Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:20:27 (27391): wrapper (7.7.26015): starting
00:20:27 (27391): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:20:27] Arguments: --nthreads 8
[2025-11-24 00:20:27] Threads: 8
[2025-11-24 00:20:27] Checking for CVMFS
[2025-11-24 00:20:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:20:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:20:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:20:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:20:29] 2.11.2.0 15981 186672 139164 153226 1 186 16753593 25165825 4576 130560 4 66027037 99.887 33148508 2607 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 00:20:29] CVMFS is ok
[2025-11-24 00:20:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:20:29] Checking for apptainer binary...
[2025-11-24 00:20:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:20:29] Running /usr/bin/apptainer --version
[2025-11-24 00:20:29] apptainer version 1.3.2-1.el7
[2025-11-24 00:20:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:20:53] cg-vwn479.simple-grid.lan
[2025-11-24 00:20:53] apptainer works
[2025-11-24 00:20:53] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:20:53] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:20:53] Starting ATLAS job with PandaID=6893884390
[2025-11-24 00:20:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 19:56:38]  *** The last 200 lines of the pilot log: ***
[2025-11-24 19:56:38] 2025-11-24 18:55:19,637 | INFO     | time since job start (70252s) is within the limit (172800.0s)
[2025-11-24 19:56:38] 2025-11-24 18:55:19,820 | INFO     | monitor loop #4737: job 0:6893884390 is in state 'finished'
[2025-11-24 19:56:38] 2025-11-24 18:55:19,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:56:38] 2025-11-24 18:55:21,648 | INFO     | time since job start (70254s) is within the limit (172800.0s)
[2025-11-24 19:56:38] 2025-11-24 18:55:22,324 | INFO     | monitor loop #4738: job 0:6893884390 is in state 'finished'
[2025-11-24 19:56:38] 2025-11-24 18:55:22,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:56:38] 2025-11-24 18:55:23,636 [wrapper] supervise_pilot (15 min periods counter: 79)
[2025-11-24 19:56:38] 2025-11-24 18:55:23,661 | INFO     | time since job start (70256s) is within the limit (172800.0s)
[2025-11-24 19:56:38] 2025-11-24 18:55:24,828 | INFO     | monitor loop #4739: job 0:6893884390 is in state 'finished'
[2025-11-24 19:56:38] 2025-11-24 18:55:24,829 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:56:38] 2025-11-24 18:55:24,925 | INFO     | PID=31159 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 19:56:38] 2025-11-24 18:55:24,925 | INFO     | .. there are 2 such processes running
[2025-11-24 19:56:38] 2025-11-24 18:55:25,928 | INFO     | time since job start (70258s) is within the limit (172800.0s)
[2025-11-24 19:56:38] 2025-11-24 18:55:27,334 | INFO     | monitor loop #4740: job 0:6893884390 is in state 'finished'
[2025-11-24 19:56:38] 2025-11-24 18:55:27,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:56:38] 2025-11-24 18:55:27,935 | INFO     | time since job start (70260s) is within the limit (172800.0s)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,180 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 19:56:38] 2025-11-24 18:55:29,182 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-24 19:56:38] 2025-11-24 18:55:29,184 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6893884390/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,185 | INFO     | extracted standard info from prmon json
[2025-11-24 19:56:38] 2025-11-24 18:55:29,186 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 19:56:38] 2025-11-24 18:55:29,186 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 19:56:38] 2025-11-24 18:55:29,207 | INFO     | fitting pss+swap vs Time
