Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:53:37 (2938156): wrapper (7.7.26015): starting
01:53:37 (2938156): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 01:53:37] Arguments: --nthreads 12
[2025-11-21 01:53:37] Threads: 12
[2025-11-21 01:53:37] Checking for CVMFS
[2025-11-21 01:53:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 01:53:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 01:53:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 01:53:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 01:53:38] 2.11.5.0 206137 20932 235008 153117 3 518 34068918 45568001 25098 130560 0 223628837 99.767 149203096 26229 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-21 01:53:38] CVMFS is ok
[2025-11-21 01:53:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:53:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:53:38] Further information can be found at the LHC@home message board.
[2025-11-21 01:53:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:53:38] Checking for apptainer binary...
[2025-11-21 01:53:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 01:53:38] Running /usr/bin/apptainer --version
[2025-11-21 01:53:38] apptainer version 1.4.1-1.el9
[2025-11-21 01:53:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:53:38] wns0025.triumf.lcg
[2025-11-21 01:53:38] apptainer works
[2025-11-21 01:53:38] Set ATHENA_PROC_NUMBER=12
[2025-11-21 01:53:38] Set ATHENA_CORE_NUMBER=12
[2025-11-21 01:53:38] Starting ATLAS job with PandaID=6894257933
[2025-11-21 01:53:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 01:57:54]  *** The last 200 lines of the pilot log: ***
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 01:57:54] 2025-11-21 09:57:11,555 | WARNING  | wrong length of table data, x=[1763718855.0], y=[1202.0] (must be same and length>=4)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | could have reported an average CPU frequency of 2808 MHz (4 samples)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | ..............................
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . Timing measurements:
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . get job = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . initial setup = 2 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . payload setup = 5 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . stage-in = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . payload execution = 57 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . stage-out = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . log creation = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | ..............................
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894257933/pilotlog.txt
[2025-11-21 01:57:54] 2025-11-21 09:57:11,568 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 01:57:54] - Log from pilotlog.txt -
[2025-11-21 01:57:54] 2025-11-21 09:57:11,553 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894257933/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | INFO     | extracted standard info from prmon json
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 01:57:54] 2025-11-21 09:57:11,555 | WARNING  | wrong length of table data, x=[1763718855.0], y=[1202.0] (must be same and length>=4)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | could have reported an average CPU frequency of 2808 MHz (4 samples)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | ..............................
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . Timing measurements:
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . get job = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . initial setup = 2 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . payload setup = 5 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . stage-in = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . payload execution = 57 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . stage-out = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . log creation = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | ..............................
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894257933/pilotlog.txt
[2025-11-21 01:57:54] 2025-11-21 09:57:11,568 | WARNING  | 
[2025-11-21 01:57:54] [begin log extracts]
[2025-11-21 01:57:54] - Log from pilotlog.txt -
[2025-11-21 01:57:54] 2025-11-21 09:57:11,553 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894257933/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | INFO     | extracted standard info from prmon json
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 01:57:54] 2025-11-21 09:57:11,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 01:57:54] 2025-11-21 09:57:11,555 | WARNING  | wrong length of table data, x=[1763718855.0], y=[1202.0] (must be same and length>=4)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | could have reported an average CPU frequency of 2808 MHz (4 samples)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | ..............................
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . Timing measurements:
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . get job = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . initial setup = 2 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . payload setup = 5 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . stage-in = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . payload execution = 57 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . stage-out = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | . log creation = 0 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | ..............................
