Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:54:01 (1443285): wrapper (7.7.26015): starting
22:54:01 (1443285): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 22:54:01] Arguments: --nthreads 3
[2025-11-26 22:54:01] Threads: 3
[2025-11-26 22:54:01] Checking for CVMFS
[2025-11-26 22:54:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:54:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:54:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:54:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:54:01] 2.9.2.0 3963118 11765 85776 153335 3 81 9682118 36864000 0 130560 0 4366955 99.871 687522 5198 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 22:54:01] CVMFS is ok
[2025-11-26 22:54:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:54:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:54:01] Further information can be found at the LHC@home message board.
[2025-11-26 22:54:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:54:01] Checking for apptainer binary...
[2025-11-26 22:54:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:54:01] Running /usr/bin/apptainer --version
[2025-11-26 22:54:01] apptainer version 1.4.1-1.1
[2025-11-26 22:54:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:54:01] thA312
[2025-11-26 22:54:01] apptainer works
[2025-11-26 22:54:01] Set ATHENA_PROC_NUMBER=3
[2025-11-26 22:54:01] Set ATHENA_CORE_NUMBER=3
[2025-11-26 22:54:01] Starting ATLAS job with PandaID=6891592051
[2025-11-26 22:54:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:08:47]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:08:47] 2025-11-27 06:08:11,779 | INFO     | will attempt to kill all subprocesses of pid=1453453
[2025-11-27 07:08:47] 2025-11-27 06:08:11,830 | INFO     | process IDs to be killed: [1453453] (in reverse order)
[2025-11-27 07:08:47] 2025-11-27 06:08:11,857 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:08:47] 2025-11-27 06:08:11,857 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:08:47] 2025-11-27 06:08:11,859 | INFO     | did not find any defunct processes belonging to 1453453
[2025-11-27 07:08:47] 2025-11-27 06:08:11,860 | INFO     | did not find any defunct processes belonging to 1453453
[2025-11-27 07:08:47] 2025-11-27 06:08:11,860 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:08:47] 2025-11-27 06:08:11,860 | INFO     | ready for new job
[2025-11-27 07:08:47] 2025-11-27 06:08:11,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:08:47] 2025-11-27 06:08:11,862 | INFO     | ***************************************
[2025-11-27 07:08:47] 2025-11-27 06:08:11,862 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:08:47] 2025-11-27 06:08:11,862 | INFO     | ***************************************
[2025-11-27 07:08:47] 2025-11-27 06:08:11,862 | INFO     | 
[2025-11-27 07:08:47] 2025-11-27 06:08:11,862 | INFO     | architecture information:
[2025-11-27 07:08:47] 2025-11-27 06:08:11,862 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:08:47] 2025-11-27 06:08:11,872 | INFO     | cat /etc/os-release:
[2025-11-27 07:08:47] NAME="CentOS Linux"
[2025-11-27 07:08:47] VERSION="7 (Core)"
[2025-11-27 07:08:47] ID="centos"
[2025-11-27 07:08:47] ID_LIKE="rhel fedora"
[2025-11-27 07:08:47] VERSION_ID="7"
[2025-11-27 07:08:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:08:47] ANSI_COLOR="0;31"
[2025-11-27 07:08:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:08:47] HOME_URL="https://www.centos.org/"
[2025-11-27 07:08:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:08:47] 
[2025-11-27 07:08:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:08:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:08:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:08:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:08:47] 
[2025-11-27 07:08:47] 2025-11-27 06:08:11,872 | INFO     | ***************************************
[2025-11-27 07:08:47] 2025-11-27 06:08:12,376 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 07:08:47] 2025-11-27 06:08:12,388 | INFO     | sufficient remaining disk space (344221286400 B)