[2025-11-24 19:56:38] 2025-11-24 18:55:29,209 | INFO     | sum of square deviations: 461822282277.2688
[2025-11-24 19:56:38] 2025-11-24 18:55:29,267 | INFO     | sum of deviations: 2707346473818.1387
[2025-11-24 19:56:38] 2025-11-24 18:55:29,268 | INFO     | mean x: 1763975618.3669002
[2025-11-24 19:56:38] 2025-11-24 18:55:29,268 | INFO     | mean y: 2802963.622591944
[2025-11-24 19:56:38] 2025-11-24 18:55:29,268 | INFO     | intersect: -10338173107.816872
[2025-11-24 19:56:38] 2025-11-24 18:55:29,270 | INFO     | chi2: 30.06097902584882
[2025-11-24 19:56:38] 2025-11-24 18:55:29,271 | INFO     | sum of square deviations: 455783112845.99457
[2025-11-24 19:56:38] 2025-11-24 18:55:29,328 | INFO     | sum of deviations: 3079723745646.2134
[2025-11-24 19:56:38] 2025-11-24 18:55:29,328 | INFO     | mean x: 1763975465.8707125
[2025-11-24 19:56:38] 2025-11-24 18:55:29,328 | INFO     | mean y: 2812364.5048372913
[2025-11-24 19:56:38] 2025-11-24 18:55:29,328 | INFO     | intersect: -11916359223.61627
[2025-11-24 19:56:38] 2025-11-24 18:55:29,330 | INFO     | chi2: 26.79988111546334
[2025-11-24 19:56:38] 2025-11-24 18:55:29,330 | INFO     | current chi2=26.79988111546334 (change=10.84827579162119 %)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,330 | INFO     | right removable region: 1136
[2025-11-24 19:56:38] 2025-11-24 18:55:29,332 | INFO     | sum of square deviations: 455782508945.99457
[2025-11-24 19:56:38] 2025-11-24 18:55:29,370 | INFO     | sum of deviations: 2225738133124.807
[2025-11-24 19:56:38] 2025-11-24 18:55:29,371 | INFO     | mean x: 1763975770.8707125
[2025-11-24 19:56:38] 2025-11-24 18:55:29,371 | INFO     | mean y: 2815123.7810026384
[2025-11-24 19:56:38] 2025-11-24 18:55:29,371 | INFO     | intersect: -8611267387.22729
[2025-11-24 19:56:38] 2025-11-24 18:55:29,373 | INFO     | chi2: 25.036502540260393
[2025-11-24 19:56:38] 2025-11-24 18:55:29,373 | INFO     | current chi2=25.036502540260393 (change=16.714280932992843 %)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,373 | INFO     | left removable region: 10
[2025-11-24 19:56:38] 2025-11-24 18:55:29,375 | INFO     | sum of square deviations: 442681559037.0738
[2025-11-24 19:56:38] 2025-11-24 18:55:29,420 | INFO     | sum of deviations: 2256568782626.74
[2025-11-24 19:56:38] 2025-11-24 18:55:29,420 | INFO     | mean x: 1763975740.3792186
[2025-11-24 19:56:38] 2025-11-24 18:55:29,420 | INFO     | mean y: 2837503.501776199
[2025-11-24 19:56:38] 2025-11-24 18:55:29,420 | INFO     | intersect: -8989026981.906511
[2025-11-24 19:56:38] 2025-11-24 18:55:29,422 | INFO     | chi2: 17.272330517661864
[2025-11-24 19:56:38] 2025-11-24 18:55:29,422 | INFO     | current memory leak: 5.10 B/s (using 1126 data points, chi2=17.27)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,424 | INFO     | could have reported an average CPU frequency of 2249 MHz (39 samples)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,424 | INFO     | ..............................
[2025-11-24 19:56:38] 2025-11-24 18:55:29,424 | INFO     | . Timing measurements:
[2025-11-24 19:56:38] 2025-11-24 18:55:29,424 | INFO     | . get job = 0 s
[2025-11-24 19:56:38] 2025-11-24 18:55:29,424 | INFO     | . initial setup = 8 s
[2025-11-24 19:56:38] 2025-11-24 18:55:29,424 | INFO     | . payload setup = 171 s
[2025-11-24 19:56:38] 2025-11-24 18:55:29,424 | INFO     | . stage-in = 0 s
[2025-11-24 19:56:38] 2025-11-24 18:55:29,425 | INFO     | . payload execution = 69783 s
[2025-11-24 19:56:38] 2025-11-24 18:55:29,425 | INFO     | . stage-out = 6 s
[2025-11-24 19:56:38] 2025-11-24 18:55:29,425 | INFO     | . log creation = 2 s
[2025-11-24 19:56:38] 2025-11-24 18:55:29,425 | INFO     | ..............................
