Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:55:01 (3652208): wrapper (7.7.26015): starting
03:55:01 (3652208): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 03:55:01] Arguments: --nthreads 12
[2025-11-21 03:55:01] Threads: 12
[2025-11-21 03:55:01] Checking for CVMFS
[2025-11-21 03:55:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:55:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:55:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:55:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:55:02] 2.11.5.0 2081521 21109 222856 153124 0 174 41456407 45568000 21061 130560 0 130641205 99.801 75782482 17700 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-21 03:55:02] CVMFS is ok
[2025-11-21 03:55:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 03:55:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 03:55:02] Further information can be found at the LHC@home message board.
[2025-11-21 03:55:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:55:02] Checking for apptainer binary...
[2025-11-21 03:55:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:55:02] Running /usr/bin/apptainer --version
[2025-11-21 03:55:02] apptainer version 1.4.1-1.el9
[2025-11-21 03:55:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:55:02] wns0041.triumf.lcg
[2025-11-21 03:55:02] apptainer works
[2025-11-21 03:55:02] Set ATHENA_PROC_NUMBER=12
[2025-11-21 03:55:02] Set ATHENA_CORE_NUMBER=12
[2025-11-21 03:55:02] Starting ATLAS job with PandaID=6894266203
[2025-11-21 03:55:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 03:59:37]  *** The last 200 lines of the pilot log: ***
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 03:59:37] 2025-11-21 11:59:04,793 | WARNING  | wrong length of table data, x=[1763726146.0, 1763726207.0], y=[1612.0, 733721.0] (must be same and length>=4)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,794 | INFO     | could have reported an average CPU frequency of 1450 MHz (4 samples)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | ..............................
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . Timing measurements:
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . get job = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . initial setup = 3 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . payload setup = 7 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . stage-in = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . payload execution = 75 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . stage-out = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | . log creation = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | ..............................
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894266203/pilotlog.txt
[2025-11-21 03:59:37] 2025-11-21 11:59:04,816 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 03:59:37] - Log from pilotlog.txt -
[2025-11-21 03:59:37] 2025-11-21 11:59:04,791 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894266203/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | INFO     | extracted standard info from prmon json
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 03:59:37] 2025-11-21 11:59:04,793 | WARNING  | wrong length of table data, x=[1763726146.0, 1763726207.0], y=[1612.0, 733721.0] (must be same and length>=4)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,794 | INFO     | could have reported an average CPU frequency of 1450 MHz (4 samples)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | ..............................
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . Timing measurements:
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . get job = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . initial setup = 3 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . payload setup = 7 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . stage-in = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . payload execution = 75 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . stage-out = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | . log creation = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | ..............................
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894266203/pilotlog.txt
[2025-11-21 03:59:37] 2025-11-21 11:59:04,816 | WARNING  | 
[2025-11-21 03:59:37] [begin log extracts]
[2025-11-21 03:59:37] - Log from pilotlog.txt -
[2025-11-21 03:59:37] 2025-11-21 11:59:04,791 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894266203/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | INFO     | extracted standard info from prmon json
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 03:59:37] 2025-11-21 11:59:04,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 03:59:37] 2025-11-21 11:59:04,793 | WARNING  | wrong length of table data, x=[1763726146.0, 1763726207.0], y=[1612.0, 733721.0] (must be same and length>=4)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,794 | INFO     | could have reported an average CPU frequency of 1450 MHz (4 samples)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | ..............................
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . Timing measurements:
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . get job = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . initial setup = 3 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . payload setup = 7 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . stage-in = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . payload execution = 75 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,795 | INFO     | . stage-out = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | . log creation = 0 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | ..............................
