Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:38:34 (2913117): wrapper (7.7.26015): starting
05:38:34 (2913117): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 05:38:34] Arguments: --nthreads 8
[2025-11-21 05:38:34] Threads: 8
[2025-11-21 05:38:34] Checking for CVMFS
[2025-11-21 05:38:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 05:38:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 05:38:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 05:38:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 05:38:34] 2.13.2.0 6307 25585 218624 153121 0 64 23558492 40960000 5820 16776704 0 32919435 99.735 20753510 39180 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 05:38:34] CVMFS is ok
[2025-11-21 05:38:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:38:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 05:38:34] Further information can be found at the LHC@home message board.
[2025-11-21 05:38:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:38:34] Checking for apptainer binary...
[2025-11-21 05:38:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 05:38:34] Running /usr/bin/apptainer --version
[2025-11-21 05:38:34] apptainer version 1.4.4-1.el9
[2025-11-21 05:38:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:38:34] c-206-39.aglt2.org
[2025-11-21 05:38:34] apptainer works
[2025-11-21 05:38:34] Set ATHENA_PROC_NUMBER=8
[2025-11-21 05:38:34] Set ATHENA_CORE_NUMBER=8
[2025-11-21 05:38:34] Starting ATLAS job with PandaID=6893836460
[2025-11-21 05:38:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 13:18:01]  *** The last 200 lines of the pilot log: ***
[2025-11-21 13:18:01] 2025-11-21 18:17:01,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:18:01] 2025-11-21 18:17:03,214 | INFO     | PID=2917036 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 13:18:01] 2025-11-21 18:17:03,214 | INFO     | .. there are 16 such processes running
[2025-11-21 13:18:01] 2025-11-21 18:17:03,695 | INFO     | monitor loop #1945: job 0:6893836460 is in state 'finished'
[2025-11-21 13:18:01] 2025-11-21 18:17:03,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:18:01] 2025-11-21 18:17:04,215 | INFO     | time since job start (27500s) is within the limit (172800.0s)
[2025-11-21 13:18:01] 2025-11-21 18:17:04,215 | INFO     | 27502s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 13:18:01] 2025-11-21 18:17:06,202 | INFO     | monitor loop #1946: job 0:6893836460 is in state 'finished'
[2025-11-21 13:18:01] 2025-11-21 18:17:06,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:18:01] 2025-11-21 18:17:06,222 | INFO     | time since job start (27502s) is within the limit (172800.0s)
[2025-11-21 13:18:01] 2025-11-21 18:17:08,231 | INFO     | time since job start (27504s) is within the limit (172800.0s)
[2025-11-21 13:18:01] 2025-11-21 18:17:08,711 | INFO     | monitor loop #1947: job 0:6893836460 is in state 'finished'
[2025-11-21 13:18:01] 2025-11-21 18:17:08,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:18:01] 2025-11-21 18:17:10,238 | INFO     | time since job start (27506s) is within the limit (172800.0s)
[2025-11-21 13:18:01] 2025-11-21 18:17:11,217 | INFO     | monitor loop #1948: job 0:6893836460 is in state 'finished'
[2025-11-21 13:18:01] 2025-11-21 18:17:11,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:18:01] 2025-11-21 18:17:12,266 | INFO     | time since job start (27508s) is within the limit (172800.0s)
[2025-11-21 13:18:01] 2025-11-21 18:17:12,492 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 13:18:01] 2025-11-21 18:17:12,516 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3253.3038281249997
[2025-11-21 13:18:01] 2025-11-21 18:17:12,953 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893836460/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 13:18:01] 2025-11-21 18:17:12,954 | INFO     | extracted standard info from prmon json
