Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:57:48 (1784762): wrapper (7.7.26015): starting
10:57:48 (1784762): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 10:57:48] Arguments: --nthreads 3
[2025-11-21 10:57:48] Threads: 3
[2025-11-21 10:57:48] Checking for CVMFS
[2025-11-21 10:57:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 10:57:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 10:57:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 10:57:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 10:57:48] 2.9.2.0 16720 1264 71500 153118 2 88 34495138 36864001 0 130560 0 17915935 100.000 33523 1403 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 10:57:48] CVMFS is ok
[2025-11-21 10:57:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 10:57:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 10:57:48] Further information can be found at the LHC@home message board.
[2025-11-21 10:57:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 10:57:48] Checking for apptainer binary...
[2025-11-21 10:57:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 10:57:48] Running /usr/bin/apptainer --version
[2025-11-21 10:57:48] apptainer version 1.4.1-1.1
[2025-11-21 10:57:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 10:57:48] thA335
[2025-11-21 10:57:48] apptainer works
[2025-11-21 10:57:48] Set ATHENA_PROC_NUMBER=3
[2025-11-21 10:57:48] Set ATHENA_CORE_NUMBER=3
[2025-11-21 10:57:48] Starting ATLAS job with PandaID=6893883886
[2025-11-21 10:57:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:02:09]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:02:09] 2025-11-21 10:01:20,071 | INFO     | update_server=False
[2025-11-21 11:02:09] 2025-11-21 10:01:20,071 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:02:09] 2025-11-21 10:01:20,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:02:09] 2025-11-21 10:01:20,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:02:09] 2025-11-21 10:01:20,071 | INFO     | aborting loop
[2025-11-21 11:02:09] 2025-11-21 10:01:20,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:02:09] 2025-11-21 10:01:20,854 | INFO     | all job control threads have been joined
[2025-11-21 11:02:09] 2025-11-21 10:01:20,925 | INFO     | all data control threads have been joined
[2025-11-21 11:02:09] 2025-11-21 10:01:21,077 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:21,078 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:21,079 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:21,130 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:21,205 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:21,405 | INFO     | all payload control threads have been joined
[2025-11-21 11:02:09] 2025-11-21 10:01:21,860 | INFO     | [job] control thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:21,872 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:21,927 | INFO     | [data] control thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:22,232 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:22,256 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:22,343 | INFO     | [job] validate thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:22,411 | INFO     | [payload] control thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:22,427 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:22,491 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:22,685 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:22,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:02:09] 2025-11-21 10:01:26,998 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:02:09] 2025-11-21 10:01:49,966 | INFO     | PID=1788496 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 11:02:09] 2025-11-21 10:01:49,966 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:02:09] 2025-11-21 10:01:49,966 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:02:09] 2025-11-21 10:01:49,966 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:02:09] 2025-11-21 10:02:01,011 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:02:09] 2025-11-21 10:02:02,857 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314080139072)>', '<ExcThread(monitor, started 140313586804480)>']
[2025-11-21 11:02:09] 2025-11-21 10:02:03,035 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:02:09] 2025-11-21 10:02:03,035 | INFO     | [monitor] control thread has ended
[2025-11-21 11:02:09] 2025-11-21 10:02:07,883 | INFO     | all workflow threads have been joined
[2025-11-21 11:02:09] 2025-11-21 10:02:07,884 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:02:09] 2025-11-21 10:02:07,885 | INFO     | traces error code: 0
