Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:50:30 (2034664): wrapper (7.7.26015): starting
11:50:30 (2034664): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 11:50:30] Arguments: --nthreads 3
[2025-11-21 11:50:30] Threads: 3
[2025-11-21 11:50:30] Checking for CVMFS
[2025-11-21 11:50:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 11:50:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 11:50:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 11:50:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 11:50:30] 2.9.2.0 16720 1317 74016 153121 1 88 34505954 36864001 0 130560 0 18667693 99.999 37567 1560 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 11:50:30] CVMFS is ok
[2025-11-21 11:50:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 11:50:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 11:50:30] Further information can be found at the LHC@home message board.
[2025-11-21 11:50:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 11:50:30] Checking for apptainer binary...
[2025-11-21 11:50:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 11:50:30] Running /usr/bin/apptainer --version
[2025-11-21 11:50:30] apptainer version 1.4.1-1.1
[2025-11-21 11:50:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 11:50:30] thA335
[2025-11-21 11:50:30] apptainer works
[2025-11-21 11:50:30] Set ATHENA_PROC_NUMBER=3
[2025-11-21 11:50:30] Set ATHENA_CORE_NUMBER=3
[2025-11-21 11:50:30] Starting ATLAS job with PandaID=6893886036
[2025-11-21 11:50:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:54:49]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:54:49] 2025-11-21 10:53:58,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 11:54:49] 2025-11-21 10:53:58,623 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 11:54:49] 2025-11-21 10:53:58,623 | INFO     | update_server=False
[2025-11-21 11:54:49] 2025-11-21 10:53:58,624 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:54:49] 2025-11-21 10:53:58,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:54:49] 2025-11-21 10:53:58,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:54:49] 2025-11-21 10:53:58,819 | INFO     | aborting loop
[2025-11-21 11:54:49] 2025-11-21 10:53:58,901 | INFO     | all job control threads have been joined
[2025-11-21 11:54:49] 2025-11-21 10:53:59,104 | INFO     | all data control threads have been joined
[2025-11-21 11:54:49] 2025-11-21 10:53:59,630 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:53:59,630 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:53:59,825 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:53:59,836 | INFO     | all payload control threads have been joined
[2025-11-21 11:54:49] 2025-11-21 10:53:59,907 | INFO     | [job] control thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:53:59,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:54:49] 2025-11-21 10:54:00,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:54:49] 2025-11-21 10:54:00,110 | INFO     | [data] control thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:00,368 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:00,533 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:00,566 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:00,793 | INFO     | [job] validate thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:00,841 | INFO     | [payload] control thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:00,868 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:00,902 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:00,936 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:01,055 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:02,063 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:03,972 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:54:49] 2025-11-21 10:54:29,440 | INFO     | PID=2038400 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 11:54:49] 2025-11-21 10:54:29,440 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:54:49] 2025-11-21 10:54:29,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:54:49] 2025-11-21 10:54:29,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:54:49] 2025-11-21 10:54:42,543 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:54:49] 2025-11-21 10:54:43,956 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140285902325568)>', '<ExcThread(monitor, started 140285409474304)>']
[2025-11-21 11:54:49] 2025-11-21 10:54:44,520 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:54:49] 2025-11-21 10:54:44,520 | INFO     | [monitor] control thread has ended
[2025-11-21 11:54:49] 2025-11-21 10:54:48,967 | INFO     | all workflow threads have been joined
[2025-11-21 11:54:49] 2025-11-21 10:54:48,967 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:54:49] 2025-11-21 10:54:48,968 | INFO     | traces error code: 0
