Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:32:21 (1966915): wrapper (7.7.26015): starting
05:32:21 (1966915): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 05:32:21] Arguments: --nthreads 8
[2025-11-21 05:32:21] Threads: 8
[2025-11-21 05:32:21] Checking for CVMFS
[2025-11-21 05:32:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 05:32:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 05:32:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 05:32:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 05:32:23] 2.13.2.0 5784 25560 171732 153121 0 89 32275044 39288832 5858 16776704 0 13416163 99.679 9709220 33585 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 05:32:23] CVMFS is ok
[2025-11-21 05:32:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:32:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 05:32:23] Further information can be found at the LHC@home message board.
[2025-11-21 05:32:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:32:23] Checking for apptainer binary...
[2025-11-21 05:32:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 05:32:23] Running /usr/bin/apptainer --version
[2025-11-21 05:32:23] apptainer version 1.4.4-1.el9
[2025-11-21 05:32:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:32:24] c-210-12.aglt2.org
[2025-11-21 05:32:24] apptainer works
[2025-11-21 05:32:24] Set ATHENA_PROC_NUMBER=8
[2025-11-21 05:32:24] Set ATHENA_CORE_NUMBER=8
[2025-11-21 05:32:24] Starting ATLAS job with PandaID=6893885351
[2025-11-21 05:32:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:43:54]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:43:54] 2025-11-22 19:42:38,899 | INFO     | monitor loop #7076: job 0:6893885351 is in state 'finished'
[2025-11-22 14:43:54] 2025-11-22 19:42:38,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:43:54] 2025-11-22 19:42:39,425 | INFO     | time since job start (119374s) is within the limit (172800.0s)
[2025-11-22 14:43:54] 2025-11-22 19:42:41,435 | INFO     | monitor loop #7077: job 0:6893885351 is in state 'finished'
[2025-11-22 14:43:54] 2025-11-22 19:42:41,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:43:54] 2025-11-22 19:42:41,747 | INFO     | PID=1970648 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 14:43:54] 2025-11-22 19:42:41,747 | INFO     | .. there are 9 such processes running
[2025-11-22 14:43:54] 2025-11-22 19:42:42,749 | INFO     | time since job start (119377s) is within the limit (172800.0s)
[2025-11-22 14:43:54] 2025-11-22 19:42:43,952 | INFO     | monitor loop #7078: job 0:6893885351 is in state 'finished'
[2025-11-22 14:43:54] 2025-11-22 19:42:43,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:43:54] 2025-11-22 19:42:44,761 | INFO     | time since job start (119379s) is within the limit (172800.0s)
[2025-11-22 14:43:54] 2025-11-22 19:42:46,463 | INFO     | monitor loop #7079: job 0:6893885351 is in state 'finished'
[2025-11-22 14:43:54] 2025-11-22 19:42:46,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:43:54] 2025-11-22 19:42:46,768 | INFO     | time since job start (119381s) is within the limit (172800.0s)
[2025-11-22 14:43:54] 2025-11-22 19:42:48,776 | INFO     | time since job start (119383s) is within the limit (172800.0s)
[2025-11-22 14:43:54] 2025-11-22 19:42:48,974 | INFO     | monitor loop #7080: job 0:6893885351 is in state 'finished'
[2025-11-22 14:43:54] 2025-11-22 19:42:48,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:43:54] 2025-11-22 19:42:49,486 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 14:43:54] 2025-11-22 19:42:49,502 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2084999999997
[2025-11-22 14:43:54] 2025-11-22 19:42:49,513 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893885351/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:43:54] 2025-11-22 19:42:49,518 | INFO     | extracted standard info from prmon json