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 03:59:37] 2025-11-21 11:59:04,796 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894266203/pilotlog.txt
[2025-11-21 03:59:37] [end log extracts]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,817 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,818 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 03:59:37] 2025-11-21 11:59:04,927 | INFO     | 
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | job summary report
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | --------------------------------------------------
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | PanDA job id: 6894266203
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | task id: 47533967
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 03:56:51,233 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | pilot state: failed 
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | transexitcode: 65
[2025-11-21 03:59:37] 2025-11-21 11:59:04,928 | INFO     | exeerrorcode: 65
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | exitcode: 65
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | cpuconsumptiontime: 66 s
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | nevents: 0
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | neventsw: 0
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | pid: 3662594
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | pgrp: 3662594
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | corecount: 12
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | event service: False
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | sizes: {0: 2298633, 1: 2298832, 6: 2299094, 12: 2299122, 87: 2324519, 88: 2328809, 89: 2328965, 213: 2329131}
[2025-11-21 03:59:37] 2025-11-21 11:59:04,929 | INFO     | --------------------------------------------------
[2025-11-21 03:59:37] 2025-11-21 11:59:04,930 | INFO     | 
[2025-11-21 03:59:37] 2025-11-21 11:59:04,930 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 03:59:37] 2025-11-21 11:59:04,948 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,949 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 03:59:37] 2025-11-21 11:59:04,950 | INFO     | job 6894266203 has completed (purged errors)
[2025-11-21 03:59:37] 2025-11-21 11:59:04,951 | INFO     | overall cleanup function is called
[2025-11-21 03:59:37] 2025-11-21 11:59:05,959 | INFO     | --- collectZombieJob: --- 10, [3662594]
[2025-11-21 03:59:37] 2025-11-21 11:59:05,959 | INFO     | zombie collector waiting for pid 3662594
[2025-11-21 03:59:37] 2025-11-21 11:59:05,959 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 03:59:37] 2025-11-21 11:59:05,959 | INFO     | collected zombie processes
[2025-11-21 03:59:37] 2025-11-21 11:59:05,959 | INFO     | will attempt to kill all subprocesses of pid=3662594
[2025-11-21 03:59:37] 2025-11-21 11:59:06,305 | INFO     | process IDs to be killed: [3662594] (in reverse order)
[2025-11-21 03:59:37] 2025-11-21 11:59:06,422 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 03:59:37] 2025-11-21 11:59:06,422 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 03:59:37] 2025-11-21 11:59:06,435 | INFO     | did not find any defunct processes belonging to 3662594
[2025-11-21 03:59:37] 2025-11-21 11:59:06,447 | INFO     | did not find any defunct processes belonging to 3662594
[2025-11-21 03:59:37] 2025-11-21 11:59:06,448 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 03:59:37] 2025-11-21 11:59:06,449 | INFO     | ready for new job
[2025-11-21 03:59:37] 2025-11-21 11:59:06,449 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 03:59:37] 2025-11-21 11:59:06,451 | INFO     | ***************************************
[2025-11-21 03:59:37] 2025-11-21 11:59:06,451 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 03:59:37] 2025-11-21 11:59:06,451 | INFO     | ***************************************
[2025-11-21 03:59:37] 2025-11-21 11:59:06,451 | INFO     | 
[2025-11-21 03:59:37] 2025-11-21 11:59:06,454 | INFO     | architecture information:
[2025-11-21 03:59:37] 2025-11-21 11:59:06,455 | INFO     | executing command: cat /etc/os-release
[2025-11-21 03:59:37] 2025-11-21 11:59:06,468 | INFO     | cat /etc/os-release:
[2025-11-21 03:59:37] NAME="CentOS Linux"
[2025-11-21 03:59:37] VERSION="7 (Core)"
[2025-11-21 03:59:37] ID="centos"
[2025-11-21 03:59:37] ID_LIKE="rhel fedora"
[2025-11-21 03:59:37] VERSION_ID="7"
[2025-11-21 03:59:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 03:59:37] ANSI_COLOR="0;31"
