Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:47:29 (2305554): wrapper (7.7.26015): starting
12:47:29 (2305554): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 12:47:29] Arguments: --nthreads 3
[2025-11-21 12:47:29] Threads: 3
[2025-11-21 12:47:29] Checking for CVMFS
[2025-11-21 12:47:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:47:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:47:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:47:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:47:30] 2.9.2.0 16720 1374 72120 153124 0 88 34517494 36864000 0 130560 0 19482116 99.999 38868 1607 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 12:47:30] CVMFS is ok
[2025-11-21 12:47:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 12:47:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 12:47:30] Further information can be found at the LHC@home message board.
[2025-11-21 12:47:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:47:30] Checking for apptainer binary...
[2025-11-21 12:47:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:47:30] Running /usr/bin/apptainer --version
[2025-11-21 12:47:30] apptainer version 1.4.1-1.1
[2025-11-21 12:47:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:47:30] thA335
[2025-11-21 12:47:30] apptainer works
[2025-11-21 12:47:30] Set ATHENA_PROC_NUMBER=3
[2025-11-21 12:47:30] Set ATHENA_CORE_NUMBER=3
[2025-11-21 12:47:30] Starting ATLAS job with PandaID=6893886566
[2025-11-21 12:47:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:51:45]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:51:45] 2025-11-21 11:50:53,089 | INFO     | cat /etc/os-release:
[2025-11-21 12:51:45] NAME="CentOS Linux"
[2025-11-21 12:51:45] VERSION="7 (Core)"
[2025-11-21 12:51:45] ID="centos"
[2025-11-21 12:51:45] ID_LIKE="rhel fedora"
[2025-11-21 12:51:45] VERSION_ID="7"
[2025-11-21 12:51:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 12:51:45] ANSI_COLOR="0;31"
[2025-11-21 12:51:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 12:51:45] HOME_URL="https://www.centos.org/"
[2025-11-21 12:51:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 12:51:45] 
[2025-11-21 12:51:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 12:51:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 12:51:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 12:51:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 12:51:45] 
[2025-11-21 12:51:45] 2025-11-21 11:50:53,090 | INFO     | ***************************************
[2025-11-21 12:51:45] 2025-11-21 11:50:53,593 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 12:51:45] 2025-11-21 11:50:53,607 | INFO     | sufficient remaining disk space (827113603072 B)
[2025-11-21 12:51:45] 2025-11-21 11:50:53,607 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:51:45] 2025-11-21 11:50:53,607 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:51:45] 2025-11-21 11:50:53,607 | INFO     | update_server=False
[2025-11-21 12:51:45] 2025-11-21 11:50:53,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:51:45] 2025-11-21 11:50:53,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:51:45] 2025-11-21 11:50:53,608 | INFO     | aborting loop
[2025-11-21 12:51:45] 2025-11-21 11:50:53,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:51:45] 2025-11-21 11:50:53,676 | INFO     | all job control threads have been joined
[2025-11-21 12:51:45] 2025-11-21 11:50:53,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:51:45] 2025-11-21 11:50:54,481 | INFO     | all data control threads have been joined
[2025-11-21 12:51:45] 2025-11-21 11:50:54,613 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:54,614 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:54,614 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:54,682 | INFO     | [job] control thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:54,779 | INFO     | all payload control threads have been joined
[2025-11-21 12:51:45] 2025-11-21 11:50:55,115 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,406 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,487 | INFO     | [data] control thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,562 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,711 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,785 | INFO     | [payload] control thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,786 | INFO     | [job] validate thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,865 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,937 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:55,974 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:56,108 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:50:56,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:51:45] 2025-11-21 11:51:00,461 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:51:45] 2025-11-21 11:51:23,880 | INFO     | PID=2309277 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 12:51:45] 2025-11-21 11:51:23,881 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:51:45] 2025-11-21 11:51:23,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:51:45] 2025-11-21 11:51:23,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:51:45] 2025-11-21 11:51:38,996 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:51:45] 2025-11-21 11:51:40,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963258115904)>', '<ExcThread(monitor, started 139962632623872)>']
[2025-11-21 12:51:45] 2025-11-21 11:51:40,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:51:45] 2025-11-21 11:51:40,971 | INFO     | [monitor] control thread has ended
[2025-11-21 12:51:45] 2025-11-21 11:51:45,249 | INFO     | all workflow threads have been joined
[2025-11-21 12:51:45] 2025-11-21 11:51:45,250 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:51:45] 2025-11-21 11:51:45,250 | INFO     | traces error code: 0
[2025-11-21 12:51:45] 2025-11-21 11:51:45,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:51:45] 2025-11-21 11:51:45,296 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:51:45] 2025-11-21 11:51:45,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:51:45] 2025-11-21 11:51:45,302 [wrapper] pilotpid: 2309277
[2025-11-21 12:51:45] 2025-11-21 11:51:45,304 [wrapper] Pilot exit status: 0
[2025-11-21 12:51:45] 2025-11-21 11:51:45,312 [wrapper] pandaids: 6893886566
[2025-11-21 12:51:45] 2025-11-21 11:51:45,329 [wrapper] cleanup supervisor_pilot 2309283 2309278
[2025-11-21 12:51:45] 2025-11-21 11:51:45,332 [wrapper] Test setup, not cleaning
[2025-11-21 12:51:45] 2025-11-21 11:51:45,334 [wrapper] apfmon messages muted
[2025-11-21 12:51:45] 2025-11-21 11:51:45,337 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:51:45] 2025-11-21 11:51:45,339 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:51:45]  *** Error codes and diagnostics ***
[2025-11-21 12:51:45]     "exeErrorCode": 65,
[2025-11-21 12:51:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 12:51:45]     "pilotErrorCode": 1305,
[2025-11-21 12:51:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 12:51:45]  *** Listing of results directory ***
[2025-11-21 12:51:45] total 406448
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc    576529 Nov 20 23:26 pilot3.tar.gz
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc      5112 Nov 20 23:44 queuedata.json
[2025-11-21 12:51:45] -rwx------ 1 boinc boinc     36292 Nov 20 23:47 runpilot2-wrapper.sh
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc       100 Nov 21 12:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:51:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 12:47 run_atlas
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc       105 Nov 21 12:47 job.xml
[2025-11-21 12:51:45] -rw-r--r-- 2 boinc boinc 412012087 Nov 21 12:47 EVNT.47493127._000957.pool.root.1
[2025-11-21 12:51:45] -rw-r--r-- 2 boinc boinc    590102 Nov 21 12:47 input.tar.gz
[2025-11-21 12:51:45] -rw-r--r-- 2 boinc boinc     15847 Nov 21 12:47 start_atlas.sh
[2025-11-21 12:51:45] drwxrwx--x 2 boinc boinc      4096 Nov 21 12:47 shared
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc         0 Nov 21 12:47 boinc_setup_complete
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc      6194 Nov 21 12:47 init_data.xml
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc         0 Nov 21 12:47 boinc_lockfile
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc      2786 Nov 21 12:47 pandaJob.out
[2025-11-21 12:51:45] -rw------- 1 boinc boinc    989817 Nov 21 12:47 agis_schedconf.cvmfs.json
[2025-11-21 12:51:45] -rw------- 1 boinc boinc   1526164 Nov 21 12:47 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:51:45] drwx------ 5 boinc boinc      4096 Nov 21 12:47 pilot3
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc       524 Nov 21 12:48 boinc_task_state.xml
[2025-11-21 12:51:45] -rw------- 1 boinc boinc       978 Nov 21 12:48 memory_monitor_summary.json
[2025-11-21 12:51:45] -rw------- 1 boinc boinc     55744 Nov 21 12:48 log.47523449._009566.job.log.tgz.1
[2025-11-21 12:51:45] -rw------- 1 boinc boinc        95 Nov 21 12:50 pilot_heartbeat.json
[2025-11-21 12:51:45] -rw------- 1 boinc boinc      8382 Nov 21 12:50 heartbeat.json
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc      8192 Nov 21 12:51 boinc_mmap_file
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc        23 Nov 21 12:51 wrapper_checkpoint.txt
[2025-11-21 12:51:45] -rw------- 1 boinc boinc      4752 Nov 21 12:51 pilotlog.txt
[2025-11-21 12:51:45] -rw------- 1 boinc boinc     92086 Nov 21 12:51 log.47523449._009566.job.log.1
[2025-11-21 12:51:45] -rw------- 1 boinc boinc       186 Nov 21 12:51 output.list
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc       620 Nov 21 12:51 runtime_log
[2025-11-21 12:51:45] -rw------- 1 boinc boinc    163840 Nov 21 12:51 result.tar.gz
[2025-11-21 12:51:45] -rw------- 1 boinc boinc       649 Nov 21 12:51 wVZNDmJcSg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmydIKDmUWtq7n.diag
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc      8744 Nov 21 12:51 runtime_log.err
[2025-11-21 12:51:45] -rw-r--r-- 1 boinc boinc      9161 Nov 21 12:51 stderr.txt
[2025-11-21 12:51:45] No HITS result produced
[2025-11-21 12:51:45]  *** Contents of shared directory: ***
[2025-11-21 12:51:45] total 403116
[2025-11-21 12:51:45] -rw-r--r-- 2 boinc boinc 412012087 Nov 21 12:47 ATLAS.root_0
[2025-11-21 12:51:45] -rw-r--r-- 2 boinc boinc    590102 Nov 21 12:47 input.tar.gz
[2025-11-21 12:51:45] -rw-r--r-- 2 boinc boinc     15847 Nov 21 12:47 start_atlas.sh
[2025-11-21 12:51:45] -rw------- 1 boinc boinc    163840 Nov 21 12:51 result.tar.gz
12:51:46 (2305554): run_atlas exited; CPU time 31.047255
12:51:46 (2305554): called boinc_finish(0)

</stderr_txt>
]]>

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