Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:34:22 (25247): wrapper (7.7.26015): starting
06:34:22 (25247): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 06:34:22] Arguments: --nthreads 8
[2025-11-21 06:34:22] Threads: 8
[2025-11-21 06:34:22] Checking for CVMFS
[2025-11-21 06:34:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 06:34:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 06:34:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 06:34:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 06:34:23] 2.11.2.0 2989 66048 82032 153124 3 82 18215630 20275200 1 130560 0 18539138 99.877 3516942 28998 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 06:34:23] CVMFS is ok
[2025-11-21 06:34:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 06:34:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 06:34:23] Further information can be found at the LHC@home message board.
[2025-11-21 06:34:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 06:34:23] Checking for apptainer binary...
[2025-11-21 06:34:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 06:34:23] Running /usr/bin/apptainer --version
[2025-11-21 06:34:23] apptainer version 1.3.2-1.el7
[2025-11-21 06:34:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 06:34:24] c-204-24.aglt2.org
[2025-11-21 06:34:24] apptainer works
[2025-11-21 06:34:24] Set ATHENA_PROC_NUMBER=8
[2025-11-21 06:34:24] Set ATHENA_CORE_NUMBER=8
[2025-11-21 06:34:24] Starting ATLAS job with PandaID=6894266388
[2025-11-21 06:34:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:01:16]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:01:16] 2025-11-22 00:00:41,151 | INFO     | time since job start (44758s) is within the limit (172800.0s)
[2025-11-21 19:01:16] 2025-11-22 00:00:43,158 | INFO     | time since job start (44760s) is within the limit (172800.0s)
[2025-11-21 19:01:16] 2025-11-22 00:00:43,223 | INFO     | monitor loop #3294: job 0:6894266388 is in state 'finished'
[2025-11-21 19:01:16] 2025-11-22 00:00:43,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,687 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 19:01:16] 2025-11-22 00:00:44,690 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-21 19:01:16] 2025-11-22 00:00:44,692 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894266388/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,693 | INFO     | extracted standard info from prmon json
[2025-11-21 19:01:16] 2025-11-22 00:00:44,693 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 19:01:16] 2025-11-22 00:00:44,693 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 19:01:16] 2025-11-22 00:00:44,707 | INFO     | fitting pss+swap vs Time
[2025-11-21 19:01:16] 2025-11-22 00:00:44,708 | INFO     | sum of square deviations: 122120899251.63158
[2025-11-21 19:01:16] 2025-11-22 00:00:44,721 | INFO     | sum of deviations: 751384326685.2238
[2025-11-21 19:01:16] 2025-11-22 00:00:44,721 | INFO     | mean x: 1763747241.570259
[2025-11-21 19:01:16] 2025-11-22 00:00:44,721 | INFO     | mean y: 2876751.9276944064
[2025-11-21 19:01:16] 2025-11-22 00:00:44,721 | INFO     | intersect: -10849090779.194822
[2025-11-21 19:01:16] 2025-11-22 00:00:44,722 | INFO     | chi2: 5.432473580211453
[2025-11-21 19:01:16] 2025-11-22 00:00:44,723 | INFO     | sum of square deviations: 119638970899.99432
[2025-11-21 19:01:16] 2025-11-22 00:00:44,734 | INFO     | sum of deviations: 981450468894.1743
[2025-11-21 19:01:16] 2025-11-22 00:00:44,734 | INFO     | mean x: 1763747089.0741758
[2025-11-21 19:01:16] 2025-11-22 00:00:44,734 | INFO     | mean y: 2890883.1634615385
[2025-11-21 19:01:16] 2025-11-22 00:00:44,734 | INFO     | intersect: -14465892946.727098
[2025-11-21 19:01:16] 2025-11-22 00:00:44,735 | INFO     | chi2: 2.5699274139528807