[2025-11-21 03:59:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 03:59:37] HOME_URL="https://www.centos.org/"
[2025-11-21 03:59:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 03:59:37] 
[2025-11-21 03:59:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 03:59:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 03:59:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 03:59:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 03:59:37] 
[2025-11-21 03:59:37] 2025-11-21 11:59:06,468 | INFO     | ***************************************
[2025-11-21 03:59:37] 2025-11-21 11:59:06,970 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 03:59:37] 2025-11-21 11:59:06,997 | INFO     | sufficient remaining disk space (1978933444608 B)
[2025-11-21 03:59:37] 2025-11-21 11:59:06,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 03:59:37] 2025-11-21 11:59:06,997 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 03:59:37] 2025-11-21 11:59:06,998 | INFO     | update_server=False
[2025-11-21 03:59:37] 2025-11-21 11:59:06,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 03:59:37] 2025-11-21 11:59:07,657 | INFO     | all data control threads have been joined
[2025-11-21 03:59:37] 2025-11-21 11:59:07,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:59:37] 2025-11-21 11:59:07,703 | INFO     | aborting loop
[2025-11-21 03:59:37] 2025-11-21 11:59:07,984 | INFO     | all payload control threads have been joined
[2025-11-21 03:59:37] 2025-11-21 11:59:08,001 | INFO     | [job] retrieve thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,128 | INFO     | all job control threads have been joined
[2025-11-21 03:59:37] 2025-11-21 11:59:08,152 | INFO     | [data] copytool_in thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,155 | INFO     | [job] validate thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 03:59:37] 2025-11-21 11:59:08,324 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,393 | INFO     | [payload] validate_post thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,510 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,656 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 03:59:37] 2025-11-21 11:59:08,659 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,659 | INFO     | [data] control thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,708 | INFO     | [job] job monitor thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,954 | INFO     | [payload] failed_post thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:08,989 | INFO     | [payload] control thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:09,134 | INFO     | [job] control thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:09,415 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:09,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:59:37] 2025-11-21 11:59:10,213 | INFO     | [data] copytool_out thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:10,948 | INFO     | [job] queue monitor thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:12,668 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 03:59:37] 2025-11-21 11:59:14,980 | INFO     | [monitor] cgroup control has ended
[2025-11-21 03:59:37] 2025-11-21 11:59:16,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171677210432)>', '<ExcThread(monitor, started 140171139864320)>']
[2025-11-21 03:59:37] 2025-11-21 11:59:21,476 | INFO     | all workflow threads have been joined
[2025-11-21 03:59:37] 2025-11-21 11:59:21,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 03:59:37] 2025-11-21 11:59:21,477 | INFO     | traces error code: 0
[2025-11-21 03:59:37] 2025-11-21 11:59:21,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 03:59:37] 2025-11-21 11:59:37,244 | INFO     | PID=3655872 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 03:59:37] 2025-11-21 11:59:37,244 | INFO     | .. there are 35 such processes running
[2025-11-21 03:59:37] 2025-11-21 11:59:37,245 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 03:59:37] 2025-11-21 11:59:37,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 03:59:37] 2025-11-21 11:59:37,245 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 03:59:37] 2025-11-21 11:59:37,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 03:59:37] 2025-11-21 11:59:37,245 | INFO     | [monitor] control thread has ended
[2025-11-21 03:59:37] 2025-11-21 11:59:37,465 [wrapper] ==== pilot stdout END ====
[2025-11-21 03:59:37] 2025-11-21 11:59:37,468 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 03:59:37] 2025-11-21 11:59:37,471 [wrapper] pilotpid: 3655872
