Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:56:11 (2347160): wrapper (7.7.26015): starting
12:56:11 (2347160): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 12:56:11] Arguments: --nthreads 3
[2025-11-21 12:56:11] Threads: 3
[2025-11-21 12:56:11] Checking for CVMFS
[2025-11-21 12:56:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:56:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:56:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:56:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:56:11] 2.9.2.0 16720 1383 71764 153124 0 88 34517512 36864000 0 130560 0 19607381 99.999 38869 1607 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 12:56:11] CVMFS is ok
[2025-11-21 12:56:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 12:56:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 12:56:11] Further information can be found at the LHC@home message board.
[2025-11-21 12:56:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:56:11] Checking for apptainer binary...
[2025-11-21 12:56:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:56:11] Running /usr/bin/apptainer --version
[2025-11-21 12:56:11] apptainer version 1.4.1-1.1
[2025-11-21 12:56:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:56:11] thA335
[2025-11-21 12:56:11] apptainer works
[2025-11-21 12:56:11] Set ATHENA_PROC_NUMBER=3
[2025-11-21 12:56:11] Set ATHENA_CORE_NUMBER=3
[2025-11-21 12:56:11] Starting ATLAS job with PandaID=6891106066
[2025-11-21 12:56:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 13:00:31]  *** The last 200 lines of the pilot log: ***
[2025-11-21 13:00:31] 2025-11-21 11:59:43,403 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 13:00:31] 2025-11-21 11:59:43,403 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 13:00:31] 2025-11-21 11:59:43,403 | INFO     | update_server=False
[2025-11-21 13:00:31] 2025-11-21 11:59:43,403 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 13:00:31] 2025-11-21 11:59:43,403 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:00:31] 2025-11-21 11:59:43,441 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:00:31] 2025-11-21 11:59:43,442 | INFO     | aborting loop
[2025-11-21 13:00:31] 2025-11-21 11:59:44,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 13:00:31] 2025-11-21 11:59:44,130 | INFO     | all job control threads have been joined
[2025-11-21 13:00:31] 2025-11-21 11:59:44,230 | INFO     | all data control threads have been joined
[2025-11-21 13:00:31] 2025-11-21 11:59:44,409 | INFO     | [job] retrieve thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:44,410 | INFO     | [job] queue monitor thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:44,447 | INFO     | [job] job monitor thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:44,470 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:44,689 | INFO     | all payload control threads have been joined
[2025-11-21 13:00:31] 2025-11-21 11:59:44,914 | INFO     | [payload] failed_post thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,136 | INFO     | [job] control thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,236 | INFO     | [data] control thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,551 | INFO     | [payload] validate_post thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,627 | INFO     | [job] validate thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,695 | INFO     | [payload] control thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,704 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,709 | INFO     | [data] copytool_in thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,768 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:45,844 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:46,113 | INFO     | [data] copytool_out thread has finished
[2025-11-21 13:00:31] 2025-11-21 11:59:46,299 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 13:00:31] 2025-11-21 11:59:50,306 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 13:00:31] 2025-11-21 12:00:13,257 | INFO     | PID=2350892 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 13:00:31] 2025-11-21 12:00:13,257 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 13:00:31] 2025-11-21 12:00:13,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 13:00:31] 2025-11-21 12:00:13,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 13:00:31] 2025-11-21 12:00:24,327 | INFO     | [monitor] cgroup control has ended
[2025-11-21 13:00:31] 2025-11-21 12:00:26,145 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139966805194560)>', '<ExcThread(monitor, started 139965803525888)>']
[2025-11-21 13:00:31] 2025-11-21 12:00:26,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 13:00:31] 2025-11-21 12:00:26,326 | INFO     | [monitor] control thread has ended
[2025-11-21 13:00:31] 2025-11-21 12:00:31,171 | INFO     | all workflow threads have been joined
[2025-11-21 13:00:31] 2025-11-21 12:00:31,172 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 13:00:31] 2025-11-21 12:00:31,172 | INFO     | traces error code: 0
