Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:50:58 (1488842): wrapper (7.7.26015): starting
01:50:58 (1488842): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 01:50:58] Arguments: --nthreads 12
[2025-11-21 01:50:58] Threads: 12
[2025-11-21 01:50:58] Checking for CVMFS
[2025-11-21 01:50:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 01:50:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 01:50:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 01:51:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 01:51:00] 2.11.5.0 3664319 20741 343548 153117 1 657 43798261 45568000 18615 130560 0 194247540 99.787 121899044 23259 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-21 01:51:00] CVMFS is ok
[2025-11-21 01:51:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:51:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:51:00] Further information can be found at the LHC@home message board.
[2025-11-21 01:51:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:51:00] Checking for apptainer binary...
[2025-11-21 01:51:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 01:51:00] Running /usr/bin/apptainer --version
[2025-11-21 01:51:02] apptainer version 1.4.1-1.el9
[2025-11-21 01:51:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:51:03] wns0080.triumf.lcg
[2025-11-21 01:51:03] apptainer works
[2025-11-21 01:51:03] Set ATHENA_PROC_NUMBER=12
[2025-11-21 01:51:03] Set ATHENA_CORE_NUMBER=12
[2025-11-21 01:51:03] Starting ATLAS job with PandaID=6894257868
[2025-11-21 01:51:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 01:58:49]  *** The last 200 lines of the pilot log: ***
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | WARNING  | wrong length of table data, x=[1763718763.0, 1763718824.0, 1763718885.0], y=[1071.0, 468667.0, 371561.0] (must be same and length>=4)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | could have reported an average CPU frequency of 2630 MHz (4 samples)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | ..............................
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . Timing measurements:
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . get job = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . initial setup = 6 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . payload setup = 15 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . stage-in = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . payload execution = 163 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . stage-out = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . log creation = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | ..............................
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894257868/pilotlog.txt
[2025-11-21 01:58:49] 2025-11-21 09:57:47,483 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 01:58:49] - Log from pilotlog.txt -
[2025-11-21 01:58:49] 2025-11-21 09:57:47,466 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894257868/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,467 | INFO     | extracted standard info from prmon json
[2025-11-21 01:58:49] 2025-11-21 09:57:47,467 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 01:58:49] 2025-11-21 09:57:47,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 01:58:49] 2025-11-21 09:57:47,468 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 01:58:49] 2025-11-21 09:57:47,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | WARNING  | wrong length of table data, x=[1763718763.0, 1763718824.0, 1763718885.0], y=[1071.0, 468667.0, 371561.0] (must be same and length>=4)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | could have reported an average CPU frequency of 2630 MHz (4 samples)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | ..............................
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . Timing measurements:
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . get job = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . initial setup = 6 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . payload setup = 15 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . stage-in = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . payload execution = 163 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . stage-out = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . log creation = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | ..............................
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894257868/pilotlog.txt
[2025-11-21 01:58:49] 2025-11-21 09:57:47,483 | WARNING  | 
[2025-11-21 01:58:49] [begin log extracts]
[2025-11-21 01:58:49] - Log from pilotlog.txt -
[2025-11-21 01:58:49] 2025-11-21 09:57:47,466 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894257868/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,467 | INFO     | extracted standard info from prmon json
[2025-11-21 01:58:49] 2025-11-21 09:57:47,467 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 01:58:49] 2025-11-21 09:57:47,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 01:58:49] 2025-11-21 09:57:47,468 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 01:58:49] 2025-11-21 09:57:47,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | WARNING  | wrong length of table data, x=[1763718763.0, 1763718824.0, 1763718885.0], y=[1071.0, 468667.0, 371561.0] (must be same and length>=4)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | could have reported an average CPU frequency of 2630 MHz (4 samples)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | ..............................
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . Timing measurements:
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . get job = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . initial setup = 6 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,469 | INFO     | . payload setup = 15 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . stage-in = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . payload execution = 163 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . stage-out = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | . log creation = 0 s
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | ..............................
