Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:51:49 (2326351): wrapper (7.7.26015): starting
12:51:49 (2326351): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 12:51:49] Arguments: --nthreads 3
[2025-11-21 12:51:49] Threads: 3
[2025-11-21 12:51:49] Checking for CVMFS
[2025-11-21 12:51:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:51:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:51:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:51:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:51:50] 2.9.2.0 16720 1378 71664 153124 0 88 34517494 36864000 0 130560 0 19544744 99.999 38869 1607 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 12:51:50] CVMFS is ok
[2025-11-21 12:51:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 12:51:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 12:51:50] Further information can be found at the LHC@home message board.
[2025-11-21 12:51:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:51:50] Checking for apptainer binary...
[2025-11-21 12:51:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:51:50] Running /usr/bin/apptainer --version
[2025-11-21 12:51:50] apptainer version 1.4.1-1.1
[2025-11-21 12:51:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:51:50] thA335
[2025-11-21 12:51:50] apptainer works
[2025-11-21 12:51:50] Set ATHENA_PROC_NUMBER=3
[2025-11-21 12:51:50] Set ATHENA_CORE_NUMBER=3
[2025-11-21 12:51:50] Starting ATLAS job with PandaID=6891596371
[2025-11-21 12:51:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:56:06]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:56:06] 
[2025-11-21 12:56:06] 2025-11-21 11:55:13,314 | INFO     | ***************************************
[2025-11-21 12:56:06] 2025-11-21 11:55:13,817 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 12:56:06] 2025-11-21 11:55:13,831 | INFO     | sufficient remaining disk space (827114651648 B)
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | INFO     | update_server=False
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:56:06] 2025-11-21 11:55:13,832 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:56:06] 2025-11-21 11:55:13,833 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:56:06] 2025-11-21 11:55:14,236 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:56:06] 2025-11-21 11:55:14,236 | INFO     | aborting loop
[2025-11-21 12:56:06] 2025-11-21 11:55:14,699 | INFO     | all payload control threads have been joined
[2025-11-21 12:56:06] 2025-11-21 11:55:14,776 | INFO     | all data control threads have been joined
[2025-11-21 12:56:06] 2025-11-21 11:55:14,838 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:14,839 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,079 | INFO     | all job control threads have been joined
[2025-11-21 12:56:06] 2025-11-21 11:55:15,185 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,242 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,338 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,662 | INFO     | [job] validate thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,705 | INFO     | [payload] control thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,710 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,732 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,782 | INFO     | [data] control thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,797 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:15,838 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:16,085 | INFO     | [job] control thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:16,174 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:55:17,839 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:56:06] 2025-11-21 11:56:00,267 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:56:06] 2025-11-21 11:56:01,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466521859904)>', '<ExcThread(monitor, started 140465747777280)>']
[2025-11-21 12:56:06] 2025-11-21 11:56:02,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:56:06] 2025-11-21 11:56:02,066 | INFO     | [monitor] control thread has ended
[2025-11-21 12:56:06] 2025-11-21 11:56:06,452 | INFO     | all workflow threads have been joined
[2025-11-21 12:56:06] 2025-11-21 11:56:06,452 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:56:06] 2025-11-21 11:56:06,453 | INFO     | traces error code: 0
[2025-11-21 12:56:06] 2025-11-21 11:56:06,453 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:56:06] 2025-11-21 11:56:06,500 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:56:06] 2025-11-21 11:56:06,504 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:56:06] 2025-11-21 11:56:06,507 [wrapper] pilotpid: 2330083