[2025-11-24 19:56:38] 2025-11-24 18:55:29,541 | INFO     | 
[2025-11-24 19:56:38] 2025-11-24 18:55:29,541 | INFO     | job summary report
[2025-11-24 19:56:38] 2025-11-24 18:55:29,541 | INFO     | --------------------------------------------------
[2025-11-24 19:56:38] 2025-11-24 18:55:29,541 | INFO     | PanDA job id: 6893884390
[2025-11-24 19:56:38] 2025-11-24 18:55:29,541 | INFO     | task id: 47523449
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | errors: (none)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | pilot state: finished 
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | transexitcode: 0
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | exeerrorcode: 0
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | exeerrordiag: 
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | exitcode: 0
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | exitmsg: OK
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | cpuconsumptiontime: 304968 s
[2025-11-24 19:56:38] 2025-11-24 18:55:29,542 | INFO     | nevents: 1000
[2025-11-24 19:56:38] 2025-11-24 18:55:29,543 | INFO     | neventsw: 0
[2025-11-24 19:56:38] 2025-11-24 18:55:29,543 | INFO     | pid: 5371
[2025-11-24 19:56:38] 2025-11-24 18:55:29,543 | INFO     | pgrp: 5371
[2025-11-24 19:56:38] 2025-11-24 18:55:29,543 | INFO     | corecount: 8
[2025-11-24 19:56:38] 2025-11-24 18:55:29,543 | INFO     | event service: False
[2025-11-24 19:56:38] 2025-11-24 18:55:29,543 | INFO     | sizes: {0: 2298581, 1: 2298836, 2: 2298836, 12: 2298864, 23: 2298892, 34: 2298920, 45: 2299076, 55: 2299104, 66: 2299132, 77: 2299160, 87: 2299216, 98: 2299524, 99
[2025-11-24 19:56:38] 2025-11-24 18:55:29,543 | INFO     | --------------------------------------------------
[2025-11-24 19:56:38] 2025-11-24 18:55:29,543 | INFO     | 
[2025-11-24 19:56:38] 2025-11-24 18:55:29,544 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-24 19:56:38] 2025-11-24 18:55:29,916 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,916 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,916 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,917 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,917 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,917 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,917 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,917 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,917 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,918 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,918 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,918 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,918 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,918 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,918 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,918 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,918 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,919 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 19:56:38] 2025-11-24 18:55:29,919 | INFO     | job 6893884390 has completed (purged errors)
[2025-11-24 19:56:38] 2025-11-24 18:55:29,919 | INFO     | overall cleanup function is called
[2025-11-24 19:56:38] 2025-11-24 18:55:30,941 | INFO     | --- collectZombieJob: --- 10, [5371]
[2025-11-24 19:56:38] 2025-11-24 18:55:30,942 | INFO     | zombie collector waiting for pid 5371
[2025-11-24 19:56:38] 2025-11-24 18:55:30,942 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 19:56:38] 2025-11-24 18:55:30,942 | INFO     | collected zombie processes
[2025-11-24 19:56:38] 2025-11-24 18:55:30,942 | INFO     | will attempt to kill all subprocesses of pid=5371
[2025-11-24 19:56:38] 2025-11-24 18:55:31,032 | INFO     | process IDs to be killed: [5371] (in reverse order)
[2025-11-24 19:56:38] 2025-11-24 18:55:31,580 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 19:56:38] 2025-11-24 18:55:31,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 19:56:38] 2025-11-24 18:55:31,582 | INFO     | did not find any defunct processes belonging to 5371
[2025-11-24 19:56:38] 2025-11-24 18:55:31,584 | INFO     | did not find any defunct processes belonging to 5371
[2025-11-24 19:56:38] 2025-11-24 18:55:31,646 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 19:56:38] 2025-11-24 18:55:31,646 | INFO     | ready for new job
[2025-11-24 19:56:38] 2025-11-24 18:55:31,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 19:56:38] 2025-11-24 18:55:31,650 | INFO     | ***************************************
[2025-11-24 19:56:38] 2025-11-24 18:55:31,651 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 19:56:38] 2025-11-24 18:55:31,651 | INFO     | ***************************************
[2025-11-24 19:56:38] 2025-11-24 18:55:31,651 | INFO     | 
[2025-11-24 19:56:38] 2025-11-24 18:55:31,651 | INFO     | pilot is running in a VM
[2025-11-24 19:56:38] 2025-11-24 18:55:31,651 | INFO     | architecture information:
[2025-11-24 19:56:38] 2025-11-24 18:55:31,660 | INFO     | executing command: cat /etc/os-release
[2025-11-24 19:56:38] 2025-11-24 18:55:31,766 | INFO     | cat /etc/os-release:
[2025-11-24 19:56:38] NAME="CentOS Linux"
[2025-11-24 19:56:38] VERSION="7 (Core)"
[2025-11-24 19:56:38] ID="centos"
[2025-11-24 19:56:38] ID_LIKE="rhel fedora"
[2025-11-24 19:56:38] VERSION_ID="7"
[2025-11-24 19:56:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 19:56:38] ANSI_COLOR="0;31"
[2025-11-24 19:56:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 19:56:38] HOME_URL="https://www.centos.org/"
[2025-11-24 19:56:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 19:56:38] 
[2025-11-24 19:56:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 19:56:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 19:56:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 19:56:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 19:56:38] 
[2025-11-24 19:56:38] 2025-11-24 18:55:31,766 | INFO     | ***************************************
[2025-11-24 19:56:38] 2025-11-24 18:55:32,270 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-24 19:56:38] 2025-11-24 18:55:32,447 | INFO     | sufficient remaining disk space (494129905664 B)
[2025-11-24 19:56:38] 2025-11-24 18:55:32,447 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 19:56:38] 2025-11-24 18:55:32,448 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 19:56:38] 2025-11-24 18:55:32,448 | INFO     | update_server=False
[2025-11-24 19:56:38] 2025-11-24 18:55:32,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 19:56:38] 2025-11-24 18:55:33,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 19:56:38] 2025-11-24 18:55:33,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:56:38] 2025-11-24 18:55:33,365 | INFO     | aborting loop
[2025-11-24 19:56:38] 2025-11-24 18:55:33,454 | INFO     | [job] retrieve thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:33,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 19:56:38] 2025-11-24 18:55:33,486 | INFO     | all payload control threads have been joined
[2025-11-24 19:56:38] 2025-11-24 18:55:33,550 | INFO     | all data control threads have been joined
[2025-11-24 19:56:38] 2025-11-24 18:55:33,584 | INFO     | [payload] validate_post thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:33,746 | INFO     | all job control threads have been joined
[2025-11-24 19:56:38] 2025-11-24 18:55:33,749 | INFO     | [payload] failed_post thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:33,855 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:33,910 | INFO     | [data] copytool_in thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:34,148 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:34,169 | INFO     | [job] validate thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:34,241 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:34,371 | INFO     | [job] job monitor thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:34,435 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:34,493 | INFO     | [payload] control thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:34,557 | INFO     | [data] control thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:34,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:56:38] 2025-11-24 18:55:34,753 | INFO     | [job] control thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:35,320 | INFO     | [data] copytool_out thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:35,564 | INFO     | [job] queue monitor thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:55:37,474 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 19:56:38] 2025-11-24 18:56:01,092 | INFO     | PID=31159 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 19:56:38] 2025-11-24 18:56:01,092 | INFO     | .. there are 2 such processes running
[2025-11-24 19:56:38] 2025-11-24 18:56:01,093 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 19:56:38] 2025-11-24 18:56:01,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 19:56:38] 2025-11-24 18:56:01,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 19:56:38] 2025-11-24 18:56:28,774 | INFO     | [monitor] cgroup control has ended
[2025-11-24 19:56:38] 2025-11-24 18:56:28,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140175680476992)>', '<ExcThread(monitor, started 140175116072704)>']
[2025-11-24 19:56:38] 2025-11-24 18:56:29,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 19:56:38] 2025-11-24 18:56:29,262 | INFO     | [monitor] control thread has ended
[2025-11-24 19:56:38] 2025-11-24 18:56:33,891 | INFO     | all workflow threads have been joined
[2025-11-24 19:56:38] 2025-11-24 18:56:33,892 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 19:56:38] 2025-11-24 18:56:33,892 | INFO     | traces error code: 0
[2025-11-24 19:56:38] 2025-11-24 18:56:33,892 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 19:56:38] 2025-11-24 18:56:34,156 [wrapper] ==== pilot stdout END ====