[2025-11-21 13:18:01] 2025-11-21 18:17:12,954 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 13:18:01] 2025-11-21 18:17:12,954 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 13:18:01] 2025-11-21 18:17:13,163 | INFO     | fitting pss+swap vs Time
[2025-11-21 13:18:01] 2025-11-21 18:17:13,163 | INFO     | sum of square deviations: 28255755996.491024
[2025-11-21 13:18:01] 2025-11-21 18:17:13,243 | INFO     | sum of deviations: -218840118068.73782
[2025-11-21 13:18:01] 2025-11-21 18:17:13,286 | INFO     | mean x: 1763735243.3844445
[2025-11-21 13:18:01] 2025-11-21 18:17:13,286 | INFO     | mean y: 2803179.408888889
[2025-11-21 13:18:01] 2025-11-21 18:17:13,286 | INFO     | intersect: 13662888188.359943
[2025-11-21 13:18:01] 2025-11-21 18:17:13,287 | INFO     | chi2: 16.56287134575032
[2025-11-21 13:18:01] 2025-11-21 18:17:13,287 | INFO     | sum of square deviations: 27324427360.03613
[2025-11-21 13:18:01] 2025-11-21 18:17:13,296 | INFO     | sum of deviations: -63989961266.88069
[2025-11-21 13:18:01] 2025-11-21 18:17:13,296 | INFO     | mean x: 1763735090.894382
[2025-11-21 13:18:01] 2025-11-21 18:17:13,296 | INFO     | mean y: 2828531.0876404494
[2025-11-21 13:18:01] 2025-11-21 18:17:13,296 | INFO     | intersect: 4133247758.699244
[2025-11-21 13:18:01] 2025-11-21 18:17:13,297 | INFO     | chi2: 12.55828819739971
[2025-11-21 13:18:01] 2025-11-21 18:17:13,297 | INFO     | current chi2=12.55828819739971 (change=24.178073141756915 %)
[2025-11-21 13:18:01] 2025-11-21 18:17:13,297 | INFO     | right removable region: 444
[2025-11-21 13:18:01] 2025-11-21 18:17:13,297 | INFO     | sum of square deviations: 27324239115.6045
[2025-11-21 13:18:01] 2025-11-21 18:17:13,306 | INFO     | sum of deviations: -300611426292.726
[2025-11-21 13:18:01] 2025-11-21 18:17:13,306 | INFO     | mean x: 1763735395.8898876
[2025-11-21 13:18:01] 2025-11-21 18:17:13,322 | INFO     | mean y: 2816504.8831460676
[2025-11-21 13:18:01] 2025-11-21 18:17:13,322 | INFO     | intersect: 19406797370.30587
[2025-11-21 13:18:01] 2025-11-21 18:17:13,323 | INFO     | chi2: 15.21503329929233
[2025-11-21 13:18:01] 2025-11-21 18:17:13,323 | INFO     | current chi2=15.21503329929233 (change=8.137707637292111 %)
[2025-11-21 13:18:01] 2025-11-21 18:17:13,323 | INFO     | left removable region: 10
[2025-11-21 13:18:01] 2025-11-21 18:17:13,323 | INFO     | sum of square deviations: 25347736844.23968
[2025-11-21 13:18:01] 2025-11-21 18:17:13,328 | INFO     | sum of deviations: -129718874515.34093
[2025-11-21 13:18:01] 2025-11-21 18:17:13,328 | INFO     | mean x: 1763735365.4009216
[2025-11-21 13:18:01] 2025-11-21 18:17:13,328 | INFO     | mean y: 2850711.8525345623
[2025-11-21 13:18:01] 2025-11-21 18:17:13,328 | INFO     | intersect: 9028893863.105465
[2025-11-21 13:18:01] 2025-11-21 18:17:13,328 | INFO     | chi2: 10.270602017860387
[2025-11-21 13:18:01] 2025-11-21 18:17:13,328 | INFO     | current memory leak: -5.12 B/s (using 434 data points, chi2=10.27)
[2025-11-21 13:18:01] 2025-11-21 18:17:13,404 | INFO     | could have reported an average CPU frequency of 3238 MHz (19 samples)
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | ..............................
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | . Timing measurements:
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | . get job = 0 s
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | . initial setup = 2 s
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | . payload setup = 5 s
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | . stage-in = 0 s
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | . payload execution = 27428 s
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | . stage-out = 14 s
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | . log creation = 7 s
[2025-11-21 13:18:01] 2025-11-21 18:17:13,405 | INFO     | ..............................