[2025-11-21 19:01:16] 2025-11-22 00:00:44,735 | INFO     | current chi2=2.5699274139528807 (change=52.693236773130344 %)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,736 | INFO     | sum of square deviations: 117190903648.33466
[2025-11-21 19:01:16] 2025-11-22 00:00:44,747 | INFO     | sum of deviations: 1042982137164.417
[2025-11-21 19:01:16] 2025-11-22 00:00:44,747 | INFO     | mean x: 1763746936.5781467
[2025-11-21 19:01:16] 2025-11-22 00:00:44,747 | INFO     | mean y: 2894709.2669432918
[2025-11-21 19:01:16] 2025-11-22 00:00:44,747 | INFO     | intersect: -15694198597.98831
[2025-11-21 19:01:16] 2025-11-22 00:00:44,748 | INFO     | chi2: 2.2487102334671123
[2025-11-21 19:01:16] 2025-11-22 00:00:44,748 | INFO     | current chi2=2.2487102334671123 (change=12.499075994978973 %)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,748 | INFO     | right removable region: 722
[2025-11-21 19:01:16] 2025-11-22 00:00:44,749 | INFO     | sum of square deviations: 119638715919.99423
[2025-11-21 19:01:16] 2025-11-22 00:00:44,760 | INFO     | sum of deviations: 556160185614.2056
[2025-11-21 19:01:16] 2025-11-22 00:00:44,760 | INFO     | mean x: 1763747394.0741758
[2025-11-21 19:01:16] 2025-11-22 00:00:44,760 | INFO     | mean y: 2888726.7184065934
[2025-11-21 19:01:16] 2025-11-22 00:00:44,760 | INFO     | intersect: -8196180199.437887
[2025-11-21 19:01:16] 2025-11-22 00:00:44,761 | INFO     | chi2: 3.323030079375311
[2025-11-21 19:01:16] 2025-11-22 00:00:44,761 | INFO     | current chi2=3.323030079375311 (change=38.83025788694281 %)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,762 | INFO     | sum of square deviations: 117190526790.7911
[2025-11-21 19:01:16] 2025-11-22 00:00:44,772 | INFO     | sum of deviations: 514339155984.142
[2025-11-21 19:01:16] 2025-11-22 00:00:44,773 | INFO     | mean x: 1763747546.5739973
[2025-11-21 19:01:16] 2025-11-22 00:00:44,773 | INFO     | mean y: 2891330.2309820196
[2025-11-21 19:01:16] 2025-11-22 00:00:44,773 | INFO     | intersect: -7738045154.280635
[2025-11-21 19:01:16] 2025-11-22 00:00:44,774 | INFO     | chi2: 3.2798080182375395
[2025-11-21 19:01:16] 2025-11-22 00:00:44,774 | INFO     | current chi2=3.2798080182375395 (change=1.3006822118774382 %)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,774 | INFO     | left removable region: 20
[2025-11-21 19:01:16] 2025-11-22 00:00:44,775 | INFO     | sum of square deviations: 107272822660.87247
[2025-11-21 19:01:16] 2025-11-22 00:00:44,785 | INFO     | sum of deviations: 754497755666.6674
[2025-11-21 19:01:16] 2025-11-22 00:00:44,785 | INFO     | mean x: 1763747516.0854702
[2025-11-21 19:01:16] 2025-11-22 00:00:44,785 | INFO     | mean y: 2912735.5555555555
[2025-11-21 19:01:16] 2025-11-22 00:00:44,785 | INFO     | intersect: -12402312646.236624
[2025-11-21 19:01:16] 2025-11-22 00:00:44,786 | INFO     | chi2: 0.06871391808767742
[2025-11-21 19:01:16] 2025-11-22 00:00:44,786 | INFO     | current memory leak: 7.03 B/s (using 702 data points, chi2=0.07)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,787 | INFO     | could have reported an average CPU frequency of 2165 MHz (28 samples)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,787 | INFO     | ..............................
[2025-11-21 19:01:16] 2025-11-22 00:00:44,787 | INFO     | . Timing measurements:
[2025-11-21 19:01:16] 2025-11-22 00:00:44,787 | INFO     | . get job = 0 s
[2025-11-21 19:01:16] 2025-11-22 00:00:44,787 | INFO     | . initial setup = 2 s
[2025-11-21 19:01:16] 2025-11-22 00:00:44,787 | INFO     | . payload setup = 9 s
[2025-11-21 19:01:16] 2025-11-22 00:00:44,787 | INFO     | . stage-in = 0 s
[2025-11-21 19:01:16] 2025-11-22 00:00:44,787 | INFO     | . payload execution = 44718 s
[2025-11-21 19:01:16] 2025-11-22 00:00:44,788 | INFO     | . stage-out = 3 s
[2025-11-21 19:01:16] 2025-11-22 00:00:44,788 | INFO     | . log creation = 0 s
[2025-11-21 19:01:16] 2025-11-22 00:00:44,788 | INFO     | ..............................
