Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:28:24 (23184): wrapper (7.7.26015): starting
07:28:24 (23184): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 07:28:24] Arguments: --nthreads 8
[2025-11-21 07:28:24] Threads: 8
[2025-11-21 07:28:24] Checking for CVMFS
[2025-11-21 07:28:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:28:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:28:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:28:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:28:25] 2.13.2.0 4359 26532 273996 153124 3 362 38823799 40960001 6751 16776704 0 31120012 99.543 35245831 27317 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 07:28:25] CVMFS is ok
[2025-11-21 07:28:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:28:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:28:25] Further information can be found at the LHC@home message board.
[2025-11-21 07:28:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:28:25] Checking for apptainer binary...
[2025-11-21 07:28:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:28:25] Running /usr/bin/apptainer --version
[2025-11-21 07:28:25] apptainer version 1.4.4-1.el9
[2025-11-21 07:28:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:28:25] c-211-14.aglt2.org
[2025-11-21 07:28:25] apptainer works
[2025-11-21 07:28:25] Set ATHENA_PROC_NUMBER=8
[2025-11-21 07:28:25] Set ATHENA_CORE_NUMBER=8
[2025-11-21 07:28:25] Starting ATLAS job with PandaID=6893876822
[2025-11-21 07:28:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:11:37]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:11:37] 2025-11-23 04:10:50,295 | INFO     | time since job start (142926s) is within the limit (172800.0s)
[2025-11-22 23:11:37] 2025-11-23 04:10:50,943 | INFO     | monitor loop #7916: job 0:6893876822 is in state 'finished'
[2025-11-22 23:11:37] 2025-11-23 04:10:50,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:11:37] 2025-11-23 04:10:52,312 | INFO     | time since job start (142928s) is within the limit (172800.0s)
[2025-11-22 23:11:37] 2025-11-23 04:10:53,448 | INFO     | monitor loop #7917: job 0:6893876822 is in state 'finished'
[2025-11-22 23:11:37] 2025-11-23 04:10:53,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:11:37] 2025-11-23 04:10:54,361 | INFO     | time since job start (142930s) is within the limit (172800.0s)
[2025-11-22 23:11:37] 2025-11-23 04:10:55,983 | INFO     | monitor loop #7918: job 0:6893876822 is in state 'finished'
[2025-11-22 23:11:37] 2025-11-23 04:10:55,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:11:37] 2025-11-23 04:10:56,367 | INFO     | time since job start (142932s) is within the limit (172800.0s)
[2025-11-22 23:11:37] 2025-11-23 04:10:58,375 | INFO     | time since job start (142934s) is within the limit (172800.0s)
[2025-11-22 23:11:37] 2025-11-23 04:10:58,494 | INFO     | monitor loop #7919: job 0:6893876822 is in state 'finished'
[2025-11-22 23:11:37] 2025-11-23 04:10:58,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:11:37] 2025-11-23 04:11:00,384 | INFO     | time since job start (142936s) is within the limit (172800.0s)
[2025-11-22 23:11:37] 2025-11-23 04:11:00,921 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:11:37] 2025-11-23 04:11:00,979 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2624.718604166667
[2025-11-22 23:11:37] 2025-11-23 04:11:01,015 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6893876822/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:11:37] 2025-11-23 04:11:01,016 | INFO     | extracted standard info from prmon json
[2025-11-22 23:11:37] 2025-11-23 04:11:01,016 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:11:37] 2025-11-23 04:11:01,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:11:37] 2025-11-23 04:11:01,052 | INFO     | monitor loop #7920: job 0:6893876822 is in state 'finished'
