Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:47:42 (3478256): wrapper (7.7.26015): starting
03:47:42 (3478256): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 03:47:42] Arguments: --nthreads 12
[2025-11-21 03:47:42] Threads: 12
[2025-11-21 03:47:42] Checking for CVMFS
[2025-11-21 03:47:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:47:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:47:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:47:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:47:44] 2.11.5.0 2756331 21102 341372 153124 1 177 28003160 45568001 19566 130560 0 153446617 99.785 93382470 23363 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-21 03:47:44] CVMFS is ok
[2025-11-21 03:47:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 03:47:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 03:47:44] Further information can be found at the LHC@home message board.
[2025-11-21 03:47:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:47:44] Checking for apptainer binary...
[2025-11-21 03:47:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:47:44] Running /usr/bin/apptainer --version
[2025-11-21 03:47:44] apptainer version 1.4.1-1.el9
[2025-11-21 03:47:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:47:45] wns0075.triumf.lcg
[2025-11-21 03:47:45] apptainer works
[2025-11-21 03:47:46] Set ATHENA_PROC_NUMBER=12
[2025-11-21 03:47:46] Set ATHENA_CORE_NUMBER=12
[2025-11-21 03:47:46] Starting ATLAS job with PandaID=6894261653
[2025-11-21 03:47:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 03:55:32]  *** The last 200 lines of the pilot log: ***
[2025-11-21 03:55:32] 2025-11-21 11:54:59,205 | INFO     | could have reported an average CPU frequency of 1371 MHz (4 samples)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,205 | INFO     | ..............................
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . Timing measurements:
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . get job = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . initial setup = 3 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . payload setup = 28 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . stage-in = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . payload execution = 170 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . stage-out = 1 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . log creation = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | ..............................
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 03:55:32] 2025-11-21 11:54:59,207 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894261653/pilotlog.txt
[2025-11-21 03:55:32] 2025-11-21 11:54:59,212 | INFO     | monitor loop #88: job 0:6894261653 is in state 'failed'
[2025-11-21 03:55:32] 2025-11-21 11:54:59,212 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,224 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 03:55:32] - Log from pilotlog.txt -
[2025-11-21 03:55:32] 2025-11-21 11:54:59,203 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 03:55:32] 2025-11-21 11:54:59,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 03:55:32] 2025-11-21 11:54:59,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 03:55:32] 2025-11-21 11:54:59,204 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 03:55:32] 2025-11-21 11:54:59,204 | WARNING  | wrong length of table data, x=[1763725806.0, 1763725867.0, 1763725928.0], y=[2550.0, 612212.0, 569153.0] (must be same and length>=4)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,205 | INFO     | could have reported an average CPU frequency of 1371 MHz (4 samples)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,205 | INFO     | ..............................
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . Timing measurements:
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . get job = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . initial setup = 3 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . payload setup = 28 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . stage-in = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . payload execution = 170 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . stage-out = 1 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . log creation = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | ..............................
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 03:55:32] 2025-11-21 11:54:59,207 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894261653/pilotlog.txt
[2025-11-21 03:55:32] 2025-11-21 11:54:59,212 | INFO     | monitor loop #88: job 0:6894261653 is in state 'failed'
[2025-11-21 03:55:32] 2025-11-21 11:54:59,212 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,224 | WARNING  | 
[2025-11-21 03:55:32] [begin log extracts]
[2025-11-21 03:55:32] - Log from pilotlog.txt -
[2025-11-21 03:55:32] 2025-11-21 11:54:59,203 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 03:55:32] 2025-11-21 11:54:59,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 03:55:32] 2025-11-21 11:54:59,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 03:55:32] 2025-11-21 11:54:59,204 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 03:55:32] 2025-11-21 11:54:59,204 | WARNING  | wrong length of table data, x=[1763725806.0, 1763725867.0, 1763725928.0], y=[2550.0, 612212.0, 569153.0] (must be same and length>=4)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,205 | INFO     | could have reported an average CPU frequency of 1371 MHz (4 samples)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,205 | INFO     | ..............................
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . Timing measurements:
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . get job = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . initial setup = 3 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . payload setup = 28 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . stage-in = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . payload execution = 170 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . stage-out = 1 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | . log creation = 0 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | ..............................