[2025-11-27 07:08:47] 2025-11-27 06:08:12,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:08:47] 2025-11-27 06:08:12,389 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:08:47] 2025-11-27 06:08:12,389 | INFO     | update_server=False
[2025-11-27 07:08:47] 2025-11-27 06:08:12,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:08:47] 2025-11-27 06:08:12,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:08:47] 2025-11-27 06:08:12,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:08:47] 2025-11-27 06:08:12,389 | INFO     | aborting loop
[2025-11-27 07:08:47] 2025-11-27 06:08:12,492 | INFO     | all data control threads have been joined
[2025-11-27 07:08:47] 2025-11-27 06:08:12,623 | INFO     | all payload control threads have been joined
[2025-11-27 07:08:47] 2025-11-27 06:08:13,074 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:08:47] 2025-11-27 06:08:13,394 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:13,394 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:13,395 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:13,446 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:13,498 | INFO     | [data] control thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:13,629 | INFO     | [payload] control thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:13,700 | INFO     | all job control threads have been joined
[2025-11-27 07:08:47] 2025-11-27 06:08:13,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:08:47] 2025-11-27 06:08:13,822 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:13,822 | INFO     | [job] validate thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:13,823 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:14,067 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:14,700 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:14,705 | INFO     | [job] control thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:14,933 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:15,774 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:17,080 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:23,319 | INFO     | job.realtimelogging is not enabled
[2025-11-27 07:08:47] 2025-11-27 06:08:24,324 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:08:47] 2025-11-27 06:08:40,873 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:08:47] 2025-11-27 06:08:41,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140709186074432)>', '<ExcThread(monitor, started 140708912535296)>']
[2025-11-27 07:08:47] 2025-11-27 06:08:43,441 | INFO     | PID=1447005 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:08:47] 2025-11-27 06:08:43,442 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:08:47] 2025-11-27 06:08:43,442 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:08:47] 2025-11-27 06:08:43,442 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:08:47] 2025-11-27 06:08:43,442 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:08:47] 2025-11-27 06:08:43,442 | INFO     | [monitor] control thread has ended
[2025-11-27 07:08:47] 2025-11-27 06:08:46,880 | INFO     | all workflow threads have been joined
[2025-11-27 07:08:47] 2025-11-27 06:08:46,880 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:08:47] 2025-11-27 06:08:46,880 | INFO     | traces error code: 0
[2025-11-27 07:08:47] 2025-11-27 06:08:46,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:08:47] 2025-11-27 06:08:46,933 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:08:47] 2025-11-27 06:08:46,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:08:47] 2025-11-27 06:08:46,938 [wrapper] pilotpid: 1447005
[2025-11-27 07:08:47] 2025-11-27 06:08:46,940 [wrapper] Pilot exit status: 0
[2025-11-27 07:08:47] 2025-11-27 06:08:46,947 [wrapper] pandaids: 6891592051
[2025-11-27 07:08:47] 2025-11-27 06:08:46,964 [wrapper] cleanup supervisor_pilot 1508859 1447006
[2025-11-27 07:08:47] 2025-11-27 06:08:46,967 [wrapper] Test setup, not cleaning
[2025-11-27 07:08:47] 2025-11-27 06:08:46,969 [wrapper] apfmon messages muted
[2025-11-27 07:08:47] 2025-11-27 06:08:46,971 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:08:47] 2025-11-27 06:08:46,973 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:08:47]  *** Error codes and diagnostics ***