[2025-11-22 23:11:37] 2025-11-23 04:11:01,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:11:37] 2025-11-23 04:11:01,103 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:11:37] 2025-11-23 04:11:01,111 | INFO     | sum of square deviations: 3982899330293.409
[2025-11-22 23:11:37] 2025-11-23 04:11:01,427 | INFO     | sum of deviations: 5258989571077.524
[2025-11-22 23:11:37] 2025-11-23 04:11:01,432 | INFO     | mean x: 1763799571.086678
[2025-11-22 23:11:37] 2025-11-23 04:11:01,432 | INFO     | mean y: 2999017.475234842
[2025-11-22 23:11:37] 2025-11-23 04:11:01,432 | INFO     | intersect: -2325908338.8481617
[2025-11-22 23:11:37] 2025-11-23 04:11:01,435 | INFO     | chi2: 18.917091161741347
[2025-11-22 23:11:37] 2025-11-23 04:11:01,443 | INFO     | sum of square deviations: 3957446525128.518
[2025-11-22 23:11:37] 2025-11-23 04:11:01,758 | INFO     | sum of deviations: 6156795611241.613
[2025-11-22 23:11:37] 2025-11-23 04:11:01,758 | INFO     | mean x: 1763799418.6007702
[2025-11-22 23:11:37] 2025-11-23 04:11:01,758 | INFO     | mean y: 3004395.43046641
[2025-11-22 23:11:37] 2025-11-23 04:11:01,759 | INFO     | intersect: -2741025738.7983403
[2025-11-22 23:11:37] 2025-11-23 04:11:01,761 | INFO     | chi2: 15.117961860577397
[2025-11-22 23:11:37] 2025-11-23 04:11:01,762 | INFO     | current chi2=15.117961860577397 (change=20.083052244562076 %)
[2025-11-22 23:11:37] 2025-11-23 04:11:01,762 | INFO     | right removable region: 2336
[2025-11-22 23:11:37] 2025-11-23 04:11:01,765 | INFO     | sum of square deviations: 3957437257898.72
[2025-11-22 23:11:37] 2025-11-23 04:11:02,374 | INFO     | sum of deviations: 4539719313662.756
[2025-11-22 23:11:37] 2025-11-23 04:11:02,375 | INFO     | mean x: 1763799723.6003423
[2025-11-22 23:11:37] 2025-11-23 04:11:02,375 | INFO     | mean y: 3003323.7963200686
[2025-11-22 23:11:37] 2025-11-23 04:11:02,375 | INFO     | intersect: -2020315088.8152452
[2025-11-22 23:11:37] 2025-11-23 04:11:02,378 | INFO     | chi2: 16.42164041189962
[2025-11-22 23:11:37] 2025-11-23 04:11:02,378 | INFO     | current chi2=16.42164041189962 (change=13.191514110206448 %)
[2025-11-22 23:11:37] 2025-11-23 04:11:02,379 | INFO     | left removable region: 10
[2025-11-22 23:11:37] 2025-11-23 04:11:02,382 | INFO     | sum of square deviations: 3901814256802.27
[2025-11-22 23:11:37] 2025-11-23 04:11:02,410 | INFO     | time since job start (142938s) is within the limit (172800.0s)
[2025-11-22 23:11:37] 2025-11-23 04:11:03,029 | INFO     | sum of deviations: 5355976951712.448
[2025-11-22 23:11:37] 2025-11-23 04:11:03,072 | INFO     | mean x: 1763799693.1306965
[2025-11-22 23:11:37] 2025-11-23 04:11:03,072 | INFO     | mean y: 3011028.9097162513
[2025-11-22 23:11:37] 2025-11-23 04:11:03,072 | INFO     | intersect: -2418137155.5217175
[2025-11-22 23:11:37] 2025-11-23 04:11:03,149 | INFO     | chi2: 11.910854010871162
[2025-11-22 23:11:37] 2025-11-23 04:11:03,149 | INFO     | current memory leak: 1.37 B/s (using 2326 data points, chi2=11.91)
[2025-11-22 23:11:37] 2025-11-23 04:11:03,152 | INFO     | could have reported an average CPU frequency of 2663 MHz (81 samples)
[2025-11-22 23:11:37] 2025-11-23 04:11:03,152 | INFO     | ..............................
[2025-11-22 23:11:37] 2025-11-23 04:11:03,217 | INFO     | . Timing measurements:
[2025-11-22 23:11:37] 2025-11-23 04:11:03,217 | INFO     | . get job = 0 s
[2025-11-22 23:11:37] 2025-11-23 04:11:03,217 | INFO     | . initial setup = 3 s
[2025-11-22 23:11:37] 2025-11-23 04:11:03,217 | INFO     | . payload setup = 11 s
[2025-11-22 23:11:37] 2025-11-23 04:11:03,217 | INFO     | . stage-in = 0 s
[2025-11-22 23:11:37] 2025-11-23 04:11:03,217 | INFO     | . payload execution = 142849 s
[2025-11-22 23:11:37] 2025-11-23 04:11:03,217 | INFO     | . stage-out = 12 s
[2025-11-22 23:11:37] 2025-11-23 04:11:03,218 | INFO     | . log creation = 7 s
[2025-11-22 23:11:37] 2025-11-23 04:11:03,218 | INFO     | ..............................
