Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:54:24 (3634931): wrapper (7.7.26015): starting
12:54:24 (3634931): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 12:54:24] Arguments: --nthreads 4
[2025-11-21 12:54:24] Threads: 4
[2025-11-21 12:54:24] Checking for CVMFS
[2025-11-21 12:54:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:54:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:54:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:54:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:54:25] 2.9.2.0 1896247 4796 95756 153124 3 90 33524780 36864001 0 130560 0 5142641 99.955 462410 6473 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 12:54:25] CVMFS is ok
[2025-11-21 12:54:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 12:54:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 12:54:25] Further information can be found at the LHC@home message board.
[2025-11-21 12:54:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:54:25] Checking for apptainer binary...
[2025-11-21 12:54:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:54:25] Running /usr/bin/apptainer --version
[2025-11-21 12:54:25] apptainer version 1.4.1-1.1
[2025-11-21 12:54:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:54:25] cosA131
[2025-11-21 12:54:25] apptainer works
[2025-11-21 12:54:25] Set ATHENA_PROC_NUMBER=4
[2025-11-21 12:54:25] Set ATHENA_CORE_NUMBER=4
[2025-11-21 12:54:25] Starting ATLAS job with PandaID=6893878590
[2025-11-21 12:54:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 13:04:40]  *** The last 200 lines of the pilot log: ***
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | WARNING  | wrong length of table data, x=[1763726097.0, 1763726158.0, 1763726219.0, 1763726280.0, 1763726341.0, 1763726402.0, 1763726463.0], y=[2564.0, 838188.0, 1050950.0, 1
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | could have reported an average CPU frequency of 3581 MHz (4 samples)
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | ..............................
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . Timing measurements:
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . get job = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . initial setup = 1 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . payload setup = 4 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . stage-in = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . payload execution = 406 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . stage-out = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . log creation = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | ..............................
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893878590/pilotlog.txt
[2025-11-21 13:04:40] 2025-11-21 12:03:43,924 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 13:04:40] - Log from pilotlog.txt -
[2025-11-21 13:04:40] 2025-11-21 12:03:43,904 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 13:04:40] 2025-11-21 12:03:43,906 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3320.3550624999993
[2025-11-21 13:04:40] 2025-11-21 12:03:43,907 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893878590/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | INFO     | extracted standard info from prmon json
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | WARNING  | wrong length of table data, x=[1763726097.0, 1763726158.0, 1763726219.0, 1763726280.0, 1763726341.0, 1763726402.0, 1763726463.0], y=[2564.0, 838188.0, 1050950.0, 1
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | could have reported an average CPU frequency of 3581 MHz (4 samples)
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | ..............................
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . Timing measurements:
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . get job = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . initial setup = 1 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . payload setup = 4 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . stage-in = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . payload execution = 406 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . stage-out = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . log creation = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | ..............................
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893878590/pilotlog.txt
[2025-11-21 13:04:40] 2025-11-21 12:03:43,924 | WARNING  | 
[2025-11-21 13:04:40] [begin log extracts]
[2025-11-21 13:04:40] - Log from pilotlog.txt -
[2025-11-21 13:04:40] 2025-11-21 12:03:43,904 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 13:04:40] 2025-11-21 12:03:43,906 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3320.3550624999993
[2025-11-21 13:04:40] 2025-11-21 12:03:43,907 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893878590/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | INFO     | extracted standard info from prmon json
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 13:04:40] 2025-11-21 12:03:43,908 | WARNING  | wrong length of table data, x=[1763726097.0, 1763726158.0, 1763726219.0, 1763726280.0, 1763726341.0, 1763726402.0, 1763726463.0], y=[2564.0, 838188.0, 1050950.0, 1
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | could have reported an average CPU frequency of 3581 MHz (4 samples)
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | ..............................
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . Timing measurements:
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . get job = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . initial setup = 1 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . payload setup = 4 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . stage-in = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . payload execution = 406 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . stage-out = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | . log creation = 0 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | ..............................
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 13:04:40] 2025-11-21 12:03:43,909 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893878590/pilotlog.txt
[2025-11-21 13:04:40] [end log extracts]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,924 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 13:04:40] 2025-11-21 12:03:43,925 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | 
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | job summary report
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | --------------------------------------------------
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | PanDA job id: 6893878590
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | task id: 47523449
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 12:01:35,756 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | pilot state: failed 
[2025-11-21 13:04:40] 2025-11-21 12:03:43,965 | INFO     | transexitcode: 65
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | exeerrorcode: 65
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 144332001; Curre
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | exitcode: 65
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 144332001; Current al
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | cpuconsumptiontime: 90 s
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | nevents: 0
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | neventsw: 0
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | pid: 3645314
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | pgrp: 3645314
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | corecount: 4
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | event service: False
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | sizes: {0: 2298708, 4: 2298970, 11: 2298998, 415: 2329302, 416: 2329302, 537: 2329548}
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | --------------------------------------------------
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | 
[2025-11-21 13:04:40] 2025-11-21 12:03:43,966 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-21 13:04:40] 2025-11-21 12:03:43,986 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,986 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | job 6893878590 has completed (purged errors)
[2025-11-21 13:04:40] 2025-11-21 12:03:43,987 | INFO     | overall cleanup function is called
[2025-11-21 13:04:40] 2025-11-21 12:03:44,994 | INFO     | --- collectZombieJob: --- 10, [3645314]
[2025-11-21 13:04:40] 2025-11-21 12:03:44,994 | INFO     | zombie collector waiting for pid 3645314
[2025-11-21 13:04:40] 2025-11-21 12:03:44,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 13:04:40] 2025-11-21 12:03:44,994 | INFO     | collected zombie processes
[2025-11-21 13:04:40] 2025-11-21 12:03:44,994 | INFO     | will attempt to kill all subprocesses of pid=3645314
[2025-11-21 13:04:40] 2025-11-21 12:03:45,048 | INFO     | process IDs to be killed: [3645314] (in reverse order)
[2025-11-21 13:04:40] 2025-11-21 12:03:45,085 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 13:04:40] 2025-11-21 12:03:45,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 13:04:40] 2025-11-21 12:03:45,088 | INFO     | did not find any defunct processes belonging to 3645314
[2025-11-21 13:04:40] 2025-11-21 12:03:45,089 | INFO     | did not find any defunct processes belonging to 3645314
[2025-11-21 13:04:40] 2025-11-21 12:03:45,090 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 13:04:40] 2025-11-21 12:03:45,090 | INFO     | ready for new job
[2025-11-21 13:04:40] 2025-11-21 12:03:45,090 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 13:04:40] 2025-11-21 12:03:45,091 | INFO     | ***************************************
[2025-11-21 13:04:40] 2025-11-21 12:03:45,091 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 13:04:40] 2025-11-21 12:03:45,091 | INFO     | ***************************************
[2025-11-21 13:04:40] 2025-11-21 12:03:45,091 | INFO     | 
[2025-11-21 13:04:40] 2025-11-21 12:03:45,091 | INFO     | architecture information:
[2025-11-21 13:04:40] 2025-11-21 12:03:45,092 | INFO     | executing command: cat /etc/os-release
[2025-11-21 13:04:40] 2025-11-21 12:03:45,107 | INFO     | cat /etc/os-release:
[2025-11-21 13:04:40] NAME="CentOS Linux"
[2025-11-21 13:04:40] VERSION="7 (Core)"
[2025-11-21 13:04:40] ID="centos"
[2025-11-21 13:04:40] ID_LIKE="rhel fedora"
[2025-11-21 13:04:40] VERSION_ID="7"
[2025-11-21 13:04:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 13:04:40] ANSI_COLOR="0;31"
[2025-11-21 13:04:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 13:04:40] HOME_URL="https://www.centos.org/"
[2025-11-21 13:04:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 13:04:40] 
[2025-11-21 13:04:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 13:04:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 13:04:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 13:04:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 13:04:40] 
[2025-11-21 13:04:40] 2025-11-21 12:03:45,107 | INFO     | ***************************************
[2025-11-21 13:04:40] 2025-11-21 12:03:45,610 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 13:04:40] 2025-11-21 12:03:45,629 | INFO     | sufficient remaining disk space (326957531136 B)
[2025-11-21 13:04:40] 2025-11-21 12:03:45,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 13:04:40] 2025-11-21 12:03:45,629 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 13:04:40] 2025-11-21 12:03:45,629 | INFO     | update_server=False
[2025-11-21 13:04:40] 2025-11-21 12:03:45,629 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 13:04:40] 2025-11-21 12:03:45,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:04:40] 2025-11-21 12:03:45,639 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 13:04:40] 2025-11-21 12:03:45,640 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 13:04:40] 2025-11-21 12:03:45,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:04:40] 2025-11-21 12:03:45,640 | INFO     | will abort loop
[2025-11-21 13:04:40] 2025-11-21 12:03:45,812 | INFO     | all data control threads have been joined
[2025-11-21 13:04:40] 2025-11-21 12:03:45,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 13:04:40] 2025-11-21 12:03:46,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 13:04:40] 2025-11-21 12:03:46,375 | INFO     | all payload control threads have been joined
[2025-11-21 13:04:40] 2025-11-21 12:03:46,635 | INFO     | [job] retrieve thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:46,635 | INFO     | [job] queue monitor thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:46,645 | INFO     | [job] job monitor thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:46,699 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:46,818 | INFO     | [data] control thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:46,829 | INFO     | all job control threads have been joined
[2025-11-21 13:04:40] 2025-11-21 12:03:46,841 | INFO     | [data] copytool_in thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:46,907 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:46,961 | INFO     | [payload] failed_post thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:47,094 | INFO     | [payload] validate_post thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:47,381 | INFO     | [payload] control thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:47,561 | INFO     | [job] validate thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:47,656 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:47,760 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:47,834 | INFO     | [job] control thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:47,895 | INFO     | [data] copytool_out thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:03:50,345 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 13:04:40] 2025-11-21 12:04:16,241 | INFO     | PID=3638735 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 13:04:40] 2025-11-21 12:04:16,241 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 13:04:40] 2025-11-21 12:04:16,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 13:04:40] 2025-11-21 12:04:16,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 13:04:40] 2025-11-21 12:04:33,553 | INFO     | [monitor] cgroup control has ended
[2025-11-21 13:04:40] 2025-11-21 12:04:35,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139817340823360)>', '<ExcThread(monitor, started 139816301729536)>']
[2025-11-21 13:04:40] 2025-11-21 12:04:36,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 13:04:40] 2025-11-21 12:04:36,340 | INFO     | [monitor] control thread has ended
[2025-11-21 13:04:40] 2025-11-21 12:04:40,561 | INFO     | all workflow threads have been joined
[2025-11-21 13:04:40] 2025-11-21 12:04:40,561 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 13:04:40] 2025-11-21 12:04:40,561 | INFO     | traces error code: 0
[2025-11-21 13:04:40] 2025-11-21 12:04:40,562 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 13:04:40] 2025-11-21 12:04:40,642 [wrapper] ==== pilot stdout END ====
[2025-11-21 13:04:40] 2025-11-21 12:04:40,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 13:04:40] 2025-11-21 12:04:40,650 [wrapper] pilotpid: 3638735
[2025-11-21 13:04:40] 2025-11-21 12:04:40,654 [wrapper] Pilot exit status: 0
[2025-11-21 13:04:40] 2025-11-21 12:04:40,666 [wrapper] pandaids: 6893878590
[2025-11-21 13:04:40] 2025-11-21 12:04:40,692 [wrapper] cleanup supervisor_pilot 3638741 3638736
[2025-11-21 13:04:40] 2025-11-21 12:04:40,696 [wrapper] Test setup, not cleaning
[2025-11-21 13:04:40] 2025-11-21 12:04:40,700 [wrapper] apfmon messages muted
[2025-11-21 13:04:40] 2025-11-21 12:04:40,705 [wrapper] ==== wrapper stdout END ====
[2025-11-21 13:04:40] 2025-11-21 12:04:40,709 [wrapper] ==== wrapper stderr END ====
[2025-11-21 13:04:40]  *** Error codes and diagnostics ***
[2025-11-21 13:04:40]     "exeErrorCode": 65,
[2025-11-21 13:04:40]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 144332001; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2025-11-21 13:04:40]     "pilotErrorCode": 1305,
[2025-11-21 13:04:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 144332001; Current algorit",
[2025-11-21 13:04:40]  *** Listing of results directory ***
[2025-11-21 13:04:40] total 403324
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-21 13:04:40] -rwx------ 1 boinc boinc     36292 Nov 20 19:45 runpilot2-wrapper.sh
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc      5112 Nov 20 19:45 queuedata.json
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc       100 Nov 21 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 13:04:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 12:54 run_atlas
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc       105 Nov 21 12:54 job.xml
[2025-11-21 13:04:40] -rw-r--r-- 2 boinc boinc 408034089 Nov 21 12:54 EVNT.47493127._000805.pool.root.1
[2025-11-21 13:04:40] -rw-r--r-- 2 boinc boinc    590098 Nov 21 12:54 input.tar.gz
[2025-11-21 13:04:40] -rw-r--r-- 2 boinc boinc     15847 Nov 21 12:54 start_atlas.sh
[2025-11-21 13:04:40] drwxrwx--x 2 boinc boinc      4096 Nov 21 12:54 shared
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc         0 Nov 21 12:54 boinc_setup_complete
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc      6379 Nov 21 12:54 init_data.xml
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc         0 Nov 21 12:54 boinc_lockfile
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc      2784 Nov 21 12:54 pandaJob.out
[2025-11-21 13:04:40] -rw------- 1 boinc boinc    989817 Nov 21 12:54 agis_schedconf.cvmfs.json
[2025-11-21 13:04:40] -rw------- 1 boinc boinc   1526164 Nov 21 12:54 agis_ddmendpoints.agis.ALL.json
[2025-11-21 13:04:40] drwx------ 5 boinc boinc      4096 Nov 21 12:54 pilot3
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc       527 Nov 21 13:01 boinc_task_state.xml
[2025-11-21 13:04:40] -rw------- 1 boinc boinc      1010 Nov 21 13:01 memory_monitor_summary.json
[2025-11-21 13:04:40] -rw------- 1 boinc boinc    385628 Nov 21 13:01 log.47523449._008043.job.log.tgz.1
[2025-11-21 13:04:40] -rw------- 1 boinc boinc        95 Nov 21 13:03 pilot_heartbeat.json
[2025-11-21 13:04:40] -rw------- 1 boinc boinc     10207 Nov 21 13:03 heartbeat.json
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc      8192 Nov 21 13:04 boinc_mmap_file
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc        24 Nov 21 13:04 wrapper_checkpoint.txt
[2025-11-21 13:04:40] -rw------- 1 boinc boinc      4938 Nov 21 13:04 pilotlog.txt
[2025-11-21 13:04:40] -rw------- 1 boinc boinc    139916 Nov 21 13:04 log.47523449._008043.job.log.1
[2025-11-21 13:04:40] -rw------- 1 boinc boinc       186 Nov 21 13:04 output.list
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc       620 Nov 21 13:04 runtime_log
[2025-11-21 13:04:40] -rw------- 1 boinc boinc    542720 Nov 21 13:04 result.tar.gz
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc      8749 Nov 21 13:04 runtime_log.err
[2025-11-21 13:04:40] -rw------- 1 boinc boinc       651 Nov 21 13:04 6VDMDmIqOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdxGKDmtKJXDn.diag
[2025-11-21 13:04:40] -rw-r--r-- 1 boinc boinc     22748 Nov 21 13:04 stderr.txt
[2025-11-21 13:04:40] No HITS result produced
[2025-11-21 13:04:40]  *** Contents of shared directory: ***
[2025-11-21 13:04:40] total 399604
[2025-11-21 13:04:40] -rw-r--r-- 2 boinc boinc 408034089 Nov 21 12:54 ATLAS.root_0
[2025-11-21 13:04:40] -rw-r--r-- 2 boinc boinc    590098 Nov 21 12:54 input.tar.gz
[2025-11-21 13:04:40] -rw-r--r-- 2 boinc boinc     15847 Nov 21 12:54 start_atlas.sh
[2025-11-21 13:04:40] -rw------- 1 boinc boinc    542720 Nov 21 13:04 result.tar.gz
13:04:42 (3634931): run_atlas exited; CPU time 82.016168
13:04:42 (3634931): called boinc_finish(0)

</stderr_txt>
]]>

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