[2025-11-21 11:02:09] 2025-11-21 10:02:07,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:02:09] 2025-11-21 10:02:07,931 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:02:09] 2025-11-21 10:02:07,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:02:09] 2025-11-21 10:02:07,938 [wrapper] pilotpid: 1788496
[2025-11-21 11:02:09] 2025-11-21 10:02:07,941 [wrapper] Pilot exit status: 0
[2025-11-21 11:02:09] 2025-11-21 10:02:07,948 [wrapper] pandaids: 6893883886
[2025-11-21 11:02:09] 2025-11-21 10:02:07,965 [wrapper] cleanup supervisor_pilot 1788502 1788497
[2025-11-21 11:02:09] 2025-11-21 10:02:07,967 [wrapper] Test setup, not cleaning
[2025-11-21 11:02:09] 2025-11-21 10:02:07,970 [wrapper] apfmon messages muted
[2025-11-21 11:02:09] 2025-11-21 10:02:07,972 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:02:09] 2025-11-21 10:02:07,974 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:02:09]  *** Error codes and diagnostics ***
[2025-11-21 11:02:09]     "exeErrorCode": 65,
[2025-11-21 11:02:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 11:02:09]     "pilotErrorCode": 1305,
[2025-11-21 11:02:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 11:02:09]  *** Listing of results directory ***
[2025-11-21 11:02:09] total 403080
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc    576529 Nov 20 22:12 pilot3.tar.gz
[2025-11-21 11:02:09] -rwx------ 1 boinc boinc     36292 Nov 20 22:45 runpilot2-wrapper.sh
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc      5112 Nov 20 22:45 queuedata.json
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc       100 Nov 21 10:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:02:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 10:57 run_atlas
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc       105 Nov 21 10:57 job.xml
[2025-11-21 11:02:09] -rw-r--r-- 2 boinc boinc 408548620 Nov 21 10:57 EVNT.47493127._000924.pool.root.1
[2025-11-21 11:02:09] -rw-r--r-- 2 boinc boinc    590097 Nov 21 10:57 input.tar.gz
[2025-11-21 11:02:09] -rw-r--r-- 2 boinc boinc     15847 Nov 21 10:57 start_atlas.sh
[2025-11-21 11:02:09] drwxrwx--x 2 boinc boinc      4096 Nov 21 10:57 shared
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc         0 Nov 21 10:57 boinc_setup_complete
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc      6194 Nov 21 10:57 init_data.xml
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc         0 Nov 21 10:57 boinc_lockfile
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc      2785 Nov 21 10:57 pandaJob.out
[2025-11-21 11:02:09] -rw------- 1 boinc boinc    989817 Nov 21 10:58 agis_schedconf.cvmfs.json
[2025-11-21 11:02:09] -rw------- 1 boinc boinc   1526164 Nov 21 10:58 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:02:09] drwx------ 5 boinc boinc      4096 Nov 21 10:58 pilot3
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc       523 Nov 21 10:58 boinc_task_state.xml
[2025-11-21 11:02:09] -rw------- 1 boinc boinc       957 Nov 21 10:59 memory_monitor_summary.json
[2025-11-21 11:02:09] -rw------- 1 boinc boinc     55913 Nov 21 10:59 log.47523449._009234.job.log.tgz.1
[2025-11-21 11:02:09] -rw------- 1 boinc boinc        95 Nov 21 11:01 pilot_heartbeat.json
[2025-11-21 11:02:09] -rw------- 1 boinc boinc      8404 Nov 21 11:01 heartbeat.json
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc      8192 Nov 21 11:01 boinc_mmap_file
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc        23 Nov 21 11:01 wrapper_checkpoint.txt
[2025-11-21 11:02:09] -rw------- 1 boinc boinc      4752 Nov 21 11:02 pilotlog.txt
[2025-11-21 11:02:09] -rw------- 1 boinc boinc     93878 Nov 21 11:02 log.47523449._009234.job.log.1
[2025-11-21 11:02:09] -rw------- 1 boinc boinc       186 Nov 21 11:02 output.list
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc       620 Nov 21 11:02 runtime_log
[2025-11-21 11:02:09] -rw------- 1 boinc boinc    174080 Nov 21 11:02 result.tar.gz
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc      8744 Nov 21 11:02 runtime_log.err
[2025-11-21 11:02:09] -rw------- 1 boinc boinc       649 Nov 21 11:02 E7CNDmUeRg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmO6GKDm5TQQSm.diag
[2025-11-21 11:02:09] -rw-r--r-- 1 boinc boinc      7790 Nov 21 11:02 stderr.txt
[2025-11-21 11:02:09] No HITS result produced
[2025-11-21 11:02:09]  *** Contents of shared directory: ***
[2025-11-21 11:02:09] total 399748
[2025-11-21 11:02:09] -rw-r--r-- 2 boinc boinc 408548620 Nov 21 10:57 ATLAS.root_0
[2025-11-21 11:02:09] -rw-r--r-- 2 boinc boinc    590097 Nov 21 10:57 input.tar.gz
[2025-11-21 11:02:09] -rw-r--r-- 2 boinc boinc     15847 Nov 21 10:57 start_atlas.sh
[2025-11-21 11:02:09] -rw------- 1 boinc boinc    174080 Nov 21 11:02 result.tar.gz
11:02:10 (1784762): run_atlas exited; CPU time 32.389544
11:02:10 (1784762): called boinc_finish(0)

</stderr_txt>
]]>

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