[2025-11-22 23:11:37] 2025-11-23 04:11:04,307 | INFO     | 
[2025-11-22 23:11:37] 2025-11-23 04:11:04,308 | INFO     | job summary report
[2025-11-22 23:11:37] 2025-11-23 04:11:04,308 | INFO     | --------------------------------------------------
[2025-11-22 23:11:37] 2025-11-23 04:11:04,308 | INFO     | PanDA job id: 6893876822
[2025-11-22 23:11:37] 2025-11-23 04:11:04,308 | INFO     | task id: 47523449
[2025-11-22 23:11:37] 2025-11-23 04:11:04,308 | INFO     | errors: (none)
[2025-11-22 23:11:37] 2025-11-23 04:11:04,308 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | pilot state: finished 
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | transexitcode: 0
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | exeerrorcode: 0
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | exeerrordiag: 
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | exitcode: 0
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | exitmsg: OK
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | cpuconsumptiontime: 336279 s
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | nevents: 1000
[2025-11-22 23:11:37] 2025-11-23 04:11:04,309 | INFO     | neventsw: 0
[2025-11-22 23:11:37] 2025-11-23 04:11:04,310 | INFO     | pid: 43931
[2025-11-22 23:11:37] 2025-11-23 04:11:04,310 | INFO     | pgrp: 43931
[2025-11-22 23:11:37] 2025-11-23 04:11:04,310 | INFO     | corecount: 8
[2025-11-22 23:11:37] 2025-11-23 04:11:04,310 | INFO     | event service: False
[2025-11-22 23:11:37] 2025-11-23 04:11:04,310 | INFO     | sizes: {0: 2298756, 8: 2299018, 11: 2299046, 142863: 2388287, 142864: 2388286, 142879: 2397548, 142919: 2397738}
[2025-11-22 23:11:37] 2025-11-23 04:11:04,310 | INFO     | --------------------------------------------------
[2025-11-22 23:11:37] 2025-11-23 04:11:04,310 | INFO     | 
[2025-11-22 23:11:37] 2025-11-23 04:11:04,310 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-22 23:11:37] 2025-11-23 04:11:04,421 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,421 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,421 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,421 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,423 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,423 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,423 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:11:37] 2025-11-23 04:11:04,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,423 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:11:37] 2025-11-23 04:11:04,424 | INFO     | job 6893876822 has completed (purged errors)
[2025-11-22 23:11:37] 2025-11-23 04:11:04,424 | INFO     | overall cleanup function is called
[2025-11-22 23:11:37] 2025-11-23 04:11:05,465 | INFO     | --- collectZombieJob: --- 10, [43931]
[2025-11-22 23:11:37] 2025-11-23 04:11:05,466 | INFO     | zombie collector waiting for pid 43931
[2025-11-22 23:11:37] 2025-11-23 04:11:05,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:11:37] 2025-11-23 04:11:05,466 | INFO     | collected zombie processes
[2025-11-22 23:11:37] 2025-11-23 04:11:05,466 | INFO     | will attempt to kill all subprocesses of pid=43931
[2025-11-22 23:11:37] 2025-11-23 04:11:06,199 | INFO     | process IDs to be killed: [43931] (in reverse order)
[2025-11-22 23:11:37] 2025-11-23 04:11:06,346 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:11:37] 2025-11-23 04:11:06,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:11:37] 2025-11-23 04:11:06,363 | INFO     | did not find any defunct processes belonging to 43931
[2025-11-22 23:11:37] 2025-11-23 04:11:06,380 | INFO     | did not find any defunct processes belonging to 43931
[2025-11-22 23:11:37] 2025-11-23 04:11:06,384 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:11:37] 2025-11-23 04:11:06,384 | INFO     | ready for new job
[2025-11-22 23:11:37] 2025-11-23 04:11:06,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:11:37] 2025-11-23 04:11:06,399 | INFO     | ***************************************
[2025-11-22 23:11:37] 2025-11-23 04:11:06,399 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:11:37] 2025-11-23 04:11:06,399 | INFO     | ***************************************
[2025-11-22 23:11:37] 2025-11-23 04:11:06,399 | INFO     | 
[2025-11-22 23:11:37] 2025-11-23 04:11:06,404 | INFO     | architecture information:
[2025-11-22 23:11:37] 2025-11-23 04:11:06,406 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:11:37] 2025-11-23 04:11:06,439 | INFO     | cat /etc/os-release:
[2025-11-22 23:11:37] NAME="CentOS Linux"
[2025-11-22 23:11:37] VERSION="7 (Core)"
[2025-11-22 23:11:37] ID="centos"
[2025-11-22 23:11:37] ID_LIKE="rhel fedora"
[2025-11-22 23:11:37] VERSION_ID="7"