[2025-11-24 19:56:38] 2025-11-24 18:56:34,300 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 19:56:38] 2025-11-24 18:56:34,412 [wrapper] pilotpid: 31159
[2025-11-24 19:56:38] 2025-11-24 18:56:34,515 [wrapper] Pilot exit status: 0
[2025-11-24 19:56:38] 2025-11-24 18:56:34,895 [wrapper] pandaids: 6893884390
[2025-11-24 19:56:38] 2025-11-24 18:56:36,154 [wrapper] cleanup supervisor_pilot 29623 31160
[2025-11-24 19:56:38] 2025-11-24 18:56:36,262 [wrapper] Test setup, not cleaning
[2025-11-24 19:56:38] 2025-11-24 18:56:36,385 [wrapper] apfmon messages muted
[2025-11-24 19:56:38] 2025-11-24 18:56:36,477 [wrapper] ==== wrapper stdout END ====
[2025-11-24 19:56:38] 2025-11-24 18:56:36,524 [wrapper] ==== wrapper stderr END ====
[2025-11-24 19:56:38]  *** Error codes and diagnostics ***
[2025-11-24 19:56:38]     "exeErrorCode": 0,
[2025-11-24 19:56:38]     "exeErrorDiag": "",
[2025-11-24 19:56:38]     "pilotErrorCode": 0,
[2025-11-24 19:56:38]     "pilotErrorDiag": "",
[2025-11-24 19:56:38]  *** Listing of results directory ***
[2025-11-24 19:56:38] total 1322492
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc    576529 Nov 20 22:12 pilot3.tar.gz
[2025-11-24 19:56:38] -rwx------. 1 boinc boinc     36292 Nov 20 22:52 runpilot2-wrapper.sh
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc      5112 Nov 20 22:52 queuedata.json
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 19:56:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:20 run_atlas
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:20 job.xml
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc      6392 Nov 24 00:20 init_data.xml
[2025-11-24 19:56:38] -rw-r--r--. 2 boinc boinc 409447343 Nov 24 00:20 EVNT.47493127._000928.pool.root.1
[2025-11-24 19:56:38] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:20 start_atlas.sh
[2025-11-24 19:56:38] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:20 shared
[2025-11-24 19:56:38] -rw-r--r--. 2 boinc boinc    590101 Nov 24 00:20 input.tar.gz
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:20 boinc_lockfile
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc      2786 Nov 24 00:20 pandaJob.out
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc    989786 Nov 24 00:24 agis_schedconf.cvmfs.json
[2025-11-24 19:56:38] drwx------. 5 boinc boinc      4096 Nov 24 00:24 pilot3
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc       533 Nov 24 19:31 boinc_task_state.xml
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc 917596768 Nov 24 19:52 HITS.47523449._009280.pool.root.1
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc      1030 Nov 24 19:53 memory_monitor_summary.json
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc   1516227 Nov 24 19:53 agis_ddmendpoints.agis.ALL.json
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc   2286890 Nov 24 19:53 log.47523449._009280.job.log.tgz.1
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc      8636 Nov 24 19:55 heartbeat.json
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc        95 Nov 24 19:56 pilot_heartbeat.json
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc      8192 Nov 24 19:56 boinc_mmap_file
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc        29 Nov 24 19:56 wrapper_checkpoint.txt
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc      4885 Nov 24 19:56 pilotlog.txt
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc   9355587 Nov 24 19:56 log.47523449._009280.job.log.1
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc       353 Nov 24 19:56 output.list
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc       620 Nov 24 19:56 runtime_log
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc  11663360 Nov 24 19:56 result.tar.gz
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc      8833 Nov 24 19:56 runtime_log.err
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc       661 Nov 24 19:56 bKYNDmokRg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvaIKDmQM7SKo.diag
[2025-11-24 19:56:38] -rw-r--r--. 1 boinc boinc     21480 Nov 24 19:56 stderr.txt
[2025-11-24 19:56:38] HITS file was successfully produced:
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc 917596768 Nov 24 19:52 shared/HITS.pool.root.1
[2025-11-24 19:56:38]  *** Contents of shared directory: ***
[2025-11-24 19:56:38] total 1307932
[2025-11-24 19:56:38] -rw-r--r--. 2 boinc boinc 409447343 Nov 24 00:20 ATLAS.root_0
[2025-11-24 19:56:38] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:20 start_atlas.sh
[2025-11-24 19:56:38] -rw-r--r--. 2 boinc boinc    590101 Nov 24 00:20 input.tar.gz
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc 917596768 Nov 24 19:52 HITS.pool.root.1
[2025-11-24 19:56:38] -rw-------. 1 boinc boinc  11663360 Nov 24 19:56 result.tar.gz
19:56:40 (27391): run_atlas exited; CPU time 305273.329659
19:56:40 (27391): called boinc_finish(0)

</stderr_txt>
]]>

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