Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:02:22 (3861648): wrapper (7.7.26015): starting
08:02:22 (3861648): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 08:02:22] Arguments: --nthreads 8
[2025-11-21 08:02:22] Threads: 8
[2025-11-21 08:02:22] Checking for CVMFS
[2025-11-21 08:02:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 08:02:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 08:02:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 08:02:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 08:02:24] 2.13.2.0 5670 25741 115456 153128 3 142 38479772 40960001 6666 16776704 0 17556490 99.738 9492788 28211 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 08:02:24] CVMFS is ok
[2025-11-21 08:02:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 08:02:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 08:02:24] Further information can be found at the LHC@home message board.
[2025-11-21 08:02:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 08:02:24] Checking for apptainer binary...
[2025-11-21 08:02:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 08:02:24] Running /usr/bin/apptainer --version
[2025-11-21 08:02:24] apptainer version 1.4.4-1.el9
[2025-11-21 08:02:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 08:02:25] c-211-8.aglt2.org
[2025-11-21 08:02:25] apptainer works
[2025-11-21 08:02:25] Set ATHENA_PROC_NUMBER=8
[2025-11-21 08:02:25] Set ATHENA_CORE_NUMBER=8
[2025-11-21 08:02:25] Starting ATLAS job with PandaID=6893883887
[2025-11-21 08:02:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:57:55]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:57:55] 2025-11-23 01:56:44,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:57:55] 2025-11-23 01:56:45,272 | INFO     | time since job start (132831s) is within the limit (172800.0s)
[2025-11-22 20:57:55] 2025-11-23 01:56:46,956 | INFO     | monitor loop #8800: job 0:6893883887 is in state 'finished'
[2025-11-22 20:57:55] 2025-11-23 01:56:46,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:57:55] 2025-11-23 01:56:47,278 | INFO     | time since job start (132833s) is within the limit (172800.0s)
[2025-11-22 20:57:55] 2025-11-23 01:56:49,285 | INFO     | time since job start (132835s) is within the limit (172800.0s)
[2025-11-22 20:57:55] 2025-11-23 01:56:49,494 | INFO     | monitor loop #8801: job 0:6893883887 is in state 'finished'
[2025-11-22 20:57:55] 2025-11-23 01:56:49,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:57:55] 2025-11-23 01:56:51,407 | INFO     | PID=3867830 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:57:55] 2025-11-23 01:56:51,408 | INFO     | .. there are 10 such processes running
[2025-11-22 20:57:55] 2025-11-23 01:56:52,001 | INFO     | monitor loop #8802: job 0:6893883887 is in state 'finished'
[2025-11-22 20:57:55] 2025-11-23 01:56:52,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:57:55] 2025-11-23 01:56:52,409 | INFO     | time since job start (132838s) is within the limit (172800.0s)
[2025-11-22 20:57:55] 2025-11-23 01:56:54,416 | INFO     | time since job start (132840s) is within the limit (172800.0s)
[2025-11-22 20:57:55] 2025-11-23 01:56:54,542 | INFO     | monitor loop #8803: job 0:6893883887 is in state 'finished'
[2025-11-22 20:57:55] 2025-11-23 01:56:54,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:57:55] 2025-11-23 01:56:55,809 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 20:57:55] 2025-11-23 01:56:55,822 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2730.0995416666665
[2025-11-22 20:57:55] 2025-11-23 01:56:55,843 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893883887/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:57:55] 2025-11-23 01:56:55,844 | INFO     | extracted standard info from prmon json