[2025-11-22 14:43:54] 2025-11-22 19:42:49,518 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:43:54] 2025-11-22 19:42:49,519 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:43:54] 2025-11-22 19:42:49,593 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:43:54] 2025-11-22 19:42:49,601 | INFO     | sum of square deviations: 2320831999754.967
[2025-11-22 14:43:54] 2025-11-22 19:42:49,829 | INFO     | sum of deviations: -5958922988739.989
[2025-11-22 14:43:54] 2025-11-22 19:42:49,829 | INFO     | mean x: 1763780863.49591
[2025-11-22 14:43:54] 2025-11-22 19:42:49,829 | INFO     | mean y: 2923097.939161554
[2025-11-22 14:43:54] 2025-11-22 19:42:49,829 | INFO     | intersect: 4531572451.143148
[2025-11-22 14:43:54] 2025-11-22 19:42:49,836 | INFO     | chi2: 62.90347592647928
[2025-11-22 14:43:54] 2025-11-22 19:42:49,840 | INFO     | sum of square deviations: 2303083855050.973
[2025-11-22 14:43:54] 2025-11-22 19:42:50,065 | INFO     | sum of deviations: -5274357795094.424
[2025-11-22 14:43:54] 2025-11-22 19:42:50,066 | INFO     | mean x: 1763780711.003588
[2025-11-22 14:43:54] 2025-11-22 19:42:50,066 | INFO     | mean y: 2928979.2039979496
[2025-11-22 14:43:54] 2025-11-22 19:42:50,066 | INFO     | intersect: 4042213315.94955
[2025-11-22 14:43:54] 2025-11-22 19:42:50,073 | INFO     | chi2: 59.155573788556296
[2025-11-22 14:43:54] 2025-11-22 19:42:50,073 | INFO     | current chi2=59.155573788556296 (change=5.9581797074353755 %)
[2025-11-22 14:43:54] 2025-11-22 19:42:50,073 | INFO     | right removable region: 1950
[2025-11-22 14:43:54] 2025-11-22 19:42:50,080 | INFO     | sum of square deviations: 2303079802068.9507
[2025-11-22 14:43:54] 2025-11-22 19:42:50,233 | INFO     | sum of deviations: -6494146796837.038
[2025-11-22 14:43:54] 2025-11-22 19:42:50,233 | INFO     | mean x: 1763781016.0056381
[2025-11-22 14:43:54] 2025-11-22 19:42:50,233 | INFO     | mean y: 2927693.27626858
[2025-11-22 14:43:54] 2025-11-22 19:42:50,234 | INFO     | intersect: 4976377951.111525
[2025-11-22 14:43:54] 2025-11-22 19:42:50,236 | INFO     | chi2: 60.82711978026094
[2025-11-22 14:43:54] 2025-11-22 19:42:50,237 | INFO     | current chi2=60.82711978026094 (change=3.3008607483713 %)
[2025-11-22 14:43:54] 2025-11-22 19:42:50,237 | INFO     | left removable region: 10
[2025-11-22 14:43:54] 2025-11-22 19:42:50,240 | INFO     | sum of square deviations: 2264349761382.0493
[2025-11-22 14:43:54] 2025-11-22 19:42:50,329 | INFO     | sum of deviations: -5807808981451.607
[2025-11-22 14:43:54] 2025-11-22 19:42:50,329 | INFO     | mean x: 1763780985.522165
[2025-11-22 14:43:54] 2025-11-22 19:42:50,330 | INFO     | mean y: 2935852.8396907216
[2025-11-22 14:43:54] 2025-11-22 19:42:50,330 | INFO     | intersect: 4526840782.958322
[2025-11-22 14:43:54] 2025-11-22 19:42:50,332 | INFO     | chi2: 56.28546409955149
[2025-11-22 14:43:54] 2025-11-22 19:42:50,333 | INFO     | current memory leak: -2.56 B/s (using 1940 data points, chi2=56.29)
[2025-11-22 14:43:54] 2025-11-22 19:42:50,335 | INFO     | could have reported an average CPU frequency of 2599 MHz (68 samples)
[2025-11-22 14:43:54] 2025-11-22 19:42:50,336 | INFO     | ..............................
[2025-11-22 14:43:54] 2025-11-22 19:42:50,336 | INFO     | . Timing measurements:
[2025-11-22 14:43:54] 2025-11-22 19:42:50,336 | INFO     | . get job = 0 s
[2025-11-22 14:43:54] 2025-11-22 19:42:50,336 | INFO     | . initial setup = 4 s
[2025-11-22 14:43:54] 2025-11-22 19:42:50,336 | INFO     | . payload setup = 9 s
[2025-11-22 14:43:54] 2025-11-22 19:42:50,336 | INFO     | . stage-in = 0 s
[2025-11-22 14:43:54] 2025-11-22 19:42:50,336 | INFO     | . payload execution = 119304 s
[2025-11-22 14:43:54] 2025-11-22 19:42:50,336 | INFO     | . stage-out = 6 s
[2025-11-22 14:43:54] 2025-11-22 19:42:50,337 | INFO     | . log creation = 1 s
[2025-11-22 14:43:54] 2025-11-22 19:42:50,337 | INFO     | ..............................