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 01:57:54] 2025-11-21 09:57:11,556 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894257933/pilotlog.txt
[2025-11-21 01:57:54] [end log extracts]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,568 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,569 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 01:57:54] 2025-11-21 09:57:11,775 | INFO     | 
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | job summary report
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | --------------------------------------------------
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | PanDA job id: 6894257933
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | task id: 47533967
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 01:55:02,603 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | pilot state: failed 
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | transexitcode: 65
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | exeerrorcode: 65
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | exitcode: 65
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 01:57:54] 2025-11-21 09:57:11,776 | INFO     | cpuconsumptiontime: 42 s
[2025-11-21 01:57:54] 2025-11-21 09:57:11,786 | INFO     | nevents: 0
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | neventsw: 0
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | pid: 2948439
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | pgrp: 2948439
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | corecount: 12
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | event service: False
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | sizes: {0: 2298804, 4: 2299066, 11: 2299094, 66: 2324519, 67: 2328809, 69: 2328837, 189: 2329131}
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | --------------------------------------------------
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | 
[2025-11-21 01:57:54] 2025-11-21 09:57:11,787 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 01:57:54] 2025-11-21 09:57:11,801 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,802 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | job 6894257933 has completed (purged errors)
[2025-11-21 01:57:54] 2025-11-21 09:57:11,803 | INFO     | overall cleanup function is called
[2025-11-21 01:57:54] 2025-11-21 09:57:12,811 | INFO     | --- collectZombieJob: --- 10, [2948439]
[2025-11-21 01:57:54] 2025-11-21 09:57:12,811 | INFO     | zombie collector waiting for pid 2948439
[2025-11-21 01:57:54] 2025-11-21 09:57:12,811 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 01:57:54] 2025-11-21 09:57:12,811 | INFO     | collected zombie processes
[2025-11-21 01:57:54] 2025-11-21 09:57:12,811 | INFO     | will attempt to kill all subprocesses of pid=2948439
[2025-11-21 01:57:54] 2025-11-21 09:57:13,039 | INFO     | process IDs to be killed: [2948439] (in reverse order)
[2025-11-21 01:57:54] 2025-11-21 09:57:13,149 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 01:57:54] 2025-11-21 09:57:13,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 01:57:54] 2025-11-21 09:57:13,160 | INFO     | did not find any defunct processes belonging to 2948439
[2025-11-21 01:57:54] 2025-11-21 09:57:13,171 | INFO     | did not find any defunct processes belonging to 2948439
[2025-11-21 01:57:54] 2025-11-21 09:57:13,172 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 01:57:54] 2025-11-21 09:57:13,172 | INFO     | ready for new job
[2025-11-21 01:57:54] 2025-11-21 09:57:13,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 01:57:54] 2025-11-21 09:57:13,174 | INFO     | ***************************************
[2025-11-21 01:57:54] 2025-11-21 09:57:13,174 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 01:57:54] 2025-11-21 09:57:13,174 | INFO     | ***************************************
[2025-11-21 01:57:54] 2025-11-21 09:57:13,174 | INFO     | 
[2025-11-21 01:57:54] 2025-11-21 09:57:13,176 | INFO     | architecture information:
[2025-11-21 01:57:54] 2025-11-21 09:57:13,183 | INFO     | executing command: cat /etc/os-release
[2025-11-21 01:57:54] 2025-11-21 09:57:13,215 | INFO     | cat /etc/os-release:
[2025-11-21 01:57:54] NAME="CentOS Linux"
[2025-11-21 01:57:54] VERSION="7 (Core)"
[2025-11-21 01:57:54] ID="centos"
[2025-11-21 01:57:54] ID_LIKE="rhel fedora"
[2025-11-21 01:57:54] VERSION_ID="7"
[2025-11-21 01:57:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 01:57:54] ANSI_COLOR="0;31"
[2025-11-21 01:57:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 01:57:54] HOME_URL="https://www.centos.org/"