[2025-11-22 23:11:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:11:37] ANSI_COLOR="0;31"
[2025-11-22 23:11:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:11:37] HOME_URL="https://www.centos.org/"
[2025-11-22 23:11:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:11:37] 
[2025-11-22 23:11:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:11:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:11:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:11:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:11:37] 
[2025-11-22 23:11:37] 2025-11-23 04:11:06,440 | INFO     | ***************************************
[2025-11-22 23:11:37] 2025-11-23 04:11:06,945 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-22 23:11:37] 2025-11-23 04:11:06,986 | INFO     | sufficient remaining disk space (60130590720 B)
[2025-11-22 23:11:37] 2025-11-23 04:11:06,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:11:37] 2025-11-23 04:11:06,987 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:11:37] 2025-11-23 04:11:06,987 | INFO     | update_server=False
[2025-11-22 23:11:37] 2025-11-23 04:11:06,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:11:37] 2025-11-23 04:11:06,987 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:11:37] 2025-11-23 04:11:07,163 | INFO     | all data control threads have been joined
[2025-11-22 23:11:37] 2025-11-23 04:11:07,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:11:37] 2025-11-23 04:11:07,250 | INFO     | all payload control threads have been joined
[2025-11-22 23:11:37] 2025-11-23 04:11:07,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:11:37] 2025-11-23 04:11:07,262 | INFO     | aborting loop
[2025-11-22 23:11:37] 2025-11-23 04:11:07,993 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,112 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,123 | INFO     | all job control threads have been joined
[2025-11-22 23:11:37] 2025-11-23 04:11:08,170 | INFO     | [data] control thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,257 | INFO     | [payload] control thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,261 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,261 | INFO     | [job] validate thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,269 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,321 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,429 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,885 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:08,897 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:09,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:11:37] 2025-11-23 04:11:09,130 | INFO     | [job] control thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:09,220 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:09,429 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:10,115 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:11,005 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:11:37] 2025-11-23 04:11:18,615 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:11:37] 2025-11-23 04:11:19,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652590696256)>', '<ExcThread(monitor, started 139652228949760)>']
[2025-11-22 23:11:37] 2025-11-23 04:11:24,888 | INFO     | all workflow threads have been joined
[2025-11-22 23:11:37] 2025-11-23 04:11:24,889 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:11:37] 2025-11-23 04:11:24,904 | INFO     | traces error code: 0
[2025-11-22 23:11:37] 2025-11-23 04:11:24,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:11:37] 2025-11-23 04:11:36,419 | INFO     | PID=30203 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 23:11:37] 2025-11-23 04:11:36,419 | INFO     | .. there are 16 such processes running
[2025-11-22 23:11:37] 2025-11-23 04:11:36,420 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:11:37] 2025-11-23 04:11:36,420 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:11:37] 2025-11-23 04:11:36,425 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:11:37] 2025-11-23 04:11:36,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:11:37] 2025-11-23 04:11:36,425 | INFO     | [monitor] control thread has ended
[2025-11-22 23:11:37] 2025-11-23 04:11:36,932 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:11:37] 2025-11-23 04:11:36,951 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:11:37] 2025-11-23 04:11:36,966 [wrapper] pilotpid: 30203
[2025-11-22 23:11:37] 2025-11-23 04:11:36,996 [wrapper] Pilot exit status: 0
[2025-11-22 23:11:37] 2025-11-23 04:11:37,160 [wrapper] pandaids: 6893876822
[2025-11-22 23:11:37] 2025-11-23 04:11:37,308 [wrapper] cleanup supervisor_pilot 3967170 30204