[2025-11-21 12:56:06] 2025-11-21 11:56:06,510 [wrapper] Pilot exit status: 0
[2025-11-21 12:56:06] 2025-11-21 11:56:06,516 [wrapper] pandaids: 6891596371
[2025-11-21 12:56:06] 2025-11-21 11:56:06,533 [wrapper] cleanup supervisor_pilot 2330089 2330084
[2025-11-21 12:56:06] 2025-11-21 11:56:06,536 [wrapper] Test setup, not cleaning
[2025-11-21 12:56:06] 2025-11-21 11:56:06,539 [wrapper] apfmon messages muted
[2025-11-21 12:56:06] 2025-11-21 11:56:06,542 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:56:06] 2025-11-21 11:56:06,544 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:56:06]  *** Error codes and diagnostics ***
[2025-11-21 12:56:06]     "exeErrorCode": 65,
[2025-11-21 12:56:06]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 12:56:06]     "pilotErrorCode": 1305,
[2025-11-21 12:56:06]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 12:56:06]  *** Listing of results directory ***
[2025-11-21 12:56:06] total 404932
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:48 queuedata.json
[2025-11-21 12:56:06] -rwx------ 1 boinc boinc     36292 Nov 18 19:50 runpilot2-wrapper.sh
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc       100 Nov 21 12:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:56:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 12:51 run_atlas
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc       105 Nov 21 12:51 job.xml
[2025-11-21 12:56:06] -rw-r--r-- 2 boinc boinc 410455209 Nov 21 12:51 EVNT.47493065._000782.pool.root.1
[2025-11-21 12:56:06] -rw-r--r-- 2 boinc boinc    590090 Nov 21 12:51 input.tar.gz
[2025-11-21 12:56:06] -rw-r--r-- 2 boinc boinc     15120 Nov 21 12:51 start_atlas.sh
[2025-11-21 12:56:06] drwxrwx--x 2 boinc boinc      4096 Nov 21 12:51 shared
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc         0 Nov 21 12:51 boinc_setup_complete
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc      6194 Nov 21 12:51 init_data.xml
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc         0 Nov 21 12:51 boinc_lockfile
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc      2773 Nov 21 12:51 pandaJob.out
[2025-11-21 12:56:06] -rw------- 1 boinc boinc    989817 Nov 21 12:51 agis_schedconf.cvmfs.json
[2025-11-21 12:56:06] -rw------- 1 boinc boinc   1526164 Nov 21 12:51 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:56:06] drwx------ 5 boinc boinc      4096 Nov 21 12:52 pilot3
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc       522 Nov 21 12:52 boinc_task_state.xml
[2025-11-21 12:56:06] -rw------- 1 boinc boinc       957 Nov 21 12:53 memory_monitor_summary.json
[2025-11-21 12:56:06] -rw------- 1 boinc boinc     56180 Nov 21 12:53 log.47493068._006469.job.log.tgz.1
[2025-11-21 12:56:06] -rw------- 1 boinc boinc        95 Nov 21 12:55 pilot_heartbeat.json
[2025-11-21 12:56:06] -rw------- 1 boinc boinc      8403 Nov 21 12:55 heartbeat.json
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc      8192 Nov 21 12:56 boinc_mmap_file
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc        22 Nov 21 12:56 wrapper_checkpoint.txt
[2025-11-21 12:56:06] -rw------- 1 boinc boinc      4556 Nov 21 12:56 pilotlog.txt
[2025-11-21 12:56:06] -rw------- 1 boinc boinc     92840 Nov 21 12:56 log.47493068._006469.job.log.1
[2025-11-21 12:56:06] -rw------- 1 boinc boinc       186 Nov 21 12:56 output.list
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc       620 Nov 21 12:56 runtime_log
[2025-11-21 12:56:06] -rw------- 1 boinc boinc    163840 Nov 21 12:56 result.tar.gz
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc      8624 Nov 21 12:56 runtime_log.err
[2025-11-21 12:56:06] -rw------- 1 boinc boinc       648 Nov 21 12:56 j8aLDm7xff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvKGKDm8ItzHo.diag
[2025-11-21 12:56:06] -rw-r--r-- 1 boinc boinc      8281 Nov 21 12:56 stderr.txt
[2025-11-21 12:56:06] No HITS result produced
[2025-11-21 12:56:06]  *** Contents of shared directory: ***
[2025-11-21 12:56:06] total 401596
[2025-11-21 12:56:06] -rw-r--r-- 2 boinc boinc 410455209 Nov 21 12:51 ATLAS.root_0
[2025-11-21 12:56:06] -rw-r--r-- 2 boinc boinc    590090 Nov 21 12:51 input.tar.gz
[2025-11-21 12:56:06] -rw-r--r-- 2 boinc boinc     15120 Nov 21 12:51 start_atlas.sh
[2025-11-21 12:56:06] -rw------- 1 boinc boinc    163840 Nov 21 12:56 result.tar.gz
12:56:07 (2326351): run_atlas exited; CPU time 31.576680
12:56:07 (2326351): called boinc_finish(0)

</stderr_txt>
]]>

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