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 01:58:49] 2025-11-21 09:57:47,470 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894257868/pilotlog.txt
[2025-11-21 01:58:49] [end log extracts]
[2025-11-21 01:58:49] 2025-11-21 09:57:47,484 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 01:58:49] 2025-11-21 09:57:47,484 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 01:58:49] 2025-11-21 09:57:48,045 | INFO     | time since job start (367s) is within the limit (172800.0s)
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | 
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | job summary report
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | --------------------------------------------------
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | PanDA job id: 6894257868
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | task id: 47533967
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 01:55:12,362 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | pilot state: failed 
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | transexitcode: 65
[2025-11-21 01:58:49] 2025-11-21 09:57:48,112 | INFO     | exeerrorcode: 65
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | exitcode: 65
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | cpuconsumptiontime: 44 s
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | nevents: 0
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | neventsw: 0
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | pid: 1499282
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | pgrp: 1499282
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | corecount: 12
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | event service: False
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | sizes: {0: 2298633, 1: 2298832, 13: 2298832, 16: 2299150, 23: 2299178, 183: 2324627, 184: 2324731, 186: 2329049, 187: 2329105, 330: 2329271}
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | --------------------------------------------------
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | 
[2025-11-21 01:58:49] 2025-11-21 09:57:48,113 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 01:58:49] 2025-11-21 09:57:48,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,178 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 01:58:49] 2025-11-21 09:57:48,179 | INFO     | job 6894257868 has completed (purged errors)
[2025-11-21 01:58:49] 2025-11-21 09:57:48,179 | INFO     | overall cleanup function is called
[2025-11-21 01:58:49] 2025-11-21 09:57:49,187 | INFO     | --- collectZombieJob: --- 10, [1499282]
[2025-11-21 01:58:49] 2025-11-21 09:57:49,187 | INFO     | zombie collector waiting for pid 1499282
[2025-11-21 01:58:49] 2025-11-21 09:57:49,187 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 01:58:49] 2025-11-21 09:57:49,187 | INFO     | collected zombie processes
[2025-11-21 01:58:49] 2025-11-21 09:57:49,187 | INFO     | will attempt to kill all subprocesses of pid=1499282
[2025-11-21 01:58:49] 2025-11-21 09:57:49,366 | INFO     | process IDs to be killed: [1499282] (in reverse order)
[2025-11-21 01:58:49] 2025-11-21 09:57:49,439 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 01:58:49] 2025-11-21 09:57:49,440 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 01:58:49] 2025-11-21 09:57:49,486 | INFO     | did not find any defunct processes belonging to 1499282
[2025-11-21 01:58:49] 2025-11-21 09:57:49,494 | INFO     | did not find any defunct processes belonging to 1499282
[2025-11-21 01:58:49] 2025-11-21 09:57:49,495 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 01:58:49] 2025-11-21 09:57:49,495 | INFO     | ready for new job
[2025-11-21 01:58:49] 2025-11-21 09:57:49,496 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 01:58:49] 2025-11-21 09:57:49,497 | INFO     | ***************************************
[2025-11-21 01:58:49] 2025-11-21 09:57:49,497 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 01:58:49] 2025-11-21 09:57:49,497 | INFO     | ***************************************
[2025-11-21 01:58:49] 2025-11-21 09:57:49,497 | INFO     | 
[2025-11-21 01:58:49] 2025-11-21 09:57:49,499 | INFO     | architecture information:
[2025-11-21 01:58:49] 2025-11-21 09:57:49,499 | INFO     | executing command: cat /etc/os-release
[2025-11-21 01:58:49] 2025-11-21 09:57:49,514 | INFO     | cat /etc/os-release:
[2025-11-21 01:58:49] NAME="CentOS Linux"
[2025-11-21 01:58:49] VERSION="7 (Core)"
[2025-11-21 01:58:49] ID="centos"
[2025-11-21 01:58:49] ID_LIKE="rhel fedora"
[2025-11-21 01:58:49] VERSION_ID="7"
[2025-11-21 01:58:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 01:58:49] ANSI_COLOR="0;31"