[2025-11-21 01:57:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 01:57:54] 
[2025-11-21 01:57:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 01:57:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 01:57:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 01:57:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 01:57:54] 
[2025-11-21 01:57:54] 2025-11-21 09:57:13,215 | INFO     | ***************************************
[2025-11-21 01:57:54] 2025-11-21 09:57:13,718 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 01:57:54] 2025-11-21 09:57:13,736 | INFO     | sufficient remaining disk space (1777301716992 B)
[2025-11-21 01:57:54] 2025-11-21 09:57:13,736 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 01:57:54] 2025-11-21 09:57:13,736 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 01:57:54] 2025-11-21 09:57:13,736 | INFO     | update_server=False
[2025-11-21 01:57:54] 2025-11-21 09:57:13,736 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 01:57:54] 2025-11-21 09:57:13,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 01:57:54] 2025-11-21 09:57:14,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 01:57:54] 2025-11-21 09:57:14,200 | INFO     | aborting loop
[2025-11-21 01:57:54] 2025-11-21 09:57:14,344 | INFO     | all job control threads have been joined
[2025-11-21 01:57:54] 2025-11-21 09:57:14,388 | INFO     | all payload control threads have been joined
[2025-11-21 01:57:54] 2025-11-21 09:57:14,662 | INFO     | all data control threads have been joined
[2025-11-21 01:57:54] 2025-11-21 09:57:14,742 | INFO     | [job] retrieve thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:14,960 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 01:57:54] 2025-11-21 09:57:15,205 | INFO     | [job] job monitor thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:15,274 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:15,350 | INFO     | [job] control thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:15,393 | INFO     | [payload] control thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:15,667 | INFO     | [data] control thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:15,702 | INFO     | [payload] failed_post thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:15,742 | INFO     | [data] copytool_out thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:15,826 | INFO     | [job] validate thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:15,889 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:16,027 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:16,084 | INFO     | [data] copytool_in thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:16,130 | INFO     | [payload] validate_post thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:16,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:16,638 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 01:57:54] 2025-11-21 09:57:17,644 | INFO     | [job] queue monitor thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:18,967 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 01:57:54] 2025-11-21 09:57:43,828 | INFO     | PID=2941812 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 01:57:54] 2025-11-21 09:57:43,828 | INFO     | .. there are 42 such processes running
[2025-11-21 01:57:54] 2025-11-21 09:57:43,829 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 01:57:54] 2025-11-21 09:57:43,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 01:57:54] 2025-11-21 09:57:43,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 01:57:54] 2025-11-21 09:57:48,423 | INFO     | [monitor] cgroup control has ended
[2025-11-21 01:57:54] 2025-11-21 09:57:49,169 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852384724800)>', '<ExcThread(monitor, started 139851718457088)>']
[2025-11-21 01:57:54] 2025-11-21 09:57:49,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 01:57:54] 2025-11-21 09:57:49,856 | INFO     | [monitor] control thread has ended
[2025-11-21 01:57:54] 2025-11-21 09:57:54,195 | INFO     | all workflow threads have been joined
[2025-11-21 01:57:54] 2025-11-21 09:57:54,196 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 01:57:54] 2025-11-21 09:57:54,196 | INFO     | traces error code: 0
[2025-11-21 01:57:54] 2025-11-21 09:57:54,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 01:57:54] 2025-11-21 09:57:54,311 [wrapper] ==== pilot stdout END ====
[2025-11-21 01:57:54] 2025-11-21 09:57:54,313 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 01:57:54] 2025-11-21 09:57:54,314 [wrapper] pilotpid: 2941812