[2025-11-22 14:43:54] 2025-11-22 19:42:50,598 | INFO     | 
[2025-11-22 14:43:54] 2025-11-22 19:42:50,598 | INFO     | job summary report
[2025-11-22 14:43:54] 2025-11-22 19:42:50,598 | INFO     | --------------------------------------------------
[2025-11-22 14:43:54] 2025-11-22 19:42:50,598 | INFO     | PanDA job id: 6893885351
[2025-11-22 14:43:54] 2025-11-22 19:42:50,598 | INFO     | task id: 47523449
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | errors: (none)
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | pilot state: finished 
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | transexitcode: 0
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | exeerrorcode: 0
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | exeerrordiag: 
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | exitcode: 0
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | exitmsg: OK
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | cpuconsumptiontime: 302249 s
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | nevents: 1000
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | neventsw: 0
[2025-11-22 14:43:54] 2025-11-22 19:42:50,599 | INFO     | pid: 1977110
[2025-11-22 14:43:54] 2025-11-22 19:42:50,600 | INFO     | pgrp: 1977110
[2025-11-22 14:43:54] 2025-11-22 19:42:50,600 | INFO     | corecount: 8
[2025-11-22 14:43:54] 2025-11-22 19:42:50,600 | INFO     | event service: False
[2025-11-22 14:43:54] 2025-11-22 19:42:50,600 | INFO     | sizes: {0: 2297928, 1: 2298784, 2: 2298784, 12: 2298812, 14: 2299102, 23: 2299130, 119317: 2378644, 119325: 2387694, 119356: 2387884}
[2025-11-22 14:43:54] 2025-11-22 19:42:50,600 | INFO     | --------------------------------------------------
[2025-11-22 14:43:54] 2025-11-22 19:42:50,600 | INFO     | 
[2025-11-22 14:43:54] 2025-11-22 19:42:50,600 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-22 14:43:54] 2025-11-22 19:42:50,690 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,692 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:43:54] 2025-11-22 19:42:50,693 | INFO     | job 6893885351 has completed (purged errors)
[2025-11-22 14:43:54] 2025-11-22 19:42:50,693 | INFO     | overall cleanup function is called
[2025-11-22 14:43:54] 2025-11-22 19:42:51,721 | INFO     | --- collectZombieJob: --- 10, [1977110]
[2025-11-22 14:43:54] 2025-11-22 19:42:51,721 | INFO     | zombie collector waiting for pid 1977110
[2025-11-22 14:43:54] 2025-11-22 19:42:51,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:43:54] 2025-11-22 19:42:51,721 | INFO     | collected zombie processes
[2025-11-22 14:43:54] 2025-11-22 19:42:51,722 | INFO     | will attempt to kill all subprocesses of pid=1977110
[2025-11-22 14:43:54] 2025-11-22 19:42:52,368 | INFO     | process IDs to be killed: [1977110] (in reverse order)
[2025-11-22 14:43:54] 2025-11-22 19:42:52,558 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:43:54] 2025-11-22 19:42:52,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:43:54] 2025-11-22 19:42:52,575 | INFO     | did not find any defunct processes belonging to 1977110
[2025-11-22 14:43:54] 2025-11-22 19:42:52,597 | INFO     | did not find any defunct processes belonging to 1977110
[2025-11-22 14:43:54] 2025-11-22 19:42:52,602 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:43:54] 2025-11-22 19:42:52,602 | INFO     | ready for new job
[2025-11-22 14:43:54] 2025-11-22 19:42:52,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:43:54] 2025-11-22 19:42:52,618 | INFO     | ***************************************
[2025-11-22 14:43:54] 2025-11-22 19:42:52,619 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:43:54] 2025-11-22 19:42:52,619 | INFO     | ***************************************
[2025-11-22 14:43:54] 2025-11-22 19:42:52,619 | INFO     | 
[2025-11-22 14:43:54] 2025-11-22 19:42:52,625 | INFO     | architecture information:
[2025-11-22 14:43:54] 2025-11-22 19:42:52,626 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:43:54] 2025-11-22 19:42:52,694 | INFO     | cat /etc/os-release:
[2025-11-22 14:43:54] NAME="CentOS Linux"
[2025-11-22 14:43:54] VERSION="7 (Core)"
[2025-11-22 14:43:54] ID="centos"
[2025-11-22 14:43:54] ID_LIKE="rhel fedora"
[2025-11-22 14:43:54] VERSION_ID="7"
[2025-11-22 14:43:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:43:54] ANSI_COLOR="0;31"
[2025-11-22 14:43:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:43:54] HOME_URL="https://www.centos.org/"
[2025-11-22 14:43:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:43:54] 