[2025-11-21 03:55:32] 2025-11-21 11:54:59,206 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 03:55:32] 2025-11-21 11:54:59,207 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894261653/pilotlog.txt
[2025-11-21 03:55:32] 2025-11-21 11:54:59,212 | INFO     | monitor loop #88: job 0:6894261653 is in state 'failed'
[2025-11-21 03:55:32] 2025-11-21 11:54:59,212 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-21 03:55:32] [end log extracts]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,225 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,226 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 03:55:32] 2025-11-21 11:54:59,326 | INFO     | 
[2025-11-21 03:55:32] 2025-11-21 11:54:59,327 | INFO     | job summary report
[2025-11-21 03:55:32] 2025-11-21 11:54:59,327 | INFO     | --------------------------------------------------
[2025-11-21 03:55:32] 2025-11-21 11:54:59,327 | INFO     | PanDA job id: 6894261653
[2025-11-21 03:55:32] 2025-11-21 11:54:59,327 | INFO     | task id: 47533967
[2025-11-21 03:55:32] 2025-11-21 11:54:59,327 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 03:52:24,425 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 03:55:32] 2025-11-21 11:54:59,327 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 03:55:32] 2025-11-21 11:54:59,327 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | pilot state: failed 
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | transexitcode: 65
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | exeerrorcode: 65
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | exitcode: 65
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | cpuconsumptiontime: 77 s
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | nevents: 0
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | neventsw: 0
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | pid: 3489001
[2025-11-21 03:55:32] 2025-11-21 11:54:59,328 | INFO     | pgrp: 3489001
[2025-11-21 03:55:32] 2025-11-21 11:54:59,329 | INFO     | corecount: 12
[2025-11-21 03:55:32] 2025-11-21 11:54:59,329 | INFO     | event service: False
[2025-11-21 03:55:32] 2025-11-21 11:54:59,329 | INFO     | sizes: {0: 2298633, 1: 2298832, 13: 2298832, 19: 2299150, 24: 2299178, 203: 2324867, 206: 2329157, 208: 2329213, 348: 2329407}
[2025-11-21 03:55:32] 2025-11-21 11:54:59,329 | INFO     | --------------------------------------------------
[2025-11-21 03:55:32] 2025-11-21 11:54:59,329 | INFO     | 
[2025-11-21 03:55:32] 2025-11-21 11:54:59,329 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 03:55:32] 2025-11-21 11:54:59,351 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,354 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,354 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 03:55:32] 2025-11-21 11:54:59,354 | INFO     | job 6894261653 has completed (purged errors)
[2025-11-21 03:55:32] 2025-11-21 11:54:59,354 | INFO     | overall cleanup function is called
[2025-11-21 03:55:32] 2025-11-21 11:55:00,363 | INFO     | --- collectZombieJob: --- 10, [3489001]
[2025-11-21 03:55:32] 2025-11-21 11:55:00,363 | INFO     | zombie collector waiting for pid 3489001
[2025-11-21 03:55:32] 2025-11-21 11:55:00,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 03:55:32] 2025-11-21 11:55:00,364 | INFO     | collected zombie processes
[2025-11-21 03:55:32] 2025-11-21 11:55:00,364 | INFO     | will attempt to kill all subprocesses of pid=3489001
[2025-11-21 03:55:32] 2025-11-21 11:55:01,053 | INFO     | process IDs to be killed: [3489001] (in reverse order)
[2025-11-21 03:55:32] 2025-11-21 11:55:01,483 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 03:55:32] 2025-11-21 11:55:01,483 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 03:55:32] 2025-11-21 11:55:01,538 | INFO     | did not find any defunct processes belonging to 3489001
[2025-11-21 03:55:32] 2025-11-21 11:55:01,590 | INFO     | did not find any defunct processes belonging to 3489001
[2025-11-21 03:55:32] 2025-11-21 11:55:01,591 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 03:55:32] 2025-11-21 11:55:01,591 | INFO     | ready for new job
[2025-11-21 03:55:32] 2025-11-21 11:55:01,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 03:55:32] 2025-11-21 11:55:01,600 | INFO     | ***************************************
[2025-11-21 03:55:32] 2025-11-21 11:55:01,600 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 03:55:32] 2025-11-21 11:55:01,600 | INFO     | ***************************************
[2025-11-21 03:55:32] 2025-11-21 11:55:01,600 | INFO     | 
[2025-11-21 03:55:32] 2025-11-21 11:55:01,611 | INFO     | architecture information:
[2025-11-21 03:55:32] 2025-11-21 11:55:01,615 | INFO     | executing command: cat /etc/os-release
[2025-11-21 03:55:32] 2025-11-21 11:55:01,662 | INFO     | cat /etc/os-release:
[2025-11-21 03:55:32] NAME="CentOS Linux"
[2025-11-21 03:55:32] VERSION="7 (Core)"
[2025-11-21 03:55:32] ID="centos"
[2025-11-21 03:55:32] ID_LIKE="rhel fedora"
[2025-11-21 03:55:32] VERSION_ID="7"
[2025-11-21 03:55:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 03:55:32] ANSI_COLOR="0;31"
[2025-11-21 03:55:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 03:55:32] HOME_URL="https://www.centos.org/"
[2025-11-21 03:55:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 03:55:32] 
[2025-11-21 03:55:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 03:55:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 03:55:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 03:55:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 03:55:32] 
[2025-11-21 03:55:32] 2025-11-21 11:55:01,662 | INFO     | ***************************************
[2025-11-21 03:55:32] 2025-11-21 11:55:02,165 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 03:55:32] 2025-11-21 11:55:02,262 | INFO     | sufficient remaining disk space (1879237984256 B)
[2025-11-21 03:55:32] 2025-11-21 11:55:02,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 03:55:32] 2025-11-21 11:55:02,263 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 03:55:32] 2025-11-21 11:55:02,263 | INFO     | update_server=False
[2025-11-21 03:55:32] 2025-11-21 11:55:02,263 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 03:55:32] 2025-11-21 11:55:02,315 | INFO     | all data control threads have been joined
[2025-11-21 03:55:32] 2025-11-21 11:55:02,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:55:32] 2025-11-21 11:55:02,738 | INFO     | aborting loop
[2025-11-21 03:55:32] 2025-11-21 11:55:03,269 | INFO     | [job] retrieve thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:03,306 | INFO     | [payload] failed_post thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:03,321 | INFO     | [data] control thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:03,376 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 03:55:32] 2025-11-21 11:55:03,411 | INFO     | all job control threads have been joined
[2025-11-21 03:55:32] 2025-11-21 11:55:03,705 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:03,744 | INFO     | [job] job monitor thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:03,756 | INFO     | all payload control threads have been joined
[2025-11-21 03:55:32] 2025-11-21 11:55:03,781 | INFO     | [payload] validate_post thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:03,849 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:03,960 | INFO     | [job] validate thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:04,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:04,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:55:32] 2025-11-21 11:55:04,417 | INFO     | [job] control thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:04,571 | INFO     | [data] copytool_in thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:04,572 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:04,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 03:55:32] 2025-11-21 11:55:04,762 | INFO     | [payload] control thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:05,354 | INFO     | [job] queue monitor thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:05,383 | INFO     | [data] copytool_out thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:08,633 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 03:55:32] 2025-11-21 11:55:23,504 | INFO     | [monitor] cgroup control has ended
[2025-11-21 03:55:32] 2025-11-21 11:55:24,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139780481099584)>', '<ExcThread(monitor, started 139779643537152)>']
[2025-11-21 03:55:32] 2025-11-21 11:55:29,514 | INFO     | all workflow threads have been joined
[2025-11-21 03:55:32] 2025-11-21 11:55:29,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 03:55:32] 2025-11-21 11:55:29,515 | INFO     | traces error code: 0
[2025-11-21 03:55:32] 2025-11-21 11:55:29,515 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 03:55:32] 2025-11-21 11:55:31,436 | INFO     | PID=3482090 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 03:55:32] 2025-11-21 11:55:31,437 | INFO     | .. there are 33 such processes running
[2025-11-21 03:55:32] 2025-11-21 11:55:31,437 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 03:55:32] 2025-11-21 11:55:31,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 03:55:32] 2025-11-21 11:55:31,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 03:55:32] 2025-11-21 11:55:31,438 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 03:55:32] 2025-11-21 11:55:31,438 | INFO     | [monitor] control thread has ended
[2025-11-21 03:55:32] 2025-11-21 11:55:32,002 [wrapper] ==== pilot stdout END ====