[2025-11-21 01:57:54] 2025-11-21 09:57:54,316 [wrapper] Pilot exit status: 0
[2025-11-21 01:57:54] 2025-11-21 09:57:54,323 [wrapper] pandaids: 6894257933
[2025-11-21 01:57:54] 2025-11-21 09:57:54,389 [wrapper] cleanup supervisor_pilot 2941818 2941813
[2025-11-21 01:57:54] 2025-11-21 09:57:54,391 [wrapper] Test setup, not cleaning
[2025-11-21 01:57:54] 2025-11-21 09:57:54,393 [wrapper] apfmon messages muted
[2025-11-21 01:57:54] 2025-11-21 09:57:54,396 [wrapper] ==== wrapper stdout END ====
[2025-11-21 01:57:54] 2025-11-21 09:57:54,398 [wrapper] ==== wrapper stderr END ====
[2025-11-21 01:57:54]  *** Error codes and diagnostics ***
[2025-11-21 01:57:54]     "exeErrorCode": 65,
[2025-11-21 01:57:54]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 01:57:54]     "pilotErrorCode": 1305,
[2025-11-21 01:57:54]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 01:57:54]  *** Listing of results directory ***
[2025-11-21 01:57:54] total 404160
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc    576529 Nov 20 19:09 pilot3.tar.gz
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc      5112 Nov 20 19:37 queuedata.json
[2025-11-21 01:57:54] -rwx------. 1 boinc boinc     36292 Nov 20 19:39 runpilot2-wrapper.sh
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc       100 Nov 21 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 01:57:54] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 01:53 run_atlas
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc       105 Nov 21 01:53 job.xml
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc      6594 Nov 21 01:53 init_data.xml
[2025-11-21 01:57:54] -rw-r--r--. 2 boinc boinc 409658868 Nov 21 01:53 EVNT.47493127._002168.pool.root.1
[2025-11-21 01:57:54] -rw-r--r--. 2 boinc boinc     15847 Nov 21 01:53 start_atlas.sh
[2025-11-21 01:57:54] drwxrwx--x. 2 boinc boinc      4096 Nov 21 01:53 shared
[2025-11-21 01:57:54] -rw-r--r--. 2 boinc boinc    590103 Nov 21 01:53 input.tar.gz
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc         0 Nov 21 01:53 boinc_lockfile
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc      2786 Nov 21 01:53 pandaJob.out
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc    989817 Nov 21 01:53 agis_schedconf.cvmfs.json
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc   1526164 Nov 21 01:53 agis_ddmendpoints.agis.ALL.json
[2025-11-21 01:57:54] drwx------. 5 boinc boinc      4096 Nov 21 01:53 pilot3
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc       523 Nov 21 01:54 boinc_task_state.xml
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc       967 Nov 21 01:55 memory_monitor_summary.json
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc     48341 Nov 21 01:55 log.47533967._001398.job.log.tgz.1
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc        95 Nov 21 01:56 pilot_heartbeat.json
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc     10325 Nov 21 01:57 heartbeat.json
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc      8192 Nov 21 01:57 boinc_mmap_file
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc        23 Nov 21 01:57 wrapper_checkpoint.txt
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc      4823 Nov 21 01:57 pilotlog.txt
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc     93356 Nov 21 01:57 log.47533967._001398.job.log.1
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc       186 Nov 21 01:57 output.list
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc       620 Nov 21 01:57 runtime_log
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc    163840 Nov 21 01:57 result.tar.gz
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc       646 Nov 21 01:57 svRLDmdAXg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjyIKDmxRe0jn.diag
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc      8636 Nov 21 01:57 runtime_log.err
[2025-11-21 01:57:54] -rw-r--r--. 1 boinc boinc     22393 Nov 21 01:57 stderr.txt
[2025-11-21 01:57:54] No HITS result produced
[2025-11-21 01:57:54]  *** Contents of shared directory: ***
[2025-11-21 01:57:54] total 400820
[2025-11-21 01:57:54] -rw-r--r--. 2 boinc boinc 409658868 Nov 21 01:53 ATLAS.root_0
[2025-11-21 01:57:54] -rw-r--r--. 2 boinc boinc     15847 Nov 21 01:53 start_atlas.sh
[2025-11-21 01:57:54] -rw-r--r--. 2 boinc boinc    590103 Nov 21 01:53 input.tar.gz
[2025-11-21 01:57:54] -rw-------. 1 boinc boinc    163840 Nov 21 01:57 result.tar.gz
01:57:55 (2938156): run_atlas exited; CPU time 41.552132
01:57:55 (2938156): called boinc_finish(0)

</stderr_txt>
]]>

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