[2025-11-21 03:59:37] 2025-11-21 11:59:37,474 [wrapper] Pilot exit status: 0
[2025-11-21 03:59:37] 2025-11-21 11:59:37,485 [wrapper] pandaids: 6894266203
[2025-11-21 03:59:37] 2025-11-21 11:59:37,565 [wrapper] cleanup supervisor_pilot 3655878 3655873
[2025-11-21 03:59:37] 2025-11-21 11:59:37,568 [wrapper] Test setup, not cleaning
[2025-11-21 03:59:37] 2025-11-21 11:59:37,571 [wrapper] apfmon messages muted
[2025-11-21 03:59:37] 2025-11-21 11:59:37,574 [wrapper] ==== wrapper stdout END ====
[2025-11-21 03:59:37] 2025-11-21 11:59:37,580 [wrapper] ==== wrapper stderr END ====
[2025-11-21 03:59:37]  *** Error codes and diagnostics ***
[2025-11-21 03:59:37]     "exeErrorCode": 65,
[2025-11-21 03:59:37]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 03:59:37]     "pilotErrorCode": 1305,
[2025-11-21 03:59:37]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 03:59:37]  *** Listing of results directory ***
[2025-11-21 03:59:37] total 405588
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc    576529 Nov 20 21:09 pilot3.tar.gz
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc      5112 Nov 20 21:12 queuedata.json
[2025-11-21 03:59:37] -rwx------. 1 boinc boinc     36292 Nov 20 21:12 runpilot2-wrapper.sh
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc       100 Nov 21 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 03:59:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 03:55 run_atlas
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc       105 Nov 21 03:55 job.xml
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc      6595 Nov 21 03:55 init_data.xml
[2025-11-21 03:59:37] -rw-r--r--. 2 boinc boinc 411119796 Nov 21 03:55 EVNT.47493127._002225.pool.root.1
[2025-11-21 03:59:37] -rw-r--r--. 2 boinc boinc    590103 Nov 21 03:55 input.tar.gz
[2025-11-21 03:59:37] -rw-r--r--. 2 boinc boinc     15847 Nov 21 03:55 start_atlas.sh
[2025-11-21 03:59:37] drwxrwx--x. 2 boinc boinc      4096 Nov 21 03:55 shared
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc         0 Nov 21 03:55 boinc_lockfile
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc      2786 Nov 21 03:55 pandaJob.out
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc    989817 Nov 21 03:55 agis_schedconf.cvmfs.json
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc   1526164 Nov 21 03:55 agis_ddmendpoints.agis.ALL.json
[2025-11-21 03:59:37] drwx------. 5 boinc boinc      4096 Nov 21 03:55 pilot3
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc       524 Nov 21 03:56 boinc_task_state.xml
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc      1000 Nov 21 03:56 memory_monitor_summary.json
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc     48483 Nov 21 03:56 log.47533967._001962.job.log.tgz.1
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc     10335 Nov 21 03:59 heartbeat.json
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc      8192 Nov 21 03:59 boinc_mmap_file
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc        23 Nov 21 03:59 wrapper_checkpoint.txt
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc        95 Nov 21 03:59 pilot_heartbeat.json
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc       823 Nov 21 03:59 pilotlog.txt
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc     96372 Nov 21 03:59 log.47533967._001962.job.log.1
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc       186 Nov 21 03:59 output.list
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc       620 Nov 21 03:59 runtime_log
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc    163840 Nov 21 03:59 result.tar.gz
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc      8636 Nov 21 03:59 runtime_log.err
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc       646 Nov 21 03:59 RLCMDmYcYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmELHKDmEpmFcm.diag
[2025-11-21 03:59:37] -rw-r--r--. 1 boinc boinc     22477 Nov 21 03:59 stderr.txt
[2025-11-21 03:59:37] No HITS result produced
[2025-11-21 03:59:37]  *** Contents of shared directory: ***
[2025-11-21 03:59:37] total 402248
[2025-11-21 03:59:37] -rw-r--r--. 2 boinc boinc 411119796 Nov 21 03:55 ATLAS.root_0
[2025-11-21 03:59:37] -rw-r--r--. 2 boinc boinc    590103 Nov 21 03:55 input.tar.gz
[2025-11-21 03:59:37] -rw-r--r--. 2 boinc boinc     15847 Nov 21 03:55 start_atlas.sh
[2025-11-21 03:59:37] -rw-------. 1 boinc boinc    163840 Nov 21 03:59 result.tar.gz
03:59:39 (3652208): run_atlas exited; CPU time 65.070488
03:59:39 (3652208): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN