Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:37:28 (1394790): wrapper (7.7.26015): starting
06:37:28 (1394790): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 06:37:28] Arguments: --nthreads 8
[2025-11-21 06:37:28] Threads: 8
[2025-11-21 06:37:28] Checking for CVMFS
[2025-11-21 06:37:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 06:37:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 06:37:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 06:37:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 06:37:29] 2.13.3.0 14106 22750 200924 153124 0 174 32098224 40960001 23454 16776704 0 263256171 99.760 160186434 47452 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 06:37:29] CVMFS is ok
[2025-11-21 06:37:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 06:37:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 06:37:29] Further information can be found at the LHC@home message board.
[2025-11-21 06:37:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 06:37:29] Checking for apptainer binary...
[2025-11-21 06:37:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 06:37:29] Running /usr/bin/apptainer --version
[2025-11-21 06:37:29] apptainer version 1.4.4-1.el9
[2025-11-21 06:37:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 06:37:29] c8-7-5.aglt2.org
[2025-11-21 06:37:29] apptainer works
[2025-11-21 06:37:29] Set ATHENA_PROC_NUMBER=8
[2025-11-21 06:37:29] Set ATHENA_CORE_NUMBER=8
[2025-11-21 06:37:30] Starting ATLAS job with PandaID=6893877084
[2025-11-21 06:37:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:10:43]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:10:43] 2025-11-21 17:09:34,156 | INFO     | monitor loop #1286: job 0:6893877084 is in state 'finished'
[2025-11-21 12:10:43] 2025-11-21 17:09:34,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:10:43] 2025-11-21 17:09:34,904 | INFO     | time since job start (19895s) is within the limit (172800.0s)
[2025-11-21 12:10:43] 2025-11-21 17:09:36,797 | INFO     | monitor loop #1287: job 0:6893877084 is in state 'finished'
[2025-11-21 12:10:43] 2025-11-21 17:09:36,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:10:43] 2025-11-21 17:09:39,132 | INFO     | PID=1403537 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 12:10:43] 2025-11-21 17:09:39,132 | INFO     | .. there are 53 such processes running
[2025-11-21 12:10:43] 2025-11-21 17:09:39,308 | INFO     | monitor loop #1288: job 0:6893877084 is in state 'finished'
[2025-11-21 12:10:43] 2025-11-21 17:09:39,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:10:43] 2025-11-21 17:09:40,220 | INFO     | time since job start (19901s) is within the limit (172800.0s)
[2025-11-21 12:10:43] 2025-11-21 17:09:41,815 | INFO     | monitor loop #1289: job 0:6893877084 is in state 'finished'
[2025-11-21 12:10:43] 2025-11-21 17:09:41,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:10:43] 2025-11-21 17:09:42,255 | INFO     | time since job start (19903s) is within the limit (172800.0s)
[2025-11-21 12:10:43] 2025-11-21 17:09:44,267 | INFO     | time since job start (19905s) is within the limit (172800.0s)
[2025-11-21 12:10:43] 2025-11-21 17:09:44,323 | INFO     | monitor loop #1290: job 0:6893877084 is in state 'finished'
[2025-11-21 12:10:43] 2025-11-21 17:09:44,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:10:43] 2025-11-21 17:09:45,647 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 12:10:43] 2025-11-21 17:09:45,660 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.99528125
[2025-11-21 12:10:43] 2025-11-21 17:09:45,801 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6893877084/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 12:10:43] 2025-11-21 17:09:45,802 | INFO     | extracted standard info from prmon json
[2025-11-21 12:10:43] 2025-11-21 17:09:45,802 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 12:10:43] 2025-11-21 17:09:45,802 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 12:10:43] 2025-11-21 17:09:45,833 | INFO     | fitting pss+swap vs Time
[2025-11-21 12:10:43] 2025-11-21 17:09:45,833 | INFO     | sum of square deviations: 10545899895.99992
[2025-11-21 12:10:43] 2025-11-21 17:09:45,835 | INFO     | sum of deviations: -250308066396.22217
[2025-11-21 12:10:43] 2025-11-21 17:09:45,835 | INFO     | mean x: 1763735045.8888888
[2025-11-21 12:10:43] 2025-11-21 17:09:45,835 | INFO     | mean y: 2688870.0216049384
[2025-11-21 12:10:43] 2025-11-21 17:09:45,835 | INFO     | intersect: 41865129565.021286
[2025-11-21 12:10:43] 2025-11-21 17:09:45,835 | INFO     | chi2: 21.640270416782624
[2025-11-21 12:10:43] 2025-11-21 17:09:45,835 | INFO     | sum of square deviations: 10065166520.231987
[2025-11-21 12:10:43] 2025-11-21 17:09:45,841 | INFO     | sum of deviations: -150470634076.42944
[2025-11-21 12:10:43] 2025-11-21 17:09:45,841 | INFO     | mean x: 1763734893.3949842
[2025-11-21 12:10:43] 2025-11-21 17:09:45,841 | INFO     | mean y: 2720559.106583072
[2025-11-21 12:10:43] 2025-11-21 17:09:45,841 | INFO     | intersect: 26369925435.2908
[2025-11-21 12:10:43] 2025-11-21 17:09:45,841 | INFO     | chi2: 17.852996901930776
[2025-11-21 12:10:43] 2025-11-21 17:09:45,841 | INFO     | current chi2=17.852996901930776 (change=17.501045236083154 %)
[2025-11-21 12:10:43] 2025-11-21 17:09:45,842 | INFO     | right removable region: 318
[2025-11-21 12:10:43] 2025-11-21 17:09:45,842 | INFO     | sum of square deviations: 10065109180.018854
[2025-11-21 12:10:43] 2025-11-21 17:09:45,843 | INFO     | sum of deviations: -340834172386.7398
[2025-11-21 12:10:43] 2025-11-21 17:09:45,843 | INFO     | mean x: 1763735198.3918495
[2025-11-21 12:10:43] 2025-11-21 17:09:45,843 | INFO     | mean y: 2717480.2539184955
[2025-11-21 12:10:43] 2025-11-21 17:09:45,843 | INFO     | intersect: 59727973898.39864
[2025-11-21 12:10:43] 2025-11-21 17:09:45,848 | INFO     | chi2: 19.108771200574015
[2025-11-21 12:10:43] 2025-11-21 17:09:45,848 | INFO     | current chi2=19.108771200574015 (change=11.698094189457823 %)
[2025-11-21 12:10:43] 2025-11-21 17:09:45,848 | INFO     | left removable region: 10
[2025-11-21 12:10:43] 2025-11-21 17:09:45,848 | INFO     | sum of square deviations: 9059395833.464224
[2025-11-21 12:10:43] 2025-11-21 17:09:45,850 | INFO     | sum of deviations: -233356739092.00003
[2025-11-21 12:10:43] 2025-11-21 17:09:45,850 | INFO     | mean x: 1763735167.892857
[2025-11-21 12:10:43] 2025-11-21 17:09:45,850 | INFO     | mean y: 2762281.6363636362
[2025-11-21 12:10:43] 2025-11-21 17:09:45,850 | INFO     | intersect: 45433991357.75615
[2025-11-21 12:10:43] 2025-11-21 17:09:45,850 | INFO     | chi2: 14.342980311008425
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | current memory leak: -25.76 B/s (using 308 data points, chi2=14.34)
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | could have reported an average CPU frequency of 3799 MHz (14 samples)
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | ..............................
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | . Timing measurements:
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | . get job = 0 s
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | . initial setup = 3 s
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | . payload setup = 35 s
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | . stage-in = 0 s
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | . payload execution = 19769 s
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | . stage-out = 7 s
[2025-11-21 12:10:43] 2025-11-21 17:09:45,851 | INFO     | . log creation = 2 s
[2025-11-21 12:10:43] 2025-11-21 17:09:45,852 | INFO     | ..............................
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | 
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | job summary report
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | --------------------------------------------------
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | PanDA job id: 6893877084
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | task id: 47523449
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | errors: (none)
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | pilot state: finished 
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | transexitcode: 0
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | exeerrorcode: 0
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | exeerrordiag: 
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | exitcode: 0
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | exitmsg: OK
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | cpuconsumptiontime: 127324 s
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | nevents: 1000
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | neventsw: 0
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | pid: 1437914
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | pgrp: 1437914
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | corecount: 8
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | event service: False
[2025-11-21 12:10:43] 2025-11-21 17:09:46,093 | INFO     | sizes: {0: 2298699, 11: 2298699, 18: 2298989, 22: 2299017, 19809: 2333347, 19817: 2342341, 19818: 2342525, 19860: 2342771}
[2025-11-21 12:10:43] 2025-11-21 17:09:46,094 | INFO     | --------------------------------------------------
[2025-11-21 12:10:43] 2025-11-21 17:09:46,094 | INFO     | 
[2025-11-21 12:10:43] 2025-11-21 17:09:46,094 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-21 12:10:43] 2025-11-21 17:09:46,288 | INFO     | time since job start (19907s) is within the limit (172800.0s)
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,490 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,491 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 12:10:43] 2025-11-21 17:09:46,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,491 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 12:10:43] 2025-11-21 17:09:46,491 | INFO     | job 6893877084 has completed (purged errors)
[2025-11-21 12:10:43] 2025-11-21 17:09:46,491 | INFO     | overall cleanup function is called
[2025-11-21 12:10:43] 2025-11-21 17:09:47,529 | INFO     | --- collectZombieJob: --- 10, [1437914]
[2025-11-21 12:10:43] 2025-11-21 17:09:47,529 | INFO     | zombie collector waiting for pid 1437914
[2025-11-21 12:10:43] 2025-11-21 17:09:47,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 12:10:43] 2025-11-21 17:09:47,529 | INFO     | collected zombie processes
[2025-11-21 12:10:43] 2025-11-21 17:09:47,529 | INFO     | will attempt to kill all subprocesses of pid=1437914
[2025-11-21 12:10:43] 2025-11-21 17:09:49,279 | INFO     | process IDs to be killed: [1437914] (in reverse order)
[2025-11-21 12:10:43] 2025-11-21 17:09:50,458 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 12:10:43] 2025-11-21 17:09:50,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 12:10:43] 2025-11-21 17:09:50,558 | INFO     | did not find any defunct processes belonging to 1437914
[2025-11-21 12:10:43] 2025-11-21 17:09:50,592 | INFO     | did not find any defunct processes belonging to 1437914
[2025-11-21 12:10:43] 2025-11-21 17:09:50,604 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 12:10:43] 2025-11-21 17:09:50,605 | INFO     | ready for new job
[2025-11-21 12:10:43] 2025-11-21 17:09:50,605 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 12:10:43] 2025-11-21 17:09:50,607 | INFO     | ***************************************
[2025-11-21 12:10:43] 2025-11-21 17:09:50,607 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 12:10:43] 2025-11-21 17:09:50,607 | INFO     | ***************************************
[2025-11-21 12:10:43] 2025-11-21 17:09:50,607 | INFO     | 
[2025-11-21 12:10:43] 2025-11-21 17:09:50,615 | INFO     | architecture information:
[2025-11-21 12:10:43] 2025-11-21 17:09:50,626 | INFO     | executing command: cat /etc/os-release
[2025-11-21 12:10:43] 2025-11-21 17:09:50,793 | INFO     | cat /etc/os-release:
[2025-11-21 12:10:43] NAME="CentOS Linux"
[2025-11-21 12:10:43] VERSION="7 (Core)"
[2025-11-21 12:10:43] ID="centos"
[2025-11-21 12:10:43] ID_LIKE="rhel fedora"
[2025-11-21 12:10:43] VERSION_ID="7"
[2025-11-21 12:10:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 12:10:43] ANSI_COLOR="0;31"
[2025-11-21 12:10:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 12:10:43] HOME_URL="https://www.centos.org/"
[2025-11-21 12:10:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 12:10:43] 
[2025-11-21 12:10:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 12:10:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 12:10:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 12:10:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 12:10:43] 
[2025-11-21 12:10:43] 2025-11-21 17:09:50,794 | INFO     | ***************************************
[2025-11-21 12:10:43] 2025-11-21 17:09:51,340 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-21 12:10:43] 2025-11-21 17:09:51,535 | INFO     | sufficient remaining disk space (155468169216 B)
[2025-11-21 12:10:43] 2025-11-21 17:09:51,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:10:43] 2025-11-21 17:09:51,536 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:10:43] 2025-11-21 17:09:51,536 | INFO     | update_server=False
[2025-11-21 12:10:43] 2025-11-21 17:09:51,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:10:43] 2025-11-21 17:09:51,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:10:43] 2025-11-21 17:09:51,537 | INFO     | aborting loop
[2025-11-21 12:10:43] 2025-11-21 17:09:51,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:10:43] 2025-11-21 17:09:51,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:10:43] 2025-11-21 17:09:51,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:10:43] 2025-11-21 17:09:52,055 | INFO     | all data control threads have been joined
[2025-11-21 12:10:43] 2025-11-21 17:09:52,141 | INFO     | all job control threads have been joined
[2025-11-21 12:10:43] 2025-11-21 17:09:52,541 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:52,543 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:52,565 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:52,649 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:52,683 | INFO     | all payload control threads have been joined
[2025-11-21 12:10:43] 2025-11-21 17:09:52,969 | INFO     | [job] validate thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:52,990 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,063 | INFO     | [data] control thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,146 | INFO     | [job] control thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,249 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,545 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,557 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,563 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,639 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,646 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:53,689 | INFO     | [payload] control thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:09:55,563 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:10:43] 2025-11-21 17:10:22,745 | INFO     | PID=1403537 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 12:10:43] 2025-11-21 17:10:22,746 | INFO     | .. there are 53 such processes running
[2025-11-21 12:10:43] 2025-11-21 17:10:22,747 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:10:43] 2025-11-21 17:10:22,747 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:10:43] 2025-11-21 17:10:22,747 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:10:43] 2025-11-21 17:10:33,283 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:10:43] 2025-11-21 17:10:35,296 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139726375896896)>', '<ExcThread(monitor, started 139725209855744)>']
[2025-11-21 12:10:43] 2025-11-21 17:10:35,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:10:43] 2025-11-21 17:10:35,851 | INFO     | [monitor] control thread has ended
[2025-11-21 12:10:43] 2025-11-21 17:10:40,343 | INFO     | all workflow threads have been joined
[2025-11-21 12:10:43] 2025-11-21 17:10:40,343 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:10:43] 2025-11-21 17:10:40,343 | INFO     | traces error code: 0
[2025-11-21 12:10:43] 2025-11-21 17:10:40,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:10:43] 2025-11-21 17:10:41,364 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:10:43] 2025-11-21 17:10:41,389 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:10:43] 2025-11-21 17:10:41,677 [wrapper] pilotpid: 1403537
[2025-11-21 12:10:43] 2025-11-21 17:10:41,812 [wrapper] Pilot exit status: 0
[2025-11-21 12:10:43] 2025-11-21 17:10:42,174 [wrapper] pandaids: 6893877084
[2025-11-21 12:10:43] 2025-11-21 17:10:42,515 [wrapper] cleanup supervisor_pilot  929545 1403538
[2025-11-21 12:10:43] 2025-11-21 17:10:42,562 [wrapper] Test setup, not cleaning
[2025-11-21 12:10:43] 2025-11-21 17:10:42,608 [wrapper] apfmon messages muted
[2025-11-21 12:10:43] 2025-11-21 17:10:42,647 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:10:43] 2025-11-21 17:10:42,651 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:10:43]  *** Error codes and diagnostics ***
[2025-11-21 12:10:43]     "exeErrorCode": 0,
[2025-11-21 12:10:43]     "exeErrorDiag": "",
[2025-11-21 12:10:43]     "pilotErrorCode": 0,
[2025-11-21 12:10:43]     "pilotErrorDiag": "",
[2025-11-21 12:10:43]  *** Listing of results directory ***
[2025-11-21 12:10:43] total 1301032
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:52 pilot3.tar.gz
[2025-11-21 12:10:43] -rwx------. 1 boincer umatlas     36292 Nov 20 13:03 runpilot2-wrapper.sh
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 13:03 queuedata.json
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas       100 Nov 21 06:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:10:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 06:37 run_atlas
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas       105 Nov 21 06:37 job.xml
[2025-11-21 12:10:43] -rw-r--r--. 2 boincer umatlas 411540998 Nov 21 06:37 EVNT.47493127._000786.pool.root.1
[2025-11-21 12:10:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 06:37 start_atlas.sh
[2025-11-21 12:10:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 06:37 shared
[2025-11-21 12:10:43] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 06:37 input.tar.gz
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas         0 Nov 21 06:37 boinc_lockfile
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas      2781 Nov 21 06:37 pandaJob.out
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas        57 Nov 21 06:37 setup.sh.local
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas    989817 Nov 21 06:37 agis_schedconf.cvmfs.json
[2025-11-21 12:10:43] drwx------. 5 boincer umatlas      4096 Nov 21 06:37 pilot3
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas       532 Nov 21 11:41 boinc_task_state.xml
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas      7173 Nov 21 12:01 init_data.xml
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas 908225097 Nov 21 12:08 HITS.47523449._007851.pool.root.1
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas      1044 Nov 21 12:08 memory_monitor_summary.json
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas   1526164 Nov 21 12:08 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas   1635332 Nov 21 12:09 log.47523449._007851.job.log.tgz.1
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas        95 Nov 21 12:09 pilot_heartbeat.json
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas      8585 Nov 21 12:09 heartbeat.json
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 12:10 boinc_mmap_file
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas      4825 Nov 21 12:10 pilotlog.txt
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas        29 Nov 21 12:10 wrapper_checkpoint.txt
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas   2648259 Nov 21 12:10 log.47523449._007851.job.log.1
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas       353 Nov 21 12:10 output.list
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas       620 Nov 21 12:10 runtime_log
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas   4300800 Nov 21 12:10 result.tar.gz
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas      9333 Nov 21 12:10 runtime_log.err
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas       658 Nov 21 12:10 J5KODmfBOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpNIKDm80Nl8m.diag
[2025-11-21 12:10:43] -rw-r--r--. 1 boincer umatlas     21857 Nov 21 12:10 stderr.txt
[2025-11-21 12:10:43] HITS file was successfully produced:
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas 908225097 Nov 21 12:08 shared/HITS.pool.root.1
[2025-11-21 12:10:43]  *** Contents of shared directory: ***
[2025-11-21 12:10:43] total 1293640
[2025-11-21 12:10:43] -rw-r--r--. 2 boincer umatlas 411540998 Nov 21 06:37 ATLAS.root_0
[2025-11-21 12:10:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 06:37 start_atlas.sh
[2025-11-21 12:10:43] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 06:37 input.tar.gz
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas 908225097 Nov 21 12:08 HITS.pool.root.1
[2025-11-21 12:10:43] -rw-------. 1 boincer umatlas   4300800 Nov 21 12:10 result.tar.gz
12:10:44 (1394790): run_atlas exited; CPU time 127741.068763
12:10:44 (1394790): called boinc_finish(0)

</stderr_txt>
]]>

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