 00:33:07,786 | INFO     | update_server=False
[2025-11-22 19:33:51] 2025-11-23 00:33:07,786 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:33:51] 2025-11-23 00:33:07,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:33:51] 2025-11-23 00:33:07,804 | INFO     | aborting loop
[2025-11-22 19:33:51] 2025-11-23 00:33:07,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:33:51] 2025-11-23 00:33:07,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:33:51] 2025-11-23 00:33:08,372 | INFO     | all data control threads have been joined
[2025-11-22 19:33:51] 2025-11-23 00:33:08,810 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:08,816 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:08,816 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:08,835 | INFO     | all payload control threads have been joined
[2025-11-22 19:33:51] 2025-11-23 00:33:09,011 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,127 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,378 | INFO     | [data] control thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,394 | INFO     | all job control threads have been joined
[2025-11-22 19:33:51] 2025-11-23 00:33:09,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:33:51] 2025-11-23 00:33:09,494 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,526 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,526 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,574 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,754 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,812 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:09,846 | INFO     | [payload] control thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:10,116 | INFO     | [job] validate thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:10,406 | INFO     | [job] control thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:13,459 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:33:51] 2025-11-23 00:33:37,870 | INFO     | PID=51245 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 19:33:51] 2025-11-23 00:33:37,870 | INFO     | .. there are 70 such processes running
[2025-11-22 19:33:51] 2025-11-23 00:33:37,871 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:33:51] 2025-11-23 00:33:37,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:33:51] 2025-11-23 00:33:37,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:33:51] 2025-11-23 00:33:44,937 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:33:51] 2025-11-23 00:33:45,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139869318698816)>', '<ExcThread(monitor, started 139868696999680)>']
[2025-11-22 19:33:51] 2025-11-23 00:33:45,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:33:51] 2025-11-23 00:33:45,928 | INFO     | [monitor] control thread has ended
[2025-11-22 19:33:51] 2025-11-23 00:33:50,706 | INFO     | all workflow threads have been joined
[2025-11-22 19:33:51] 2025-11-23 00:33:50,706 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:33:51] 2025-11-23 00:33:50,707 | INFO     | traces error code: 0
[2025-11-22 19:33:51] 2025-11-23 00:33:50,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:33:51] 2025-11-23 00:33:51,050 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:33:51] 2025-11-23 00:33:51,055 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:33:51] 2025-11-23 00:33:51,058 [wrapper] pilotpid: 51245
[2025-11-22 19:33:51] 2025-11-23 00:33:51,060 [wrapper] Pilot exit status: 0
[2025-11-22 19:33:51] 2025-11-23 00:33:51,101 [wrapper] pandaids: 6894239401 6894239401
[2025-11-22 19:33:51] 2025-11-23 00:33:51,228 [wrapper] cleanup supervisor_pilot 1373887 51246
[2025-11-22 19:33:51] 2025-11-23 00:33:51,235 [wrapper] Test setup, not cleaning
[2025-11-22 19:33:51] 2025-11-23 00:33:51,243 [wrapper] apfmon messages muted
[2025-11-22 19:33:51] 2025-11-23 00:33:51,275 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:33:51] 2025-11-23 00:33:51,313 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:33:51]  *** Error codes and diagnostics ***
[2025-11-22 19:33:51]     "exeErrorCode": 0,
[2025-11-22 19:33:51]     "exeErrorDiag": "",
[2025-11-22 19:33:51]     "pilotErrorCode": 0,
[2025-11-22 19:33:51]     "pilotErrorDiag": "",
[2025-11-22 19:33:51]  *** Listing of results directory ***
[2025-11-22 19:33:51] total 1725752
[2025-11-22 19:33:51] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 19:06 pilot3.tar.gz
[2025-11-22 19:33:51] -rwx------. 1 boincer umatlas     36292 Nov 20 19:38 runpilot2-wrapper.sh
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 19:38 queuedata.json
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas       100 Nov 21 07:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:33:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 07:38 run_atlas
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas       105 Nov 21 07:38 job.xml
[2025-11-22 19:33:51] -rw-r--r--. 3 boincer umatlas 408693068 Nov 21 07:38 EVNT.47493127._002049.pool.root.1
[2025-11-22 19:33:51] -rw-r--r--. 3 boincer umatlas 408693068 Nov 21 07:38 ATLAS.root_0
[2025-11-22 19:33:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:38 start_atlas.sh
[2025-11-22 19:33:51] drwxrwx--x. 2 boincer umatlas        68 Nov 21 07:38 shared
[2025-11-22 19:33:51] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 07:38 input.tar.gz
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas         0 Nov 21 07:38 boinc_lockfile
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 08:30 pandaJob.out
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas    989817 Nov 21 08:30 agis_schedconf.cvmfs.json
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas       533 Nov 22 18:54 boinc_task_state.xml
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas      6796 Nov 22 19:30 init_data.xml
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas 912916039 Nov 22 19:30 HITS.47533967._000204.pool.root.1
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas      1070 Nov 22 19:32 memory_monitor_summary.json
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas   1526164 Nov 22 19:32 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas   2732179 Nov 22 19:32 log.47533967._000204.job.log.tgz.1
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas      8651 Nov 22 19:33 heartbeat.json
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas        97 Nov 22 19:33 pilot_heartbeat.json
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas      4824 Nov 22 19:33 pilotlog.txt
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas  13746166 Nov 22 19:33 log.47533967._000204.job.log.1
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas       353 Nov 22 19:33 output.list
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas       620 Nov 22 19:33 runtime_log
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas  16496640 Nov 22 19:33 result.tar.gz
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas      8915 Nov 22 19:33 runtime_log.err
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas       791 Nov 22 19:33 dmfLDmNLUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6jIKDmO02cOm.diag
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 19:33 boinc_mmap_file
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas        29 Nov 22 19:33 wrapper_checkpoint.txt
[2025-11-22 19:33:51] -rw-r--r--. 1 boincer umatlas     23917 Nov 22 19:33 stderr.txt
[2025-11-22 19:33:51] HITS file was successfully produced:
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas 912916039 Nov 22 19:30 shared/HITS.pool.root.1
[2025-11-22 19:33:51]  *** Contents of shared directory: ***
[2025-11-22 19:33:51] total 1307344
[2025-11-22 19:33:51] -rw-r--r--. 3 boincer umatlas 408693068 Nov 21 07:38 ATLAS.root_0
[2025-11-22 19:33:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:38 start_atlas.sh
[2025-11-22 19:33:51] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 07:38 input.tar.gz
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas 912916039 Nov 22 19:30 HITS.pool.root.1
[2025-11-22 19:33:51] -rw-------. 1 boincer umatlas  16496640 Nov 22 19:33 result.tar.gz
19:33:53 (4270): run_atlas exited; CPU time 278850.706681
19:33:53 (4270): called boinc_finish(0)

</stderr_txt>
]]>

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