[2025-11-21 13:00:31] 2025-11-21 12:00:31,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 13:00:31] 2025-11-21 12:00:31,219 [wrapper] ==== pilot stdout END ====
[2025-11-21 13:00:31] 2025-11-21 12:00:31,223 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 13:00:31] 2025-11-21 12:00:31,226 [wrapper] pilotpid: 2350892
[2025-11-21 13:00:31] 2025-11-21 12:00:31,229 [wrapper] Pilot exit status: 0
[2025-11-21 13:00:31] 2025-11-21 12:00:31,236 [wrapper] pandaids: 6891106066
[2025-11-21 13:00:31] 2025-11-21 12:00:31,253 [wrapper] cleanup supervisor_pilot 2350899 2350893
[2025-11-21 13:00:31] 2025-11-21 12:00:31,256 [wrapper] Test setup, not cleaning
[2025-11-21 13:00:31] 2025-11-21 12:00:31,258 [wrapper] apfmon messages muted
[2025-11-21 13:00:31] 2025-11-21 12:00:31,261 [wrapper] ==== wrapper stdout END ====
[2025-11-21 13:00:31] 2025-11-21 12:00:31,264 [wrapper] ==== wrapper stderr END ====
[2025-11-21 13:00:31]  *** Error codes and diagnostics ***
[2025-11-21 13:00:31]     "exeErrorCode": 65,
[2025-11-21 13:00:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 13:00:31]     "pilotErrorCode": 1305,
[2025-11-21 13:00:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 13:00:31]  *** Listing of results directory ***
[2025-11-21 13:00:31] total 404552
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc    576529 Nov 18 07:54 pilot3.tar.gz
[2025-11-21 13:00:31] -rwx------ 1 boinc boinc     36292 Nov 18 08:00 runpilot2-wrapper.sh
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc      5112 Nov 18 08:00 queuedata.json
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc       100 Nov 21 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 13:00:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 12:56 run_atlas
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc       105 Nov 21 12:56 job.xml
[2025-11-21 13:00:31] -rw-r--r-- 2 boinc boinc 410071623 Nov 21 12:56 EVNT.47483658._000250.pool.root.1
[2025-11-21 13:00:31] -rw-r--r-- 2 boinc boinc    590105 Nov 21 12:56 input.tar.gz
[2025-11-21 13:00:31] -rw-r--r-- 2 boinc boinc     15120 Nov 21 12:56 start_atlas.sh
[2025-11-21 13:00:31] drwxrwx--x 2 boinc boinc      4096 Nov 21 12:56 shared
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc         0 Nov 21 12:56 boinc_setup_complete
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc      6194 Nov 21 12:56 init_data.xml
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc         0 Nov 21 12:56 boinc_lockfile
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc      2773 Nov 21 12:56 pandaJob.out
[2025-11-21 13:00:31] -rw------- 1 boinc boinc    989817 Nov 21 12:56 agis_schedconf.cvmfs.json
[2025-11-21 13:00:31] -rw------- 1 boinc boinc   1526164 Nov 21 12:56 agis_ddmendpoints.agis.ALL.json
[2025-11-21 13:00:31] drwx------ 5 boinc boinc      4096 Nov 21 12:56 pilot3
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc       522 Nov 21 12:57 boinc_task_state.xml
[2025-11-21 13:00:31] -rw------- 1 boinc boinc       939 Nov 21 12:57 memory_monitor_summary.json
[2025-11-21 13:00:31] -rw------- 1 boinc boinc     54359 Nov 21 12:57 log.47483661._002199.job.log.tgz.1
[2025-11-21 13:00:31] -rw------- 1 boinc boinc        95 Nov 21 12:59 pilot_heartbeat.json
[2025-11-21 13:00:31] -rw------- 1 boinc boinc      8404 Nov 21 12:59 heartbeat.json
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc      8192 Nov 21 13:00 boinc_mmap_file
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc        22 Nov 21 13:00 wrapper_checkpoint.txt
[2025-11-21 13:00:31] -rw------- 1 boinc boinc      4752 Nov 21 13:00 pilotlog.txt
[2025-11-21 13:00:31] -rw------- 1 boinc boinc     93674 Nov 21 13:00 log.47483661._002199.job.log.1
[2025-11-21 13:00:31] -rw------- 1 boinc boinc       186 Nov 21 13:00 output.list
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc       620 Nov 21 13:00 runtime_log
[2025-11-21 13:00:31] -rw------- 1 boinc boinc    163840 Nov 21 13:00 result.tar.gz
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc      8624 Nov 21 13:00 runtime_log.err
[2025-11-21 13:00:31] -rw------- 1 boinc boinc       649 Nov 21 13:00 MbBODmHsUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQ9qMDmOMIpMm.diag
[2025-11-21 13:00:31] -rw-r--r-- 1 boinc boinc      8018 Nov 21 13:00 stderr.txt
[2025-11-21 13:00:31] No HITS result produced
[2025-11-21 13:00:31]  *** Contents of shared directory: ***
[2025-11-21 13:00:31] total 401224
[2025-11-21 13:00:31] -rw-r--r-- 2 boinc boinc 410071623 Nov 21 12:56 ATLAS.root_0
[2025-11-21 13:00:31] -rw-r--r-- 2 boinc boinc    590105 Nov 21 12:56 input.tar.gz
[2025-11-21 13:00:31] -rw-r--r-- 2 boinc boinc     15120 Nov 21 12:56 start_atlas.sh
[2025-11-21 13:00:31] -rw------- 1 boinc boinc    163840 Nov 21 13:00 result.tar.gz
13:00:33 (2347160): run_atlas exited; CPU time 32.431458
13:00:33 (2347160): called boinc_finish(0)

</stderr_txt>
]]>

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