[2025-11-22 14:43:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:43:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:43:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:43:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:43:54] 
[2025-11-22 14:43:54] 2025-11-22 19:42:52,695 | INFO     | ***************************************
[2025-11-22 14:43:54] 2025-11-22 19:42:53,198 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-22 14:43:54] 2025-11-22 19:42:53,266 | INFO     | sufficient remaining disk space (48963256320 B)
[2025-11-22 14:43:54] 2025-11-22 19:42:53,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:43:54] 2025-11-22 19:42:53,267 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:43:54] 2025-11-22 19:42:53,267 | INFO     | update_server=False
[2025-11-22 14:43:54] 2025-11-22 19:42:53,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:43:54] 2025-11-22 19:42:53,267 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:43:54] 2025-11-22 19:42:53,268 | INFO     | aborting loop
[2025-11-22 14:43:54] 2025-11-22 19:42:53,268 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:43:54] 2025-11-22 19:42:53,441 | INFO     | all payload control threads have been joined
[2025-11-22 14:43:54] 2025-11-22 19:42:54,124 | INFO     | all job control threads have been joined
[2025-11-22 14:43:54] 2025-11-22 19:42:54,273 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:54,278 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:54,373 | INFO     | all data control threads have been joined
[2025-11-22 14:43:54] 2025-11-22 19:42:54,389 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:54,447 | INFO     | [payload] control thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:54,522 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:54,622 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:54,634 | INFO     | [job] validate thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:54,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:43:54] 2025-11-22 19:42:55,130 | INFO     | [job] control thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:55,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:55,219 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:55,379 | INFO     | [data] control thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:55,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:43:54] 2025-11-22 19:42:55,490 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:55,626 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:56,470 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:56,737 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:42:57,277 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:43:54] 2025-11-22 19:43:22,179 | INFO     | PID=1970648 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 14:43:54] 2025-11-22 19:43:22,179 | INFO     | .. there are 9 such processes running
[2025-11-22 14:43:54] 2025-11-22 19:43:22,179 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:43:54] 2025-11-22 19:43:22,180 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:43:54] 2025-11-22 19:43:22,180 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:43:54] 2025-11-22 19:43:48,008 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:43:54] 2025-11-22 19:43:48,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140575142336320)>', '<ExcThread(monitor, started 140574791288576)>']
[2025-11-22 14:43:54] 2025-11-22 19:43:49,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:43:54] 2025-11-22 19:43:49,379 | INFO     | [monitor] control thread has ended
[2025-11-22 14:43:54] 2025-11-22 19:43:53,483 | INFO     | all workflow threads have been joined
[2025-11-22 14:43:54] 2025-11-22 19:43:53,483 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:43:54] 2025-11-22 19:43:53,483 | INFO     | traces error code: 0
[2025-11-22 14:43:54] 2025-11-22 19:43:53,484 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:43:54] 2025-11-22 19:43:53,717 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:43:54] 2025-11-22 19:43:53,730 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:43:54] 2025-11-22 19:43:53,735 [wrapper] pilotpid: 1970648
[2025-11-22 14:43:54] 2025-11-22 19:43:53,755 [wrapper] Pilot exit status: 0
[2025-11-22 14:43:54] 2025-11-22 19:43:53,872 [wrapper] pandaids: 6893885351
[2025-11-22 14:43:54] 2025-11-22 19:43:53,999 [wrapper] cleanup supervisor_pilot  521598 1970649
[2025-11-22 14:43:54] 2025-11-22 19:43:54,008 [wrapper] Test setup, not cleaning
[2025-11-22 14:43:54] 2025-11-22 19:43:54,027 [wrapper] apfmon messages muted
