Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:12 (3201605): wrapper (7.7.26015): starting
10:02:12 (3201605): wrapper: running run_atlas (--nthreads 2)
[2025-11-24 10:02:12] Arguments: --nthreads 2
[2025-11-24 10:02:12] Threads: 2
[2025-11-24 10:02:12] Checking for CVMFS
[2025-11-24 10:02:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:02:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:02:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:02:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:02:13] 2.9.2.0 2254411 8176 59744 153239 2 81 35929361 36864001 0 130560 0 2615207 99.909 449169 5956 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 10:02:13] CVMFS is ok
[2025-11-24 10:02:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:02:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:02:13] Further information can be found at the LHC@home message board.
[2025-11-24 10:02:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:02:13] Checking for apptainer binary...
[2025-11-24 10:02:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:02:13] Running /usr/bin/apptainer --version
[2025-11-24 10:02:13] apptainer version 1.4.1-1.1
[2025-11-24 10:02:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:02:13] thA331
[2025-11-24 10:02:13] apptainer works
[2025-11-24 10:02:13] Set ATHENA_PROC_NUMBER=2
[2025-11-24 10:02:13] Set ATHENA_CORE_NUMBER=2
[2025-11-24 10:02:13] Starting ATLAS job with PandaID=6891569905
[2025-11-24 10:02:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:22:36]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:22:36] 2025-11-24 21:22:05,321 | INFO     | zombie collector waiting for pid 3211740
[2025-11-24 22:22:36] 2025-11-24 21:22:05,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:22:36] 2025-11-24 21:22:05,321 | INFO     | collected zombie processes
[2025-11-24 22:22:36] 2025-11-24 21:22:05,322 | INFO     | will attempt to kill all subprocesses of pid=3211740
[2025-11-24 22:22:36] 2025-11-24 21:22:05,355 | INFO     | process IDs to be killed: [3211740] (in reverse order)
[2025-11-24 22:22:36] 2025-11-24 21:22:05,376 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:22:36] 2025-11-24 21:22:05,376 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:22:36] 2025-11-24 21:22:05,376 | INFO     | did not find any defunct processes belonging to 3211740
[2025-11-24 22:22:36] 2025-11-24 21:22:05,377 | INFO     | did not find any defunct processes belonging to 3211740
[2025-11-24 22:22:36] 2025-11-24 21:22:05,378 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:22:36] 2025-11-24 21:22:05,378 | INFO     | ready for new job
[2025-11-24 22:22:36] 2025-11-24 21:22:05,378 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:22:36] 2025-11-24 21:22:05,379 | INFO     | ***************************************
[2025-11-24 22:22:36] 2025-11-24 21:22:05,379 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:22:36] 2025-11-24 21:22:05,379 | INFO     | ***************************************
[2025-11-24 22:22:36] 2025-11-24 21:22:05,379 | INFO     | 
[2025-11-24 22:22:36] 2025-11-24 21:22:05,379 | INFO     | architecture information:
[2025-11-24 22:22:36] 2025-11-24 21:22:05,380 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:22:36] 2025-11-24 21:22:05,387 | INFO     | cat /etc/os-release:
[2025-11-24 22:22:36] NAME="CentOS Linux"
[2025-11-24 22:22:36] VERSION="7 (Core)"
[2025-11-24 22:22:36] ID="centos"
[2025-11-24 22:22:36] ID_LIKE="rhel fedora"
[2025-11-24 22:22:36] VERSION_ID="7"
[2025-11-24 22:22:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:22:36] ANSI_COLOR="0;31"
[2025-11-24 22:22:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:22:36] HOME_URL="https://www.centos.org/"
[2025-11-24 22:22:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:22:36] 
[2025-11-24 22:22:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:22:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:22:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:22:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:22:36] 