[2025-11-21 11:54:49] 2025-11-21 10:54:48,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:54:49] 2025-11-21 10:54:49,014 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:54:49] 2025-11-21 10:54:49,018 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:54:49] 2025-11-21 10:54:49,021 [wrapper] pilotpid: 2038400
[2025-11-21 11:54:49] 2025-11-21 10:54:49,024 [wrapper] Pilot exit status: 0
[2025-11-21 11:54:49] 2025-11-21 10:54:49,031 [wrapper] pandaids: 6893886036
[2025-11-21 11:54:49] 2025-11-21 10:54:49,047 [wrapper] cleanup supervisor_pilot 2038406 2038401
[2025-11-21 11:54:49] 2025-11-21 10:54:49,050 [wrapper] Test setup, not cleaning
[2025-11-21 11:54:49] 2025-11-21 10:54:49,053 [wrapper] apfmon messages muted
[2025-11-21 11:54:49] 2025-11-21 10:54:49,056 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:54:49] 2025-11-21 10:54:49,058 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:54:49]  *** Error codes and diagnostics ***
[2025-11-21 11:54:49]     "exeErrorCode": 65,
[2025-11-21 11:54:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 11:54:49]     "pilotErrorCode": 1305,
[2025-11-21 11:54:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 11:54:49]  *** Listing of results directory ***
[2025-11-21 11:54:49] total 404156
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc    576529 Nov 20 23:26 pilot3.tar.gz
[2025-11-21 11:54:49] -rwx------ 1 boinc boinc     36292 Nov 20 23:29 runpilot2-wrapper.sh
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc      5112 Nov 20 23:29 queuedata.json
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc       100 Nov 21 11:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:54:49] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 11:50 run_atlas
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc       105 Nov 21 11:50 job.xml
[2025-11-21 11:54:49] -rw-r--r-- 2 boinc boinc 409650846 Nov 21 11:50 EVNT.47493127._000950.pool.root.1
[2025-11-21 11:54:49] -rw-r--r-- 2 boinc boinc    590100 Nov 21 11:50 input.tar.gz
[2025-11-21 11:54:49] -rw-r--r-- 2 boinc boinc     15847 Nov 21 11:50 start_atlas.sh
[2025-11-21 11:54:49] drwxrwx--x 2 boinc boinc      4096 Nov 21 11:50 shared
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc         0 Nov 21 11:50 boinc_setup_complete
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc      6194 Nov 21 11:50 init_data.xml
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc         0 Nov 21 11:50 boinc_lockfile
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc      2786 Nov 21 11:50 pandaJob.out
[2025-11-21 11:54:49] -rw------- 1 boinc boinc    989817 Nov 21 11:50 agis_schedconf.cvmfs.json
[2025-11-21 11:54:49] -rw------- 1 boinc boinc   1526164 Nov 21 11:50 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:54:49] drwx------ 5 boinc boinc      4096 Nov 21 11:50 pilot3
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc       522 Nov 21 11:51 boinc_task_state.xml
[2025-11-21 11:54:49] -rw------- 1 boinc boinc       951 Nov 21 11:51 memory_monitor_summary.json
[2025-11-21 11:54:49] -rw------- 1 boinc boinc     55898 Nov 21 11:51 log.47523449._009492.job.log.tgz.1
[2025-11-21 11:54:49] -rw------- 1 boinc boinc        95 Nov 21 11:53 pilot_heartbeat.json
[2025-11-21 11:54:49] -rw------- 1 boinc boinc      8413 Nov 21 11:53 heartbeat.json
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc      8192 Nov 21 11:54 boinc_mmap_file
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc        22 Nov 21 11:54 wrapper_checkpoint.txt
[2025-11-21 11:54:49] -rw------- 1 boinc boinc      4752 Nov 21 11:54 pilotlog.txt
[2025-11-21 11:54:49] -rw------- 1 boinc boinc     93709 Nov 21 11:54 log.47523449._009492.job.log.1
[2025-11-21 11:54:49] -rw------- 1 boinc boinc       186 Nov 21 11:54 output.list
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc       620 Nov 21 11:54 runtime_log
[2025-11-21 11:54:49] -rw------- 1 boinc boinc    174080 Nov 21 11:54 result.tar.gz
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc      8744 Nov 21 11:54 runtime_log.err
[2025-11-21 11:54:49] -rw------- 1 boinc boinc       649 Nov 21 11:54 b8QLDmQKSg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm97GKDm58yrKn.diag
[2025-11-21 11:54:49] -rw-r--r-- 1 boinc boinc      8018 Nov 21 11:54 stderr.txt
[2025-11-21 11:54:49] No HITS result produced
[2025-11-21 11:54:49]  *** Contents of shared directory: ***
[2025-11-21 11:54:49] total 400824
[2025-11-21 11:54:49] -rw-r--r-- 2 boinc boinc 409650846 Nov 21 11:50 ATLAS.root_0
[2025-11-21 11:54:49] -rw-r--r-- 2 boinc boinc    590100 Nov 21 11:50 input.tar.gz
[2025-11-21 11:54:49] -rw-r--r-- 2 boinc boinc     15847 Nov 21 11:50 start_atlas.sh
[2025-11-21 11:54:49] -rw------- 1 boinc boinc    174080 Nov 21 11:54 result.tar.gz
11:54:51 (2034664): run_atlas exited; CPU time 32.180808
11:54:51 (2034664): called boinc_finish(0)

</stderr_txt>
]]>

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