[2025-11-22 14:43:54] 2025-11-22 19:43:54,041 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:43:54] 2025-11-22 19:43:54,058 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:43:54]  *** Error codes and diagnostics ***
[2025-11-22 14:43:54]     "exeErrorCode": 0,
[2025-11-22 14:43:54]     "exeErrorDiag": "",
[2025-11-22 14:43:54]     "pilotErrorCode": 0,
[2025-11-22 14:43:54]     "pilotErrorDiag": "",
[2025-11-22 14:43:54]  *** Listing of results directory ***
[2025-11-22 14:43:54] total 1334880
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 16:55 pilot3.tar.gz
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 17:08 queuedata.json
[2025-11-22 14:43:54] -rwx------. 1 boincer umatlas     36292 Nov 20 17:09 runpilot2-wrapper.sh
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas       100 Nov 21 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:43:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 05:32 run_atlas
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas       105 Nov 21 05:32 job.xml
[2025-11-22 14:43:54] -rw-r--r--. 2 boincer umatlas 406181078 Nov 21 05:32 EVNT.47493127._000941.pool.root.1
[2025-11-22 14:43:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 05:32 start_atlas.sh
[2025-11-22 14:43:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 05:32 shared
[2025-11-22 14:43:54] -rw-r--r--. 2 boincer umatlas    590104 Nov 21 05:32 input.tar.gz
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas         0 Nov 21 05:32 boinc_lockfile
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 05:32 pandaJob.out
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas        57 Nov 21 05:32 setup.sh.local
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas    989817 Nov 21 05:33 agis_schedconf.cvmfs.json
[2025-11-22 14:43:54] drwx------. 5 boincer umatlas      4096 Nov 21 05:33 pilot3
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas       533 Nov 22 13:04 boinc_task_state.xml
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas      6662 Nov 22 14:37 init_data.xml
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas 921519869 Nov 22 14:40 HITS.47523449._009403.pool.root.1
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas      1055 Nov 22 14:42 memory_monitor_summary.json
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas   1526164 Nov 22 14:42 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas   2799350 Nov 22 14:42 log.47523449._009403.job.log.tgz.1
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas        95 Nov 22 14:42 pilot_heartbeat.json
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas      8632 Nov 22 14:42 heartbeat.json
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas        29 Nov 22 14:43 wrapper_checkpoint.txt
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 14:43 boinc_mmap_file
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas      4823 Nov 22 14:43 pilotlog.txt
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas  14841965 Nov 22 14:43 log.47523449._009403.job.log.1
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas       353 Nov 22 14:43 output.list
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas       620 Nov 22 14:43 runtime_log
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas  17664000 Nov 22 14:43 result.tar.gz
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas      9344 Nov 22 14:43 runtime_log.err
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas       663 Nov 22 14:43 kPQMDmW1Rg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBcIKDmuNrXcm.diag
[2025-11-22 14:43:54] -rw-r--r--. 1 boincer umatlas     21856 Nov 22 14:43 stderr.txt
[2025-11-22 14:43:54] HITS file was successfully produced:
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas 921519869 Nov 22 14:40 shared/HITS.pool.root.1
[2025-11-22 14:43:54]  *** Contents of shared directory: ***
[2025-11-22 14:43:54] total 1314444
[2025-11-22 14:43:54] -rw-r--r--. 2 boincer umatlas 406181078 Nov 21 05:32 ATLAS.root_0
[2025-11-22 14:43:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 05:32 start_atlas.sh
[2025-11-22 14:43:54] -rw-r--r--. 2 boincer umatlas    590104 Nov 21 05:32 input.tar.gz
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas 921519869 Nov 22 14:40 HITS.pool.root.1
[2025-11-22 14:43:54] -rw-------. 1 boincer umatlas  17664000 Nov 22 14:43 result.tar.gz
14:43:56 (1966915): run_atlas exited; CPU time 304084.842661
14:43:56 (1966915): called boinc_finish(0)

</stderr_txt>
]]>

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