[2025-11-27 07:08:47]     "exeErrorCode": 0,
[2025-11-27 07:08:47]     "exeErrorDiag": "",
[2025-11-27 07:08:47]     "pilotErrorCode": 0,
[2025-11-27 07:08:47]     "pilotErrorDiag": "",
[2025-11-27 07:08:47]  *** Listing of results directory ***
[2025-11-27 07:08:47] total 1307580
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:18 queuedata.json
[2025-11-27 07:08:47] -rwx------ 1 boinc boinc     36292 Nov 18 19:18 runpilot2-wrapper.sh
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc       100 Nov 26 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:08:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 22:54 run_atlas
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc       105 Nov 26 22:54 job.xml
[2025-11-27 07:08:47] -rw-r--r-- 2 boinc boinc 409326738 Nov 26 22:54 EVNT.47493065._000636.pool.root.1
[2025-11-27 07:08:47] drwxrwx--x 2 boinc boinc      4096 Nov 26 22:54 shared
[2025-11-27 07:08:47] -rw-r--r-- 2 boinc boinc    590100 Nov 26 22:54 input.tar.gz
[2025-11-27 07:08:47] -rw-r--r-- 2 boinc boinc     15120 Nov 26 22:54 start_atlas.sh
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc         0 Nov 26 22:54 boinc_setup_complete
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc      6440 Nov 26 22:54 init_data.xml
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc         0 Nov 26 22:54 boinc_lockfile
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc      2773 Nov 26 22:54 pandaJob.out
[2025-11-27 07:08:47] -rw------- 1 boinc boinc    991538 Nov 26 22:54 agis_schedconf.cvmfs.json
[2025-11-27 07:08:47] drwx------ 5 boinc boinc      4096 Nov 26 22:54 pilot3
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc       532 Nov 27 07:05 boinc_task_state.xml
[2025-11-27 07:08:47] -rw------- 1 boinc boinc        95 Nov 27 07:07 pilot_heartbeat.json
[2025-11-27 07:08:47] -rw------- 1 boinc boinc 915035044 Nov 27 07:07 HITS.47493068._005858.pool.root.1
[2025-11-27 07:08:47] -rw------- 1 boinc boinc      1040 Nov 27 07:08 memory_monitor_summary.json
[2025-11-27 07:08:47] -rw------- 1 boinc boinc   1516240 Nov 27 07:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:08:47] -rw------- 1 boinc boinc   1172525 Nov 27 07:08 log.47493068._005858.job.log.tgz.1
[2025-11-27 07:08:47] -rw------- 1 boinc boinc      8578 Nov 27 07:08 heartbeat.json
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc      8192 Nov 27 07:08 boinc_mmap_file
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc        28 Nov 27 07:08 wrapper_checkpoint.txt
[2025-11-27 07:08:47] -rw------- 1 boinc boinc      4824 Nov 27 07:08 pilotlog.txt
[2025-11-27 07:08:47] -rw------- 1 boinc boinc   4170134 Nov 27 07:08 log.47493068._005858.job.log.1
[2025-11-27 07:08:47] -rw------- 1 boinc boinc       353 Nov 27 07:08 output.list
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc       620 Nov 27 07:08 runtime_log
[2025-11-27 07:08:47] -rw------- 1 boinc boinc   5365760 Nov 27 07:08 result.tar.gz
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc      8778 Nov 27 07:08 runtime_log.err
[2025-11-27 07:08:47] -rw------- 1 boinc boinc       665 Nov 27 07:08 osNMDm9Sff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9fFKDmf1ceqm.diag
[2025-11-27 07:08:47] -rw-r--r-- 1 boinc boinc     10513 Nov 27 07:08 stderr.txt
[2025-11-27 07:08:47] HITS file was successfully produced:
[2025-11-27 07:08:47] -rw------- 1 boinc boinc 915035044 Nov 27 07:07 shared/HITS.pool.root.1
[2025-11-27 07:08:47]  *** Contents of shared directory: ***
[2025-11-27 07:08:47] total 1299172
[2025-11-27 07:08:47] -rw-r--r-- 2 boinc boinc 409326738 Nov 26 22:54 ATLAS.root_0
[2025-11-27 07:08:47] -rw-r--r-- 2 boinc boinc    590100 Nov 26 22:54 input.tar.gz
[2025-11-27 07:08:47] -rw-r--r-- 2 boinc boinc     15120 Nov 26 22:54 start_atlas.sh
[2025-11-27 07:08:47] -rw------- 1 boinc boinc 915035044 Nov 27 07:07 HITS.pool.root.1
[2025-11-27 07:08:47] -rw------- 1 boinc boinc   5365760 Nov 27 07:08 result.tar.gz
07:08:49 (1443285): run_atlas exited; CPU time 87682.515898
07:08:49 (1443285): called boinc_finish(0)

</stderr_txt>
]]>

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