[2025-11-22 20:57:55] 2025-11-23 01:56:55,844 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:57:55] 2025-11-23 01:56:55,844 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:57:55] 2025-11-23 01:56:55,924 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:57:55] 2025-11-23 01:56:55,931 | INFO     | sum of square deviations: 3194916575844.623
[2025-11-22 20:57:55] 2025-11-23 01:56:56,297 | INFO     | sum of deviations: 5941114970563.745
[2025-11-22 20:57:55] 2025-11-23 01:56:56,297 | INFO     | mean x: 1763796583.3138788
[2025-11-22 20:57:55] 2025-11-23 01:56:56,297 | INFO     | mean y: 3006417.1438419116
[2025-11-22 20:57:55] 2025-11-23 01:56:56,298 | INFO     | intersect: -3276865854.132917
[2025-11-22 20:57:55] 2025-11-23 01:56:56,310 | INFO     | chi2: 12.761124165991085
[2025-11-22 20:57:55] 2025-11-23 01:56:56,318 | INFO     | sum of square deviations: 3172944790933.1284
[2025-11-22 20:57:55] 2025-11-23 01:56:56,441 | INFO     | time since job start (132842s) is within the limit (172800.0s)
[2025-11-22 20:57:55] 2025-11-23 01:56:56,669 | INFO     | sum of deviations: 6688498633399.046
[2025-11-22 20:57:55] 2025-11-23 01:56:56,670 | INFO     | mean x: 1763796430.818056
[2025-11-22 20:57:55] 2025-11-23 01:56:56,670 | INFO     | mean y: 3011603.8203592813
[2025-11-22 20:57:55] 2025-11-23 01:56:56,670 | INFO     | intersect: -3715032924.036449
[2025-11-22 20:57:55] 2025-11-23 01:56:56,673 | INFO     | chi2: 9.751417755061269
[2025-11-22 20:57:55] 2025-11-23 01:56:56,673 | INFO     | current chi2=9.751417755061269 (change=23.58496298430201 %)
[2025-11-22 20:57:55] 2025-11-23 01:56:56,673 | INFO     | right removable region: 2170
[2025-11-22 20:57:55] 2025-11-23 01:56:56,676 | INFO     | sum of square deviations: 3172942383263.126
[2025-11-22 20:57:55] 2025-11-23 01:56:56,797 | INFO     | sum of deviations: 5161317272671.52
[2025-11-22 20:57:55] 2025-11-23 01:56:56,797 | INFO     | mean x: 1763796735.818056
[2025-11-22 20:57:55] 2025-11-23 01:56:56,797 | INFO     | mean y: 3011827.5734684477
[2025-11-22 20:57:55] 2025-11-23 01:56:56,797 | INFO     | intersect: -2866096230.007179
[2025-11-22 20:57:55] 2025-11-23 01:56:56,800 | INFO     | chi2: 9.648025198273064
[2025-11-22 20:57:55] 2025-11-23 01:56:56,800 | INFO     | current chi2=9.648025198273064 (change=24.395178098921377 %)
[2025-11-22 20:57:55] 2025-11-23 01:56:56,800 | INFO     | left removable region: 10
[2025-11-22 20:57:55] 2025-11-23 01:56:56,803 | INFO     | sum of square deviations: 3124957694414.2
[2025-11-22 20:57:55] 2025-11-23 01:56:56,922 | INFO     | sum of deviations: 5871752305874.428
[2025-11-22 20:57:55] 2025-11-23 01:56:56,923 | INFO     | mean x: 1763796705.325463
[2025-11-22 20:57:55] 2025-11-23 01:56:56,923 | INFO     | mean y: 3019274.2810185184
[2025-11-22 20:57:55] 2025-11-23 01:56:56,923 | INFO     | intersect: -3311130350.8805256
[2025-11-22 20:57:55] 2025-11-23 01:56:56,926 | INFO     | chi2: 5.992623698122017
[2025-11-22 20:57:55] 2025-11-23 01:56:56,926 | INFO     | current memory leak: 1.88 B/s (using 2160 data points, chi2=5.99)
[2025-11-22 20:57:55] 2025-11-23 01:56:56,928 | INFO     | could have reported an average CPU frequency of 2622 MHz (76 samples)
[2025-11-22 20:57:55] 2025-11-23 01:56:56,928 | INFO     | ..............................
[2025-11-22 20:57:55] 2025-11-23 01:56:56,928 | INFO     | . Timing measurements:
[2025-11-22 20:57:55] 2025-11-23 01:56:56,928 | INFO     | . get job = 0 s
[2025-11-22 20:57:55] 2025-11-23 01:56:56,928 | INFO     | . initial setup = 3 s
[2025-11-22 20:57:55] 2025-11-23 01:56:56,928 | INFO     | . payload setup = 18 s
[2025-11-22 20:57:55] 2025-11-23 01:56:56,928 | INFO     | . stage-in = 0 s
[2025-11-22 20:57:55] 2025-11-23 01:56:56,929 | INFO     | . payload execution = 132736 s
[2025-11-22 20:57:55] 2025-11-23 01:56:56,929 | INFO     | . stage-out = 12 s
[2025-11-22 20:57:55] 2025-11-23 01:56:56,929 | INFO     | . log creation = 3 s
[2025-11-22 20:57:55] 2025-11-23 01:56:56,929 | INFO     | ..............................