[2025-11-21 01:58:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 01:58:49] HOME_URL="https://www.centos.org/"
[2025-11-21 01:58:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 01:58:49] 
[2025-11-21 01:58:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 01:58:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 01:58:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 01:58:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 01:58:49] 
[2025-11-21 01:58:49] 2025-11-21 09:57:49,514 | INFO     | ***************************************
[2025-11-21 01:58:49] 2025-11-21 09:57:50,018 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 01:58:49] 2025-11-21 09:57:50,059 | INFO     | sufficient remaining disk space (1740519768064 B)
[2025-11-21 01:58:49] 2025-11-21 09:57:50,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 01:58:49] 2025-11-21 09:57:50,060 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 01:58:49] 2025-11-21 09:57:50,060 | INFO     | update_server=False
[2025-11-21 01:58:49] 2025-11-21 09:57:50,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 01:58:49] 2025-11-21 09:57:50,067 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 01:58:49] 2025-11-21 09:57:50,067 | INFO     | aborting loop
[2025-11-21 01:58:49] 2025-11-21 09:57:50,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 01:58:49] 2025-11-21 09:57:50,208 | INFO     | all payload control threads have been joined
[2025-11-21 01:58:49] 2025-11-21 09:57:50,749 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 01:58:49] 2025-11-21 09:57:50,964 | INFO     | all data control threads have been joined
[2025-11-21 01:58:49] 2025-11-21 09:57:51,066 | INFO     | [job] retrieve thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:51,081 | INFO     | [job] job monitor thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:51,181 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:51,214 | INFO     | [payload] control thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:51,367 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:51,399 | INFO     | all job control threads have been joined
[2025-11-21 01:58:49] 2025-11-21 09:57:51,488 | INFO     | [payload] validate_post thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:51,834 | INFO     | [data] copytool_in thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:51,970 | INFO     | [data] control thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:52,084 | INFO     | [data] copytool_out thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:52,152 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:52,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:52,407 | INFO     | [job] control thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:52,489 | INFO     | [job] validate thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:52,615 | INFO     | [payload] failed_post thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:52,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 01:58:49] 2025-11-21 09:57:53,692 | INFO     | [job] queue monitor thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:57:54,758 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 01:58:49] 2025-11-21 09:58:21,887 | INFO     | PID=1492560 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 01:58:49] 2025-11-21 09:58:21,888 | INFO     | .. there are 28 such processes running
[2025-11-21 01:58:49] 2025-11-21 09:58:21,889 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 01:58:49] 2025-11-21 09:58:21,889 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 01:58:49] 2025-11-21 09:58:21,889 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 01:58:49] 2025-11-21 09:58:41,164 | INFO     | [monitor] cgroup control has ended
[2025-11-21 01:58:49] 2025-11-21 09:58:42,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746467374912)>', '<ExcThread(monitor, started 139745904531200)>']
[2025-11-21 01:58:49] 2025-11-21 09:58:43,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 01:58:49] 2025-11-21 09:58:43,022 | INFO     | [monitor] control thread has ended
[2025-11-21 01:58:49] 2025-11-21 09:58:47,478 | INFO     | all workflow threads have been joined
[2025-11-21 01:58:49] 2025-11-21 09:58:47,478 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 01:58:49] 2025-11-21 09:58:47,478 | INFO     | traces error code: 0
[2025-11-21 01:58:49] 2025-11-21 09:58:47,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 01:58:49] 2025-11-21 09:58:48,185 [wrapper] ==== pilot stdout END ====
[2025-11-21 01:58:49] 2025-11-21 09:58:48,251 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 01:58:49] 2025-11-21 09:58:48,263 [wrapper] pilotpid: 1492560
