Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:37:27 (1420563): wrapper (7.7.26015): starting
07:37:27 (1420563): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 07:37:27] Arguments: --nthreads 8
[2025-11-21 07:37:27] Threads: 8
[2025-11-21 07:37:27] Checking for CVMFS
[2025-11-21 07:37:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:37:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:37:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:37:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:37:30] 2.13.3.0 5354 207 81988 153127 1 299 33383337 40960000 15983 16776704 0 1647462 99.857 557961 32383 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 07:37:30] CVMFS is ok
[2025-11-21 07:37:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:37:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:37:30] Further information can be found at the LHC@home message board.
[2025-11-21 07:37:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:37:30] Checking for apptainer binary...
[2025-11-21 07:37:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:37:30] Running /usr/bin/apptainer --version
[2025-11-21 07:37:30] apptainer version 1.4.4-1.el9
[2025-11-21 07:37:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:37:31] lc-12-9.aglt2.org
[2025-11-21 07:37:31] apptainer works
[2025-11-21 07:37:31] Set ATHENA_PROC_NUMBER=8
[2025-11-21 07:37:31] Set ATHENA_CORE_NUMBER=8
[2025-11-21 07:37:31] Starting ATLAS job with PandaID=6893883561
[2025-11-21 07:37:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:30:18 (4262): wrapper (7.7.26015): starting
08:30:18 (4262): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 08:30:18] Arguments: --nthreads 8
[2025-11-21 08:30:18] Threads: 8
[2025-11-21 08:30:18] This job has been restarted, cleaning up previous attempt
[2025-11-21 08:30:18] Checking for CVMFS
[2025-11-21 08:30:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 08:30:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 08:30:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 08:30:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 08:30:25] 2.13.3.0 5206 0 31848 153129 3 1 35191054 40960001 0 16776704 0 0 0.000 1291 33102 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 08:30:25] CVMFS is ok
[2025-11-21 08:30:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 08:30:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 08:30:25] Further information can be found at the LHC@home message board.
[2025-11-21 08:30:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 08:30:25] Checking for apptainer binary...
[2025-11-21 08:30:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 08:30:25] Running /usr/bin/apptainer --version
[2025-11-21 08:30:25] apptainer version 1.4.4-1.el9
[2025-11-21 08:30:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 08:30:25] lc-12-9.aglt2.org
[2025-11-21 08:30:25] apptainer works
[2025-11-21 08:30:25] Set ATHENA_PROC_NUMBER=8
[2025-11-21 08:30:25] Set ATHENA_CORE_NUMBER=8
[2025-11-21 08:30:25] Starting ATLAS job with PandaID=6893883561
[2025-11-21 08:30:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 11:29:57]  *** The last 200 lines of the pilot log: ***
[2025-11-22 11:29:57] 2025-11-22 16:29:21,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 11:29:57] 2025-11-22 16:29:22,672 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 11:29:57] 2025-11-22 16:29:22,679 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2530.8577291666666
[2025-11-22 11:29:57] 2025-11-22 16:29:22,697 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6893883561/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 11:29:57] 2025-11-22 16:29:22,698 | INFO     | extracted standard info from prmon json
[2025-11-22 11:29:57] 2025-11-22 16:29:22,698 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 11:29:57] 2025-11-22 16:29:22,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 11:29:57] 2025-11-22 16:29:22,723 | INFO     | fitting pss+swap vs Time
[2025-11-22 11:29:57] 2025-11-22 16:29:22,726 | INFO     | sum of square deviations: 1251191331472.831
[2025-11-22 11:29:57] 2025-11-22 16:29:22,781 | INFO     | sum of deviations: 3734873726839.997
[2025-11-22 11:29:57] 2025-11-22 16:29:22,781 | INFO     | mean x: 1763780397.3693466
[2025-11-22 11:29:57] 2025-11-22 16:29:22,781 | INFO     | mean y: 3000732.4711055276
[2025-11-22 11:29:57] 2025-11-22 16:29:22,782 | INFO     | intersect: -5261979051.472695
[2025-11-22 11:29:57] 2025-11-22 16:29:22,790 | INFO     | chi2: 5.338308615421271
[2025-11-22 11:29:57] 2025-11-22 16:29:22,813 | INFO     | sum of square deviations: 1239441771257.7275
[2025-11-22 11:29:57] 2025-11-22 16:29:22,869 | INFO     | sum of deviations: 4256196364949.7007
[2025-11-22 11:29:57] 2025-11-22 16:29:22,869 | INFO     | mean x: 1763780244.8815374