[2025-11-21 19:01:16] 2025-11-22 00:00:44,879 | INFO     | 
[2025-11-21 19:01:16] 2025-11-22 00:00:44,879 | INFO     | job summary report
[2025-11-21 19:01:16] 2025-11-22 00:00:44,879 | INFO     | --------------------------------------------------
[2025-11-21 19:01:16] 2025-11-22 00:00:44,879 | INFO     | PanDA job id: 6894266388
[2025-11-21 19:01:16] 2025-11-22 00:00:44,880 | INFO     | task id: 47533967
[2025-11-21 19:01:16] 2025-11-22 00:00:44,880 | INFO     | errors: (none)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,880 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 19:01:16] 2025-11-22 00:00:44,880 | INFO     | pilot state: finished 
[2025-11-21 19:01:16] 2025-11-22 00:00:44,880 | INFO     | transexitcode: 0
[2025-11-21 19:01:16] 2025-11-22 00:00:44,880 | INFO     | exeerrorcode: 0
[2025-11-21 19:01:16] 2025-11-22 00:00:44,881 | INFO     | exeerrordiag: 
[2025-11-21 19:01:16] 2025-11-22 00:00:44,881 | INFO     | exitcode: 0
[2025-11-21 19:01:16] 2025-11-22 00:00:44,881 | INFO     | exitmsg: OK
[2025-11-21 19:01:16] 2025-11-22 00:00:44,881 | INFO     | cpuconsumptiontime: 346335 s
[2025-11-21 19:01:16] 2025-11-22 00:00:44,881 | INFO     | nevents: 1000
[2025-11-21 19:01:16] 2025-11-22 00:00:44,881 | INFO     | neventsw: 0
[2025-11-21 19:01:16] 2025-11-22 00:00:44,881 | INFO     | pid: 4883
[2025-11-21 19:01:16] 2025-11-22 00:00:44,881 | INFO     | pgrp: 4883
[2025-11-21 19:01:16] 2025-11-22 00:00:44,882 | INFO     | corecount: 8
[2025-11-21 19:01:16] 2025-11-22 00:00:44,882 | INFO     | event service: False
[2025-11-21 19:01:16] 2025-11-22 00:00:44,882 | INFO     | sizes: {0: 2297979, 1: 2298835, 7: 2299097, 12: 2299125, 44731: 2344966, 44737: 2354172, 44745: 2354362}
[2025-11-21 19:01:16] 2025-11-22 00:00:44,882 | INFO     | --------------------------------------------------
[2025-11-21 19:01:16] 2025-11-22 00:00:44,882 | INFO     | 
[2025-11-21 19:01:16] 2025-11-22 00:00:44,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 19:01:16] 2025-11-22 00:00:44,910 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,911 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,911 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,911 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,913 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,913 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,913 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,913 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,913 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,913 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,914 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,914 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,914 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 19:01:16] 2025-11-22 00:00:44,914 | INFO     | job 6894266388 has completed (purged errors)
[2025-11-21 19:01:16] 2025-11-22 00:00:44,915 | INFO     | overall cleanup function is called
[2025-11-21 19:01:16] 2025-11-22 00:00:45,930 | INFO     | --- collectZombieJob: --- 10, [4883]
[2025-11-21 19:01:16] 2025-11-22 00:00:45,930 | INFO     | zombie collector waiting for pid 4883
[2025-11-21 19:01:16] 2025-11-22 00:00:45,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 19:01:16] 2025-11-22 00:00:45,931 | INFO     | collected zombie processes
[2025-11-21 19:01:16] 2025-11-22 00:00:45,931 | INFO     | will attempt to kill all subprocesses of pid=4883
[2025-11-21 19:01:16] 2025-11-22 00:00:46,022 | INFO     | process IDs to be killed: [4883] (in reverse order)
[2025-11-21 19:01:16] 2025-11-22 00:00:46,079 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 19:01:16] 2025-11-22 00:00:46,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 19:01:16] 2025-11-22 00:00:46,083 | INFO     | did not find any defunct processes belonging to 4883
[2025-11-21 19:01:16] 2025-11-22 00:00:46,085 | INFO     | did not find any defunct processes belonging to 4883
[2025-11-21 19:01:16] 2025-11-22 00:00:46,088 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 19:01:16] 2025-11-22 00:00:46,088 | INFO     | ready for new job
[2025-11-21 19:01:16] 2025-11-22 00:00:46,088 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 19:01:16] 2025-11-22 00:00:46,091 | INFO     | ***************************************
[2025-11-21 19:01:16] 2025-11-22 00:00:46,092 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 19:01:16] 2025-11-22 00:00:46,092 | INFO     | ***************************************
[2025-11-21 19:01:16] 2025-11-22 00:00:46,092 | INFO     | 
[2025-11-21 19:01:16] 2025-11-22 00:00:46,092 | INFO     | architecture information:
[2025-11-21 19:01:16] 2025-11-22 00:00:46,093 | INFO     | executing command: cat /etc/os-release
[2025-11-21 19:01:16] 2025-11-22 00:00:46,111 | INFO     | cat /etc/os-release:
[2025-11-21 19:01:16] NAME="CentOS Linux"
[2025-11-21 19:01:16] VERSION="7 (Core)"
[2025-11-21 19:01:16] ID="centos"
[2025-11-21 19:01:16] ID_LIKE="rhel fedora"
[2025-11-21 19:01:16] VERSION_ID="7"
[2025-11-21 19:01:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 19:01:16] ANSI_COLOR="0;31"
[2025-11-21 19:01:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 19:01:16] HOME_URL="https://www.centos.org/"
[2025-11-21 19:01:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 19:01:16] 
[2025-11-21 19:01:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 19:01:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 19:01:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 19:01:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 19:01:16] 
[2025-11-21 19:01:16] 2025-11-22 00:00:46,112 | INFO     | ***************************************
[2025-11-21 19:01:16] 2025-11-22 00:00:46,615 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 19:01:16] 2025-11-22 00:00:46,635 | INFO     | sufficient remaining disk space (17597202432 B)
[2025-11-21 19:01:16] 2025-11-22 00:00:46,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 19:01:16] 2025-11-22 00:00:46,636 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:01:16] 2025-11-22 00:00:46,637 | INFO     | update_server=False
[2025-11-21 19:01:16] 2025-11-22 00:00:46,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:01:16] 2025-11-22 00:00:46,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:01:16] 2025-11-22 00:00:46,732 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:01:16] 2025-11-22 00:00:46,732 | INFO     | aborting loop
[2025-11-21 19:01:16] 2025-11-22 00:00:47,056 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:01:16] 2025-11-22 00:00:47,139 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:01:16] 2025-11-22 00:00:47,248 | INFO     | all data control threads have been joined
[2025-11-21 19:01:16] 2025-11-22 00:00:47,261 | INFO     | all job control threads have been joined
[2025-11-21 19:01:16] 2025-11-22 00:00:47,338 | INFO     | all payload control threads have been joined
[2025-11-21 19:01:16] 2025-11-22 00:00:47,643 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:47,643 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:47,725 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:47,738 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:47,752 | INFO     | [job] validate thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:47,872 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:48,253 | INFO     | [data] control thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:48,267 | INFO     | [job] control thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:48,344 | INFO     | [payload] control thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:48,345 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:48,372 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:48,562 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:48,726 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:49,045 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:49,062 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:51,145 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:01:16] 2025-11-22 00:00:57,115 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:01:16] 2025-11-22 00:00:58,860 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140237686388544)>', '<ExcThread(monitor, started 140236646508288)>']
[2025-11-21 19:01:16] 2025-11-22 00:01:03,886 | INFO     | all workflow threads have been joined
[2025-11-21 19:01:16] 2025-11-22 00:01:03,886 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:01:16] 2025-11-22 00:01:03,886 | INFO     | traces error code: 0
[2025-11-21 19:01:16] 2025-11-22 00:01:03,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:01:16] 2025-11-22 00:01:16,385 | INFO     | PID=28926 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 19:01:16] 2025-11-22 00:01:16,389 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:01:16] 2025-11-22 00:01:16,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:01:16] 2025-11-22 00:01:16,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:01:16] 2025-11-22 00:01:16,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:01:16] 2025-11-22 00:01:16,389 | INFO     | [monitor] control thread has ended
[2025-11-21 19:01:16] 2025-11-22 00:01:16,495 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:01:16] 2025-11-22 00:01:16,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:01:16] 2025-11-22 00:01:16,505 [wrapper] pilotpid: 28926
[2025-11-21 19:01:16] 2025-11-22 00:01:16,510 [wrapper] Pilot exit status: 0
[2025-11-21 19:01:16] 2025-11-22 00:01:16,527 [wrapper] pandaids: 6894266388