[2025-11-21 01:58:49] 2025-11-21 09:58:48,284 [wrapper] Pilot exit status: 0
[2025-11-21 01:58:49] 2025-11-21 09:58:48,455 [wrapper] pandaids: 6894257868
[2025-11-21 01:58:49] 2025-11-21 09:58:48,535 [wrapper] cleanup supervisor_pilot 1492566 1492561
[2025-11-21 01:58:49] 2025-11-21 09:58:48,537 [wrapper] Test setup, not cleaning
[2025-11-21 01:58:49] 2025-11-21 09:58:48,539 [wrapper] apfmon messages muted
[2025-11-21 01:58:49] 2025-11-21 09:58:48,541 [wrapper] ==== wrapper stdout END ====
[2025-11-21 01:58:49] 2025-11-21 09:58:48,542 [wrapper] ==== wrapper stderr END ====
[2025-11-21 01:58:49]  *** Error codes and diagnostics ***
[2025-11-21 01:58:49]     "exeErrorCode": 65,
[2025-11-21 01:58:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 01:58:49]     "pilotErrorCode": 1305,
[2025-11-21 01:58:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 01:58:49]  *** Listing of results directory ***
[2025-11-21 01:58:49] total 405944
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc    576529 Nov 20 19:09 pilot3.tar.gz
[2025-11-21 01:58:49] -rwx------. 1 boinc boinc     36292 Nov 20 19:25 runpilot2-wrapper.sh
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc      5112 Nov 20 19:25 queuedata.json
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc       100 Nov 21 01:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 01:58:49] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 01:50 run_atlas
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc       105 Nov 21 01:50 job.xml
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc      6594 Nov 21 01:50 init_data.xml
[2025-11-21 01:58:49] -rw-r--r--. 2 boinc boinc 411442774 Nov 21 01:50 EVNT.47493127._002163.pool.root.1
[2025-11-21 01:58:49] drwxrwx--x. 2 boinc boinc      4096 Nov 21 01:50 shared
[2025-11-21 01:58:49] -rw-r--r--. 2 boinc boinc    590102 Nov 21 01:50 input.tar.gz
[2025-11-21 01:58:49] -rw-r--r--. 2 boinc boinc     15847 Nov 21 01:50 start_atlas.sh
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc         0 Nov 21 01:50 boinc_lockfile
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc      2786 Nov 21 01:51 pandaJob.out
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc    989817 Nov 21 01:51 agis_schedconf.cvmfs.json
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc   1526164 Nov 21 01:51 agis_ddmendpoints.agis.ALL.json
[2025-11-21 01:58:49] drwx------. 5 boinc boinc      4096 Nov 21 01:51 pilot3
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc       524 Nov 21 01:54 boinc_task_state.xml
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc       995 Nov 21 01:55 memory_monitor_summary.json
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc     49824 Nov 21 01:55 log.47533967._001350.job.log.tgz.1
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc        95 Nov 21 01:57 pilot_heartbeat.json
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc     10343 Nov 21 01:57 heartbeat.json
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc      8192 Nov 21 01:58 boinc_mmap_file
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc      4823 Nov 21 01:58 pilotlog.txt
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc        23 Nov 21 01:58 wrapper_checkpoint.txt
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc    111257 Nov 21 01:58 log.47533967._001350.job.log.1
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc       186 Nov 21 01:58 output.list
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc       620 Nov 21 01:58 runtime_log
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc    184320 Nov 21 01:58 result.tar.gz
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc      8636 Nov 21 01:58 runtime_log.err
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc       646 Nov 21 01:58 ka9NDmSxWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoxIKDmiY3JDo.diag
[2025-11-21 01:58:49] -rw-r--r--. 1 boinc boinc     22605 Nov 21 01:58 stderr.txt
[2025-11-21 01:58:49] No HITS result produced
[2025-11-21 01:58:49]  *** Contents of shared directory: ***
[2025-11-21 01:58:49] total 402580
[2025-11-21 01:58:49] -rw-r--r--. 2 boinc boinc 411442774 Nov 21 01:50 ATLAS.root_0
[2025-11-21 01:58:49] -rw-r--r--. 2 boinc boinc    590102 Nov 21 01:50 input.tar.gz
[2025-11-21 01:58:49] -rw-r--r--. 2 boinc boinc     15847 Nov 21 01:50 start_atlas.sh
[2025-11-21 01:58:49] -rw-------. 1 boinc boinc    184320 Nov 21 01:58 result.tar.gz
01:58:50 (1488842): run_atlas exited; CPU time 49.448456
01:58:50 (1488842): called boinc_finish(0)

</stderr_txt>
]]>

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