[2025-11-21 13:18:01] 2025-11-21 18:17:13,788 | INFO     | 
[2025-11-21 13:18:01] 2025-11-21 18:17:13,788 | INFO     | job summary report
[2025-11-21 13:18:01] 2025-11-21 18:17:13,788 | INFO     | --------------------------------------------------
[2025-11-21 13:18:01] 2025-11-21 18:17:13,788 | INFO     | PanDA job id: 6893836460
[2025-11-21 13:18:01] 2025-11-21 18:17:13,788 | INFO     | task id: 47523449
[2025-11-21 13:18:01] 2025-11-21 18:17:13,788 | INFO     | errors: (none)
[2025-11-21 13:18:01] 2025-11-21 18:17:13,788 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | pilot state: finished 
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | transexitcode: 0
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | exeerrorcode: 0
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | exeerrordiag: 
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | exitcode: 0
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | exitmsg: OK
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | cpuconsumptiontime: 198901 s
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | nevents: 1000
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | neventsw: 0
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | pid: 2929092
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | pgrp: 2929092
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | corecount: 8
[2025-11-21 13:18:01] 2025-11-21 18:17:13,789 | INFO     | event service: False
[2025-11-21 13:18:01] 2025-11-21 18:17:13,790 | INFO     | sizes: {0: 2298636, 1: 2298835, 4: 2299097, 11: 2299125, 27439: 2336778, 27454: 2345772, 27456: 2345956, 27495: 2345980}
[2025-11-21 13:18:01] 2025-11-21 18:17:13,790 | INFO     | --------------------------------------------------
[2025-11-21 13:18:01] 2025-11-21 18:17:13,790 | INFO     | 
[2025-11-21 13:18:01] 2025-11-21 18:17:13,790 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 13:18:01] 2025-11-21 18:17:14,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,098 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,099 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,100 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 13:18:01] 2025-11-21 18:17:14,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,100 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 13:18:01] 2025-11-21 18:17:14,100 | INFO     | job 6893836460 has completed (purged errors)
[2025-11-21 13:18:01] 2025-11-21 18:17:14,100 | INFO     | overall cleanup function is called
[2025-11-21 13:18:01] 2025-11-21 18:17:15,246 | INFO     | --- collectZombieJob: --- 10, [2929092]
[2025-11-21 13:18:01] 2025-11-21 18:17:15,246 | INFO     | zombie collector waiting for pid 2929092
[2025-11-21 13:18:01] 2025-11-21 18:17:15,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 13:18:01] 2025-11-21 18:17:15,246 | INFO     | collected zombie processes
[2025-11-21 13:18:01] 2025-11-21 18:17:15,246 | INFO     | will attempt to kill all subprocesses of pid=2929092
[2025-11-21 13:18:01] 2025-11-21 18:17:15,865 | INFO     | process IDs to be killed: [2929092] (in reverse order)
[2025-11-21 13:18:01] 2025-11-21 18:17:16,144 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 13:18:01] 2025-11-21 18:17:16,146 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 13:18:01] 2025-11-21 18:17:16,172 | INFO     | did not find any defunct processes belonging to 2929092
[2025-11-21 13:18:01] 2025-11-21 18:17:16,201 | INFO     | did not find any defunct processes belonging to 2929092
[2025-11-21 13:18:01] 2025-11-21 18:17:16,212 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 13:18:01] 2025-11-21 18:17:16,214 | INFO     | ready for new job
[2025-11-21 13:18:01] 2025-11-21 18:17:16,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 13:18:01] 2025-11-21 18:17:16,238 | INFO     | ***************************************
[2025-11-21 13:18:01] 2025-11-21 18:17:16,238 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 13:18:01] 2025-11-21 18:17:16,238 | INFO     | ***************************************
[2025-11-21 13:18:01] 2025-11-21 18:17:16,238 | INFO     | 
[2025-11-21 13:18:01] 2025-11-21 18:17:16,257 | INFO     | architecture information:
[2025-11-21 13:18:01] 2025-11-21 18:17:16,280 | INFO     | executing command: cat /etc/os-release
[2025-11-21 13:18:01] 2025-11-21 18:17:16,351 | INFO     | cat /etc/os-release:
[2025-11-21 13:18:01] NAME="CentOS Linux"
[2025-11-21 13:18:01] VERSION="7 (Core)"
[2025-11-21 13:18:01] ID="centos"
[2025-11-21 13:18:01] ID_LIKE="rhel fedora"
[2025-11-21 13:18:01] VERSION_ID="7"
[2025-11-21 13:18:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 13:18:01] ANSI_COLOR="0;31"
[2025-11-21 13:18:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 13:18:01] HOME_URL="https://www.centos.org/"