[2025-11-22 20:57:55] 2025-11-23 01:56:57,238 | INFO     | 
[2025-11-22 20:57:55] 2025-11-23 01:56:57,238 | INFO     | job summary report
[2025-11-22 20:57:55] 2025-11-23 01:56:57,261 | INFO     | --------------------------------------------------
[2025-11-22 20:57:55] 2025-11-23 01:56:57,261 | INFO     | PanDA job id: 6893883887
[2025-11-22 20:57:55] 2025-11-23 01:56:57,261 | INFO     | task id: 47523449
[2025-11-22 20:57:55] 2025-11-23 01:56:57,262 | INFO     | errors: (none)
[2025-11-22 20:57:55] 2025-11-23 01:56:57,262 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:57:55] 2025-11-23 01:56:57,262 | INFO     | pilot state: finished 
[2025-11-22 20:57:55] 2025-11-23 01:56:57,262 | INFO     | transexitcode: 0
[2025-11-22 20:57:55] 2025-11-23 01:56:57,262 | INFO     | exeerrorcode: 0
[2025-11-22 20:57:55] 2025-11-23 01:56:57,262 | INFO     | exeerrordiag: 
[2025-11-22 20:57:55] 2025-11-23 01:56:57,262 | INFO     | exitcode: 0
[2025-11-22 20:57:55] 2025-11-23 01:56:57,262 | INFO     | exitmsg: OK
[2025-11-22 20:57:55] 2025-11-23 01:56:57,263 | INFO     | cpuconsumptiontime: 339832 s
[2025-11-22 20:57:55] 2025-11-23 01:56:57,263 | INFO     | nevents: 1000
[2025-11-22 20:57:55] 2025-11-23 01:56:57,263 | INFO     | neventsw: 0
[2025-11-22 20:57:55] 2025-11-23 01:56:57,263 | INFO     | pid: 3874808
[2025-11-22 20:57:55] 2025-11-23 01:56:57,263 | INFO     | pgrp: 3874808
[2025-11-22 20:57:55] 2025-11-23 01:56:57,263 | INFO     | corecount: 8
[2025-11-22 20:57:55] 2025-11-23 01:56:57,263 | INFO     | event service: False
[2025-11-22 20:57:55] 2025-11-23 01:56:57,263 | INFO     | sizes: {0: 2298585, 1: 2298784, 12: 2298784, 13: 2299074, 23: 2299130, 132759: 2387355, 132773: 2396349, 132775: 2396405, 132804: 2396651}
[2025-11-22 20:57:55] 2025-11-23 01:56:57,264 | INFO     | --------------------------------------------------
[2025-11-22 20:57:55] 2025-11-23 01:56:57,264 | INFO     | 
[2025-11-22 20:57:55] 2025-11-23 01:56:57,264 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-22 20:57:55] 2025-11-23 01:56:57,375 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,376 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,376 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,376 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,376 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,376 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,376 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,376 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,377 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,377 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,377 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,377 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,377 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,377 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,377 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,377 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,378 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,378 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:57:55] 2025-11-23 01:56:57,378 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,378 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:57:55] 2025-11-23 01:56:57,378 | INFO     | job 6893883887 has completed (purged errors)
[2025-11-22 20:57:55] 2025-11-23 01:56:57,378 | INFO     | overall cleanup function is called
[2025-11-22 20:57:55] 2025-11-23 01:56:58,422 | INFO     | --- collectZombieJob: --- 10, [3874808]
[2025-11-22 20:57:55] 2025-11-23 01:56:58,422 | INFO     | zombie collector waiting for pid 3874808
[2025-11-22 20:57:55] 2025-11-23 01:56:58,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:57:55] 2025-11-23 01:56:58,423 | INFO     | collected zombie processes
[2025-11-22 20:57:55] 2025-11-23 01:56:58,423 | INFO     | will attempt to kill all subprocesses of pid=3874808
[2025-11-22 20:57:55] 2025-11-23 01:56:58,961 | INFO     | process IDs to be killed: [3874808] (in reverse order)
[2025-11-22 20:57:55] 2025-11-23 01:56:59,043 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:57:55] 2025-11-23 01:56:59,044 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:57:55] 2025-11-23 01:56:59,092 | INFO     | did not find any defunct processes belonging to 3874808
[2025-11-22 20:57:55] 2025-11-23 01:56:59,136 | INFO     | did not find any defunct processes belonging to 3874808
[2025-11-22 20:57:55] 2025-11-23 01:56:59,137 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:57:55] 2025-11-23 01:56:59,138 | INFO     | ready for new job
[2025-11-22 20:57:55] 2025-11-23 01:56:59,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:57:55] 2025-11-23 01:56:59,144 | INFO     | ***************************************
[2025-11-22 20:57:55] 2025-11-23 01:56:59,144 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:57:55] 2025-11-23 01:56:59,144 | INFO     | ***************************************