[2025-11-24 22:22:36] 2025-11-24 21:22:05,387 | INFO     | ***************************************
[2025-11-24 22:22:36] 2025-11-24 21:22:05,891 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | INFO     | sufficient remaining disk space (221536845824 B)
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | INFO     | update_server=False
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | INFO     | aborting loop
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:22:36] 2025-11-24 21:22:05,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:22:36] 2025-11-24 21:22:06,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:22:36] 2025-11-24 21:22:06,909 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:06,909 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:06,910 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:06,918 | INFO     | all data control threads have been joined
[2025-11-24 22:22:36] 2025-11-24 21:22:06,963 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:06,969 | INFO     | all job control threads have been joined
[2025-11-24 22:22:36] 2025-11-24 21:22:07,019 | INFO     | all payload control threads have been joined
[2025-11-24 22:22:36] 2025-11-24 21:22:07,259 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:07,533 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:07,832 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:07,866 | INFO     | [job] validate thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:07,904 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:07,909 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:07,912 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:07,923 | INFO     | [data] control thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:07,974 | INFO     | [job] control thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:08,024 | INFO     | [payload] control thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:08,110 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:10,088 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:22:36] 2025-11-24 21:22:29,912 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:22:36] 2025-11-24 21:22:30,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140303721948992)>', '<ExcThread(monitor, started 140303059105536)>']
[2025-11-24 22:22:36] 2025-11-24 21:22:35,085 | INFO     | all workflow threads have been joined
[2025-11-24 22:22:36] 2025-11-24 21:22:35,086 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:22:36] 2025-11-24 21:22:35,087 | INFO     | traces error code: 0
[2025-11-24 22:22:36] 2025-11-24 21:22:35,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:22:36] 2025-11-24 21:22:36,841 | INFO     | PID=3205317 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 22:22:36] 2025-11-24 21:22:36,841 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:22:36] 2025-11-24 21:22:36,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:22:36] 2025-11-24 21:22:36,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:22:36] 2025-11-24 21:22:36,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:22:36] 2025-11-24 21:22:36,841 | INFO     | [monitor] control thread has ended
[2025-11-24 22:22:36] 2025-11-24 21:22:36,881 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:22:36] 2025-11-24 21:22:36,884 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:22:36] 2025-11-24 21:22:36,886 [wrapper] pilotpid: 3205317
[2025-11-24 22:22:36] 2025-11-24 21:22:36,888 [wrapper] Pilot exit status: 0
[2025-11-24 22:22:36] 2025-11-24 21:22:36,894 [wrapper] pandaids: 6891569905
[2025-11-24 22:22:36] 2025-11-24 21:22:36,907 [wrapper] cleanup supervisor_pilot 3286362 3205318
[2025-11-24 22:22:36] 2025-11-24 21:22:36,909 [wrapper] Test setup, not cleaning
[2025-11-24 22:22:36] 2025-11-24 21:22:36,911 [wrapper] apfmon messages muted
[2025-11-24 22:22:36] 2025-11-24 21:22:36,913 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:22:36] 2025-11-24 21:22:36,915 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:22:36]  *** Error codes and diagnostics ***
[2025-11-24 22:22:36]     "exeErrorCode": 0,