[2025-11-21 13:18:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 13:18:01] 
[2025-11-21 13:18:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 13:18:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 13:18:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 13:18:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 13:18:01] 
[2025-11-21 13:18:01] 2025-11-21 18:17:16,351 | INFO     | ***************************************
[2025-11-21 13:18:01] 2025-11-21 18:17:16,855 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 13:18:01] 2025-11-21 18:17:17,035 | INFO     | sufficient remaining disk space (75978768384 B)
[2025-11-21 13:18:01] 2025-11-21 18:17:17,036 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 13:18:01] 2025-11-21 18:17:17,036 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 13:18:01] 2025-11-21 18:17:17,036 | INFO     | update_server=False
[2025-11-21 13:18:01] 2025-11-21 18:17:17,036 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 13:18:01] 2025-11-21 18:17:17,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 13:18:01] 2025-11-21 18:17:17,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 13:18:01] 2025-11-21 18:17:17,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:18:01] 2025-11-21 18:17:17,380 | INFO     | aborting loop
[2025-11-21 13:18:01] 2025-11-21 18:17:17,475 | INFO     | all data control threads have been joined
[2025-11-21 13:18:01] 2025-11-21 18:17:17,922 | INFO     | all payload control threads have been joined
[2025-11-21 13:18:01] 2025-11-21 18:17:18,029 | INFO     | all job control threads have been joined
[2025-11-21 13:18:01] 2025-11-21 18:17:18,041 | INFO     | [job] retrieve thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,197 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,201 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,300 | INFO     | [payload] failed_post thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,336 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,352 | INFO     | [job] validate thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,380 | INFO     | [data] copytool_in thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,389 | INFO     | [job] job monitor thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,481 | INFO     | [data] control thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:18,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:18:01] 2025-11-21 18:17:18,928 | INFO     | [payload] control thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:19,036 | INFO     | [job] control thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:19,050 | INFO     | [data] copytool_out thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:19,153 | INFO     | [payload] validate_post thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:19,422 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:19,810 | INFO     | [job] queue monitor thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:21,062 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 13:18:01] 2025-11-21 18:17:29,730 | INFO     | [monitor] cgroup control has ended
[2025-11-21 13:18:01] 2025-11-21 18:17:30,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955520022336)>', '<ExcThread(monitor, started 139955015751424)>']
[2025-11-21 13:18:01] 2025-11-21 18:17:35,834 | INFO     | all workflow threads have been joined
[2025-11-21 13:18:01] 2025-11-21 18:17:35,834 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 13:18:01] 2025-11-21 18:17:35,834 | INFO     | traces error code: 0
[2025-11-21 13:18:01] 2025-11-21 18:17:35,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 13:18:01] 2025-11-21 18:17:54,926 | INFO     | PID=2917036 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 13:18:01] 2025-11-21 18:17:54,926 | INFO     | .. there are 16 such processes running
[2025-11-21 13:18:01] 2025-11-21 18:17:54,938 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 13:18:01] 2025-11-21 18:17:54,938 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 13:18:01] 2025-11-21 18:17:54,938 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 13:18:01] 2025-11-21 18:17:54,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 13:18:01] 2025-11-21 18:17:54,938 | INFO     | [monitor] control thread has ended
[2025-11-21 13:18:01] 2025-11-21 18:17:59,964 [wrapper] ==== pilot stdout END ====
[2025-11-21 13:18:01] 2025-11-21 18:17:59,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 13:18:01] 2025-11-21 18:18:00,002 [wrapper] pilotpid: 2917036
[2025-11-21 13:18:01] 2025-11-21 18:18:00,016 [wrapper] Pilot exit status: 0
[2025-11-21 13:18:01] 2025-11-21 18:18:00,136 [wrapper] pandaids: 6893836460