[2025-11-22 20:57:55] 2025-11-23 01:56:59,144 | INFO     | 
[2025-11-22 20:57:55] 2025-11-23 01:56:59,147 | INFO     | architecture information:
[2025-11-22 20:57:55] 2025-11-23 01:56:59,148 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:57:55] 2025-11-23 01:56:59,216 | INFO     | cat /etc/os-release:
[2025-11-22 20:57:55] NAME="CentOS Linux"
[2025-11-22 20:57:55] VERSION="7 (Core)"
[2025-11-22 20:57:55] ID="centos"
[2025-11-22 20:57:55] ID_LIKE="rhel fedora"
[2025-11-22 20:57:55] VERSION_ID="7"
[2025-11-22 20:57:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:57:55] ANSI_COLOR="0;31"
[2025-11-22 20:57:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:57:55] HOME_URL="https://www.centos.org/"
[2025-11-22 20:57:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:57:55] 
[2025-11-22 20:57:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:57:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:57:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:57:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:57:55] 
[2025-11-22 20:57:55] 2025-11-23 01:56:59,216 | INFO     | ***************************************
[2025-11-22 20:57:55] 2025-11-23 01:56:59,719 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-22 20:57:55] 2025-11-23 01:56:59,764 | INFO     | sufficient remaining disk space (59324235776 B)
[2025-11-22 20:57:55] 2025-11-23 01:56:59,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:57:55] 2025-11-23 01:56:59,765 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:57:55] 2025-11-23 01:56:59,765 | INFO     | update_server=False
[2025-11-22 20:57:55] 2025-11-23 01:56:59,765 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:57:55] 2025-11-23 01:56:59,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:57:55] 2025-11-23 01:56:59,832 | INFO     | all payload control threads have been joined
[2025-11-22 20:57:55] 2025-11-23 01:57:00,340 | INFO     | all data control threads have been joined
[2025-11-22 20:57:55] 2025-11-23 01:57:00,344 | INFO     | all job control threads have been joined
[2025-11-22 20:57:55] 2025-11-23 01:57:00,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:57:55] 2025-11-23 01:57:00,574 | INFO     | aborting loop
[2025-11-22 20:57:55] 2025-11-23 01:57:00,771 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:00,837 | INFO     | [payload] control thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:00,871 | INFO     | [job] validate thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,024 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,065 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,345 | INFO     | [data] control thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,349 | INFO     | [job] control thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,551 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,561 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,580 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,689 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:01,776 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:02,013 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:02,048 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:57:55] 2025-11-23 01:57:02,085 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:02,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:57:55] 2025-11-23 01:57:03,056 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:06,219 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:57:55] 2025-11-23 01:57:30,552 | INFO     | PID=3867830 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:57:55] 2025-11-23 01:57:30,552 | INFO     | .. there are 9 such processes running
[2025-11-22 20:57:55] 2025-11-23 01:57:30,554 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:57:55] 2025-11-23 01:57:30,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:57:55] 2025-11-23 01:57:30,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:57:55] 2025-11-23 01:57:47,522 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:57:55] 2025-11-23 01:57:49,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140578064000832)>', '<ExcThread(monitor, started 140577433712384)>']
[2025-11-22 20:57:55] 2025-11-23 01:57:49,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:57:55] 2025-11-23 01:57:49,747 | INFO     | [monitor] control thread has ended
[2025-11-22 20:57:55] 2025-11-23 01:57:54,061 | INFO     | all workflow threads have been joined
[2025-11-22 20:57:55] 2025-11-23 01:57:54,061 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:57:55] 2025-11-23 01:57:54,062 | INFO     | traces error code: 0
[2025-11-22 20:57:55] 2025-11-23 01:57:54,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:57:55] 2025-11-23 01:57:54,377 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:57:55] 2025-11-23 01:57:54,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:57:55] 2025-11-23 01:57:54,426 [wrapper] pilotpid: 3867830