[2025-11-21 03:55:32] 2025-11-21 11:55:32,005 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 03:55:32] 2025-11-21 11:55:32,008 [wrapper] pilotpid: 3482090
[2025-11-21 03:55:32] 2025-11-21 11:55:32,011 [wrapper] Pilot exit status: 0
[2025-11-21 03:55:32] 2025-11-21 11:55:32,025 [wrapper] pandaids: 6894261653
[2025-11-21 03:55:32] 2025-11-21 11:55:32,102 [wrapper] cleanup supervisor_pilot 3482097 3482091
[2025-11-21 03:55:32] 2025-11-21 11:55:32,106 [wrapper] Test setup, not cleaning
[2025-11-21 03:55:32] 2025-11-21 11:55:32,109 [wrapper] apfmon messages muted
[2025-11-21 03:55:32] 2025-11-21 11:55:32,112 [wrapper] ==== wrapper stdout END ====
[2025-11-21 03:55:32] 2025-11-21 11:55:32,114 [wrapper] ==== wrapper stderr END ====
[2025-11-21 03:55:32]  *** Error codes and diagnostics ***
[2025-11-21 03:55:32]     "exeErrorCode": 65,
[2025-11-21 03:55:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 03:55:32]     "pilotErrorCode": 1305,
[2025-11-21 03:55:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 03:55:32]  *** Listing of results directory ***
[2025-11-21 03:55:32] total 405052
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc    576529 Nov 20 20:12 pilot3.tar.gz
[2025-11-21 03:55:32] -rwx------. 1 boinc boinc     36292 Nov 20 20:34 runpilot2-wrapper.sh
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc      5112 Nov 20 20:34 queuedata.json
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc       100 Nov 21 03:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 03:55:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 03:47 run_atlas
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc       105 Nov 21 03:47 job.xml
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc      6594 Nov 21 03:47 init_data.xml
[2025-11-21 03:55:32] -rw-r--r--. 2 boinc boinc 410533582 Nov 21 03:47 EVNT.47493127._002191.pool.root.1
[2025-11-21 03:55:32] -rw-r--r--. 2 boinc boinc     15847 Nov 21 03:47 start_atlas.sh
[2025-11-21 03:55:32] drwxrwx--x. 2 boinc boinc      4096 Nov 21 03:47 shared
[2025-11-21 03:55:32] -rw-r--r--. 2 boinc boinc    590101 Nov 21 03:47 input.tar.gz
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc         0 Nov 21 03:47 boinc_lockfile
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc      2786 Nov 21 03:47 pandaJob.out
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc    989817 Nov 21 03:48 agis_schedconf.cvmfs.json
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc   1526164 Nov 21 03:48 agis_ddmendpoints.agis.ALL.json
[2025-11-21 03:55:32] drwx------. 5 boinc boinc      4096 Nov 21 03:48 pilot3
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc       524 Nov 21 03:51 boinc_task_state.xml
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc       998 Nov 21 03:52 memory_monitor_summary.json
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc     49723 Nov 21 03:52 log.47533967._001629.job.log.tgz.1
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc     10346 Nov 21 03:54 heartbeat.json
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc      8192 Nov 21 03:55 boinc_mmap_file
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc        95 Nov 21 03:55 pilot_heartbeat.json
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc       823 Nov 21 03:55 pilotlog.txt
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc        23 Nov 21 03:55 wrapper_checkpoint.txt
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc    114592 Nov 21 03:55 log.47533967._001629.job.log.1
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc       186 Nov 21 03:55 output.list
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc       620 Nov 21 03:55 runtime_log
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc    184320 Nov 21 03:55 result.tar.gz
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc       644 Nov 21 03:55 ZqDODmR2Xg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZ1IKDm8EXcom.diag
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc      8636 Nov 21 03:55 runtime_log.err
[2025-11-21 03:55:32] -rw-r--r--. 1 boinc boinc     22518 Nov 21 03:55 stderr.txt
[2025-11-21 03:55:32] No HITS result produced
[2025-11-21 03:55:32]  *** Contents of shared directory: ***
[2025-11-21 03:55:32] total 401692
[2025-11-21 03:55:32] -rw-r--r--. 2 boinc boinc 410533582 Nov 21 03:47 ATLAS.root_0
[2025-11-21 03:55:32] -rw-r--r--. 2 boinc boinc     15847 Nov 21 03:47 start_atlas.sh
[2025-11-21 03:55:32] -rw-r--r--. 2 boinc boinc    590101 Nov 21 03:47 input.tar.gz
[2025-11-21 03:55:32] -rw-------. 1 boinc boinc    184320 Nov 21 03:55 result.tar.gz
03:55:34 (3478256): run_atlas exited; CPU time 82.045965
03:55:34 (3478256): called boinc_finish(0)

</stderr_txt>
]]>

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