[2025-11-21 13:18:01] 2025-11-21 18:18:00,581 [wrapper] cleanup supervisor_pilot 3858546 2917037
[2025-11-21 13:18:01] 2025-11-21 18:18:00,618 [wrapper] Test setup, not cleaning
[2025-11-21 13:18:01] 2025-11-21 18:18:00,655 [wrapper] apfmon messages muted
[2025-11-21 13:18:01] 2025-11-21 18:18:00,688 [wrapper] ==== wrapper stdout END ====
[2025-11-21 13:18:01] 2025-11-21 18:18:00,733 [wrapper] ==== wrapper stderr END ====
[2025-11-21 13:18:01]  *** Error codes and diagnostics ***
[2025-11-21 13:18:01]     "exeErrorCode": 0,
[2025-11-21 13:18:01]     "exeErrorDiag": "",
[2025-11-21 13:18:01]     "pilotErrorCode": 0,
[2025-11-21 13:18:01]     "pilotErrorDiag": "",
[2025-11-21 13:18:01]  *** Listing of results directory ***
[2025-11-21 13:18:01] total 1311388
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:17 queuedata.json
[2025-11-21 13:18:01] -rwx------. 1 boincer umatlas     36292 Nov 20 05:18 runpilot2-wrapper.sh
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas       100 Nov 21 05:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 13:18:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 05:38 run_atlas
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas       105 Nov 21 05:38 job.xml
[2025-11-21 13:18:01] -rw-r--r--. 2 boincer umatlas 408588030 Nov 21 05:38 EVNT.47493127._000104.pool.root.1
[2025-11-21 13:18:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 05:38 start_atlas.sh
[2025-11-21 13:18:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 05:38 shared
[2025-11-21 13:18:01] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 05:38 input.tar.gz
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas         0 Nov 21 05:38 boinc_lockfile
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 05:38 pandaJob.out
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas        57 Nov 21 05:38 setup.sh.local
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas    989817 Nov 21 05:38 agis_schedconf.cvmfs.json
[2025-11-21 13:18:01] drwx------. 5 boincer umatlas      4096 Nov 21 05:38 pilot3
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas       533 Nov 21 12:52 boinc_task_state.xml
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas      6903 Nov 21 13:11 init_data.xml
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas 919211889 Nov 21 13:15 HITS.47523449._001039.pool.root.1
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas      1046 Nov 21 13:16 memory_monitor_summary.json
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas   1526164 Nov 21 13:16 agis_ddmendpoints.agis.ALL.json
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas   1750804 Nov 21 13:16 log.47523449._001039.job.log.tgz.1
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas      8592 Nov 21 13:17 heartbeat.json
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas        95 Nov 21 13:17 pilot_heartbeat.json
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas       823 Nov 21 13:17 pilotlog.txt
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 13:17 boinc_mmap_file
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas        29 Nov 21 13:17 wrapper_checkpoint.txt
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas   3818509 Nov 21 13:18 log.47523449._001039.job.log.1
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas       353 Nov 21 13:18 output.list
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas       620 Nov 21 13:18 runtime_log
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas   5591040 Nov 21 13:18 result.tar.gz
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 13:18 runtime_log.err
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas       660 Nov 21 13:18 BMQNDm2uGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCIHKDm9bfpJo.diag
[2025-11-21 13:18:01] -rw-r--r--. 1 boincer umatlas     21865 Nov 21 13:18 stderr.txt
[2025-11-21 13:18:01] HITS file was successfully produced:
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas 919211889 Nov 21 13:15 shared/HITS.pool.root.1
[2025-11-21 13:18:01]  *** Contents of shared directory: ***
[2025-11-21 13:18:01] total 1302744
[2025-11-21 13:18:01] -rw-r--r--. 2 boincer umatlas 408588030 Nov 21 05:38 ATLAS.root_0
[2025-11-21 13:18:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 05:38 start_atlas.sh
[2025-11-21 13:18:01] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 05:38 input.tar.gz
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas 919211889 Nov 21 13:15 HITS.pool.root.1
[2025-11-21 13:18:01] -rw-------. 1 boincer umatlas   5591040 Nov 21 13:18 result.tar.gz
13:18:03 (2913117): run_atlas exited; CPU time 199022.439155
13:18:03 (2913117): called boinc_finish(0)

</stderr_txt>
]]>

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