[2025-11-22 23:11:37] 2025-11-23 04:11:37,324 [wrapper] Test setup, not cleaning
[2025-11-22 23:11:37] 2025-11-23 04:11:37,351 [wrapper] apfmon messages muted
[2025-11-22 23:11:37] 2025-11-23 04:11:37,369 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:11:37] 2025-11-23 04:11:37,385 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:11:37]  *** Error codes and diagnostics ***
[2025-11-22 23:11:37]     "exeErrorCode": 0,
[2025-11-22 23:11:37]     "exeErrorDiag": "",
[2025-11-22 23:11:37]     "pilotErrorCode": 0,
[2025-11-22 23:11:37]     "pilotErrorDiag": "",
[2025-11-22 23:11:37]  *** Listing of results directory ***
[2025-11-22 23:11:37] total 1329308
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:21 pilot3.tar.gz
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 12:51 queuedata.json
[2025-11-22 23:11:37] -rwx------. 1 boincer umatlas     36292 Nov 20 12:52 runpilot2-wrapper.sh
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas       100 Nov 21 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:11:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 07:28 run_atlas
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas       105 Nov 21 07:28 job.xml
[2025-11-22 23:11:37] -rw-r--r--. 2 boincer umatlas 407809221 Nov 21 07:28 EVNT.47493127._000776.pool.root.1
[2025-11-22 23:11:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:28 start_atlas.sh
[2025-11-22 23:11:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 07:28 shared
[2025-11-22 23:11:37] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 07:28 input.tar.gz
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas         0 Nov 21 07:28 boinc_lockfile
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 07:28 pandaJob.out
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas        57 Nov 21 07:28 setup.sh.local
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas    989817 Nov 21 07:28 agis_schedconf.cvmfs.json
[2025-11-22 23:11:37] drwx------. 5 boincer umatlas      4096 Nov 21 07:28 pilot3
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas       533 Nov 22 22:04 boinc_task_state.xml
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas 909354070 Nov 22 23:06 HITS.47523449._007753.pool.root.1
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas      1059 Nov 22 23:10 memory_monitor_summary.json
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas   1526164 Nov 22 23:10 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas   3030315 Nov 22 23:10 log.47523449._007753.job.log.tgz.1
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas      8624 Nov 22 23:11 heartbeat.json
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas      6617 Nov 22 23:11 init_data.xml
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 23:11 boinc_mmap_file
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas        29 Nov 22 23:11 wrapper_checkpoint.txt
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas        95 Nov 22 23:11 pilot_heartbeat.json
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas       821 Nov 22 23:11 pilotlog.txt
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas  17033905 Nov 22 23:11 log.47523449._007753.job.log.1
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas       353 Nov 22 23:11 output.list
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas       620 Nov 22 23:11 runtime_log
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas  20080640 Nov 22 23:11 result.tar.gz
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas      9344 Nov 22 23:11 runtime_log.err
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas       664 Nov 22 23:11 BYuNDmg0Ng8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQNIKDme37DRn.diag
[2025-11-22 23:11:37] -rw-r--r--. 1 boincer umatlas     21501 Nov 22 23:11 stderr.txt
[2025-11-22 23:11:37] HITS file was successfully produced:
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas 909354070 Nov 22 23:06 shared/HITS.pool.root.1
[2025-11-22 23:11:37]  *** Contents of shared directory: ***
[2025-11-22 23:11:37] total 1306512
[2025-11-22 23:11:37] -rw-r--r--. 2 boincer umatlas 407809221 Nov 21 07:28 ATLAS.root_0
[2025-11-22 23:11:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:28 start_atlas.sh
[2025-11-22 23:11:37] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 07:28 input.tar.gz
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas 909354070 Nov 22 23:06 HITS.pool.root.1
[2025-11-22 23:11:37] -rw-------. 1 boincer umatlas  20080640 Nov 22 23:11 result.tar.gz
23:11:39 (23184): run_atlas exited; CPU time 339623.774799
23:11:39 (23184): called boinc_finish(0)

</stderr_txt>
]]>

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