[2025-11-21 19:01:16] 2025-11-22 00:01:16,573 [wrapper] cleanup supervisor_pilot 12062 28927
[2025-11-21 19:01:16] 2025-11-22 00:01:16,578 [wrapper] Test setup, not cleaning
[2025-11-21 19:01:16] 2025-11-22 00:01:16,583 [wrapper] apfmon messages muted
[2025-11-21 19:01:16] 2025-11-22 00:01:16,588 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:01:16] 2025-11-22 00:01:16,593 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:01:16]  *** Error codes and diagnostics ***
[2025-11-21 19:01:16]     "exeErrorCode": 0,
[2025-11-21 19:01:16]     "exeErrorDiag": "",
[2025-11-21 19:01:16]     "pilotErrorCode": 0,
[2025-11-21 19:01:16]     "pilotErrorDiag": "",
[2025-11-21 19:01:16]  *** Listing of results directory ***
[2025-11-21 19:01:16] total 1313664
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 00:09 pilot3.tar.gz
[2025-11-21 19:01:16] -rwx------ 1 boincer umatlas     36292 Nov 21 00:13 runpilot2-wrapper.sh
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 00:13 queuedata.json
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas       100 Nov 21 06:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:01:16] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 06:34 run_atlas
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas       105 Nov 21 06:34 job.xml
[2025-11-21 19:01:16] -rw-r--r-- 2 boincer umatlas 409223014 Nov 21 06:34 EVNT.47493127._002230.pool.root.1
[2025-11-21 19:01:16] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 06:34 start_atlas.sh
[2025-11-21 19:01:16] drwxrwx--x 2 boincer umatlas      4096 Nov 21 06:34 shared
[2025-11-21 19:01:16] -rw-r--r-- 2 boincer umatlas    590097 Nov 21 06:34 input.tar.gz
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas         0 Nov 21 06:34 boinc_lockfile
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas      2786 Nov 21 06:34 pandaJob.out
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas        57 Nov 21 06:34 setup.sh.local
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas    989817 Nov 21 06:34 agis_schedconf.cvmfs.json
[2025-11-21 19:01:16] drwx------ 5 boincer umatlas      4096 Nov 21 06:34 pilot3
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas       533 Nov 21 18:50 boinc_task_state.xml
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas      5912 Nov 21 18:57 init_data.xml
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas 915759871 Nov 21 18:59 HITS.47533967._002012.pool.root.1
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas      1064 Nov 21 19:00 memory_monitor_summary.json
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas   1526164 Nov 21 19:00 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas   1983120 Nov 21 19:00 log.47533967._002012.job.log.tgz.1
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas        95 Nov 21 19:00 pilot_heartbeat.json
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas      8673 Nov 21 19:00 heartbeat.json
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas        29 Nov 21 19:01 wrapper_checkpoint.txt
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 19:01 boinc_mmap_file
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas       745 Nov 21 19:01 pilotlog.txt
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas   6158793 Nov 21 19:01 log.47533967._002012.job.log.1
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas       353 Nov 21 19:01 output.list
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas       620 Nov 21 19:01 runtime_log
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas   8161280 Nov 21 19:01 result.tar.gz
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas       668 Nov 21 19:01 xVxKDmadYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtLHKDmnpaCzm.diag
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas      9343 Nov 21 19:01 runtime_log.err
[2025-11-21 19:01:16] -rw-r--r-- 1 boincer umatlas     21296 Nov 21 19:01 stderr.txt
[2025-11-21 19:01:16] HITS file was successfully produced:
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas 915759871 Nov 21 18:59 shared/HITS.pool.root.1
[2025-11-21 19:01:16]  *** Contents of shared directory: ***
[2025-11-21 19:01:16] total 1302508
[2025-11-21 19:01:16] -rw-r--r-- 2 boincer umatlas 409223014 Nov 21 06:34 ATLAS.root_0
[2025-11-21 19:01:16] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 06:34 start_atlas.sh
[2025-11-21 19:01:16] -rw-r--r-- 2 boincer umatlas    590097 Nov 21 06:34 input.tar.gz
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas 915759871 Nov 21 18:59 HITS.pool.root.1
[2025-11-21 19:01:16] -rw------- 1 boincer umatlas   8161280 Nov 21 19:01 result.tar.gz
19:01:17 (25247): run_atlas exited; CPU time 342650.922056
19:01:17 (25247): called boinc_finish(0)

</stderr_txt>
]]>

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