[2025-11-22 20:57:55] 2025-11-23 01:57:54,473 [wrapper] Pilot exit status: 0
[2025-11-22 20:57:55] 2025-11-23 01:57:54,594 [wrapper] pandaids: 6893883887
[2025-11-22 20:57:55] 2025-11-23 01:57:55,040 [wrapper] cleanup supervisor_pilot 2983410 3867831
[2025-11-22 20:57:55] 2025-11-23 01:57:55,062 [wrapper] Test setup, not cleaning
[2025-11-22 20:57:55] 2025-11-23 01:57:55,073 [wrapper] apfmon messages muted
[2025-11-22 20:57:55] 2025-11-23 01:57:55,095 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:57:55] 2025-11-23 01:57:55,116 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:57:55]  *** Error codes and diagnostics ***
[2025-11-22 20:57:55]     "exeErrorCode": 0,
[2025-11-22 20:57:55]     "exeErrorDiag": "",
[2025-11-22 20:57:55]     "pilotErrorCode": 0,
[2025-11-22 20:57:55]     "pilotErrorDiag": "",
[2025-11-22 20:57:55]  *** Listing of results directory ***
[2025-11-22 20:57:56] total 1329800
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 16:12 pilot3.tar.gz
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 16:47 queuedata.json
[2025-11-22 20:57:56] -rwx------. 1 boincer umatlas     36292 Nov 20 16:48 runpilot2-wrapper.sh
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas       100 Nov 21 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:57:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 08:02 run_atlas
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas       105 Nov 21 08:02 job.xml
[2025-11-22 20:57:56] -rw-r--r--. 2 boincer umatlas 408548620 Nov 21 08:02 EVNT.47493127._000924.pool.root.1
[2025-11-22 20:57:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 08:02 start_atlas.sh
[2025-11-22 20:57:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 08:02 shared
[2025-11-22 20:57:56] -rw-r--r--. 2 boincer umatlas    590100 Nov 21 08:02 input.tar.gz
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas         0 Nov 21 08:02 boinc_lockfile
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 08:02 pandaJob.out
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas        57 Nov 21 08:02 setup.sh.local
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas    989817 Nov 21 08:02 agis_schedconf.cvmfs.json
[2025-11-22 20:57:56] drwx------. 5 boincer umatlas      4096 Nov 21 08:02 pilot3
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas       534 Nov 22 20:32 boinc_task_state.xml
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas      6616 Nov 22 20:54 init_data.xml
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas 907661895 Nov 22 20:55 HITS.47523449._009235.pool.root.1
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas      1075 Nov 22 20:56 memory_monitor_summary.json
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas   1526164 Nov 22 20:56 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas   3065444 Nov 22 20:56 log.47523449._009235.job.log.tgz.1
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas      8659 Nov 22 20:56 heartbeat.json
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas        95 Nov 22 20:57 pilot_heartbeat.json
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 20:57 boinc_mmap_file
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas      4823 Nov 22 20:57 pilotlog.txt
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas        30 Nov 22 20:57 wrapper_checkpoint.txt
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas  17720159 Nov 22 20:57 log.47523449._009235.job.log.1
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas       353 Nov 22 20:57 output.list
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas       620 Nov 22 20:57 runtime_log
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas  20807680 Nov 22 20:57 result.tar.gz
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas      9339 Nov 22 20:57 runtime_log.err
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas       666 Nov 22 20:57 hQtLDmThRg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmm6GKDmHTc5Tn.diag
[2025-11-22 20:57:56] -rw-r--r--. 1 boincer umatlas     21868 Nov 22 20:57 stderr.txt
[2025-11-22 20:57:56] HITS file was successfully produced:
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas 907661895 Nov 22 20:55 shared/HITS.pool.root.1
[2025-11-22 20:57:56]  *** Contents of shared directory: ***
[2025-11-22 20:57:56] total 1306292
[2025-11-22 20:57:56] -rw-r--r--. 2 boincer umatlas 408548620 Nov 21 08:02 ATLAS.root_0
[2025-11-22 20:57:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 08:02 start_atlas.sh
[2025-11-22 20:57:56] -rw-r--r--. 2 boincer umatlas    590100 Nov 21 08:02 input.tar.gz
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas 907661895 Nov 22 20:55 HITS.pool.root.1
[2025-11-22 20:57:56] -rw-------. 1 boincer umatlas  20807680 Nov 22 20:57 result.tar.gz
20:58:17 (3861648): run_atlas exited; CPU time 342608.007084
20:58:17 (3861648): called boinc_finish(0)

</stderr_txt>
]]>

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