[2025-11-24 22:22:36]     "exeErrorDiag": "",
[2025-11-24 22:22:36]     "pilotErrorCode": 0,
[2025-11-24 22:22:36]     "pilotErrorDiag": "",
[2025-11-24 22:22:36]  *** Listing of results directory ***
[2025-11-24 22:22:36] total 1302716
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:35 queuedata.json
[2025-11-24 22:22:36] -rwx------ 1 boinc boinc     36292 Nov 18 16:37 runpilot2-wrapper.sh
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc       100 Nov 24 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:22:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 10:02 run_atlas
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc       105 Nov 24 10:02 job.xml
[2025-11-24 22:22:36] -rw-r--r-- 2 boinc boinc 406655616 Nov 24 10:02 EVNT.47493065._000221.pool.root.1
[2025-11-24 22:22:36] -rw-r--r-- 2 boinc boinc    590102 Nov 24 10:02 input.tar.gz
[2025-11-24 22:22:36] -rw-r--r-- 2 boinc boinc     15120 Nov 24 10:02 start_atlas.sh
[2025-11-24 22:22:36] drwxrwx--x 2 boinc boinc      4096 Nov 24 10:02 shared
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc         0 Nov 24 10:02 boinc_setup_complete
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc      6206 Nov 24 10:02 init_data.xml
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc         0 Nov 24 10:02 boinc_lockfile
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc      2773 Nov 24 10:02 pandaJob.out
[2025-11-24 22:22:36] -rw------- 1 boinc boinc    989794 Nov 24 10:02 agis_schedconf.cvmfs.json
[2025-11-24 22:22:36] drwx------ 5 boinc boinc      4096 Nov 24 10:02 pilot3
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc       531 Nov 24 22:18 boinc_task_state.xml
[2025-11-24 22:22:36] -rw------- 1 boinc boinc 908513525 Nov 24 22:21 HITS.47493068._002206.pool.root.1
[2025-11-24 22:22:36] -rw------- 1 boinc boinc      1022 Nov 24 22:21 memory_monitor_summary.json
[2025-11-24 22:22:36] -rw------- 1 boinc boinc   1516227 Nov 24 22:21 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:22:36] -rw------- 1 boinc boinc   1226243 Nov 24 22:21 log.47493068._002206.job.log.tgz.1
[2025-11-24 22:22:36] -rw------- 1 boinc boinc      8558 Nov 24 22:22 heartbeat.json
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc      8192 Nov 24 22:22 boinc_mmap_file
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc        28 Nov 24 22:22 wrapper_checkpoint.txt
[2025-11-24 22:22:36] -rw------- 1 boinc boinc       747 Nov 24 22:22 pilotlog.txt
[2025-11-24 22:22:36] -rw------- 1 boinc boinc        95 Nov 24 22:22 pilot_heartbeat.json
[2025-11-24 22:22:36] -rw------- 1 boinc boinc   6226219 Nov 24 22:22 log.47493068._002206.job.log.1
[2025-11-24 22:22:36] -rw------- 1 boinc boinc       353 Nov 24 22:22 output.list
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc       620 Nov 24 22:22 runtime_log
[2025-11-24 22:22:36] -rw------- 1 boinc boinc   7475200 Nov 24 22:22 result.tar.gz
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc      8778 Nov 24 22:22 runtime_log.err
[2025-11-24 22:22:36] -rw------- 1 boinc boinc       666 Nov 24 22:22 R6qNDmnwcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqMFKDmx1W0tn.diag
[2025-11-24 22:22:36] -rw-r--r-- 1 boinc boinc     10738 Nov 24 22:22 stderr.txt
[2025-11-24 22:22:36] HITS file was successfully produced:
[2025-11-24 22:22:36] -rw------- 1 boinc boinc 908513525 Nov 24 22:21 shared/HITS.pool.root.1
[2025-11-24 22:22:36]  *** Contents of shared directory: ***
[2025-11-24 22:22:36] total 1292256
[2025-11-24 22:22:36] -rw-r--r-- 2 boinc boinc 406655616 Nov 24 10:02 ATLAS.root_0
[2025-11-24 22:22:36] -rw-r--r-- 2 boinc boinc    590102 Nov 24 10:02 input.tar.gz
[2025-11-24 22:22:36] -rw-r--r-- 2 boinc boinc     15120 Nov 24 10:02 start_atlas.sh
[2025-11-24 22:22:36] -rw------- 1 boinc boinc 908513525 Nov 24 22:21 HITS.pool.root.1
[2025-11-24 22:22:36] -rw------- 1 boinc boinc   7475200 Nov 24 22:22 result.tar.gz
22:22:38 (3201605): run_atlas exited; CPU time 88030.050962
22:22:38 (3201605): called boinc_finish(0)

</stderr_txt>
]]>

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