[2025-11-22 11:29:57] 2025-11-22 16:29:22,869 | INFO     | mean y: 3007496.1739130435
[2025-11-22 11:29:57] 2025-11-22 16:29:22,869 | INFO     | intersect: -6053747440.540174
[2025-11-22 11:29:57] 2025-11-22 16:29:22,871 | INFO     | chi2: 2.495889600470075
[2025-11-22 11:29:57] 2025-11-22 16:29:22,872 | INFO     | current chi2=2.495889600470075 (change=53.24568547311098 %)
[2025-11-22 11:29:57] 2025-11-22 16:29:22,874 | INFO     | sum of square deviations: 1227766026379.6592
[2025-11-22 11:29:57] 2025-11-22 16:29:22,925 | INFO     | sum of deviations: 4391989901809.3784
[2025-11-22 11:29:57] 2025-11-22 16:29:22,925 | INFO     | mean x: 1763780092.3938053
[2025-11-22 11:29:57] 2025-11-22 16:29:22,925 | INFO     | mean y: 3009266.3862199746
[2025-11-22 11:29:57] 2025-11-22 16:29:22,926 | INFO     | intersect: -6306421185.642408
[2025-11-22 11:29:57] 2025-11-22 16:29:22,928 | INFO     | chi2: 2.044602140210845
[2025-11-22 11:29:57] 2025-11-22 16:29:22,928 | INFO     | current chi2=2.044602140210845 (change=18.081226836885524 %)
[2025-11-22 11:29:57] 2025-11-22 16:29:22,928 | INFO     | right removable region: 1581
[2025-11-22 11:29:57] 2025-11-22 16:29:22,930 | INFO     | sum of square deviations: 1239438013657.7292
[2025-11-22 11:29:57] 2025-11-22 16:29:22,946 | INFO     | time since job start (97122s) is within the limit (172800.0s)
[2025-11-22 11:29:57] 2025-11-22 16:29:22,985 | INFO     | sum of deviations: 3382513558471.0913
[2025-11-22 11:29:57] 2025-11-22 16:29:22,985 | INFO     | mean x: 1763780549.8815374
[2025-11-22 11:29:57] 2025-11-22 16:29:22,985 | INFO     | mean y: 3005299.8834278514
[2025-11-22 11:29:57] 2025-11-22 16:29:22,985 | INFO     | intersect: -4810475937.903919
[2025-11-22 11:29:57] 2025-11-22 16:29:22,987 | INFO     | chi2: 3.7493046955499842
[2025-11-22 11:29:57] 2025-11-22 16:29:22,987 | INFO     | current chi2=3.7493046955499842 (change=29.766055774313653 %)
[2025-11-22 11:29:57] 2025-11-22 16:29:22,989 | INFO     | sum of square deviations: 1227758898434.7993
[2025-11-22 11:29:57] 2025-11-22 16:29:23,039 | INFO     | sum of deviations: 3258114750145.044
[2025-11-22 11:29:57] 2025-11-22 16:29:23,040 | INFO     | mean x: 1763780702.3912768
[2025-11-22 11:29:57] 2025-11-22 16:29:23,040 | INFO     | mean y: 3006924.017699115
[2025-11-22 11:29:57] 2025-11-22 16:29:23,040 | INFO     | intersect: -4677553672.861885
[2025-11-22 11:29:57] 2025-11-22 16:29:23,042 | INFO     | chi2: 3.66344900714107
[2025-11-22 11:29:57] 2025-11-22 16:29:23,042 | INFO     | current chi2=3.66344900714107 (change=2.2899096067283 %)
[2025-11-22 11:29:57] 2025-11-22 16:29:23,042 | INFO     | left removable region: 20
[2025-11-22 11:29:57] 2025-11-22 16:29:23,044 | INFO     | sum of square deviations: 1179514932602.9727
[2025-11-22 11:29:57] 2025-11-22 16:29:23,091 | INFO     | sum of deviations: 3714434130805.087
[2025-11-22 11:29:57] 2025-11-22 16:29:23,092 | INFO     | mean x: 1763780671.9378603
[2025-11-22 11:29:57] 2025-11-22 16:29:23,092 | INFO     | mean y: 3018053.8462524023
[2025-11-22 11:29:57] 2025-11-22 16:29:23,092 | INFO     | intersect: -5551339034.827884
[2025-11-22 11:29:57] 2025-11-22 16:29:23,094 | INFO     | chi2: 0.28605413732440416
[2025-11-22 11:29:57] 2025-11-22 16:29:23,096 | INFO     | current memory leak: 3.15 B/s (using 1561 data points, chi2=0.29)
[2025-11-22 11:29:57] 2025-11-22 16:29:23,098 | INFO     | could have reported an average CPU frequency of 2522 MHz (56 samples)
[2025-11-22 11:29:57] 2025-11-22 16:29:23,099 | INFO     | ..............................
[2025-11-22 11:29:57] 2025-11-22 16:29:23,099 | INFO     | . Timing measurements:
[2025-11-22 11:29:57] 2025-11-22 16:29:23,099 | INFO     | . get job = 0 s
[2025-11-22 11:29:57] 2025-11-22 16:29:23,099 | INFO     | . initial setup = 0 s
[2025-11-22 11:29:57] 2025-11-22 16:29:23,099 | INFO     | . payload setup = 7 s
[2025-11-22 11:29:57] 2025-11-22 16:29:23,099 | INFO     | . stage-in = 0 s
[2025-11-22 11:29:57] 2025-11-22 16:29:23,099 | INFO     | . payload execution = 97081 s
[2025-11-22 11:29:57] 2025-11-22 16:29:23,099 | INFO     | . stage-out = 4 s
[2025-11-22 11:29:57] 2025-11-22 16:29:23,100 | INFO     | . log creation = 0 s
[2025-11-22 11:29:57] 2025-11-22 16:29:23,100 | INFO     | ..............................
[2025-11-22 11:29:57] 2025-11-22 16:29:23,216 | INFO     | 
[2025-11-22 11:29:57] 2025-11-22 16:29:23,216 | INFO     | job summary report
[2025-11-22 11:29:57] 2025-11-22 16:29:23,216 | INFO     | --------------------------------------------------
[2025-11-22 11:29:57] 2025-11-22 16:29:23,216 | INFO     | PanDA job id: 6893883561
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | task id: 47523449
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | errors: (none)
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | pilot state: finished 
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | transexitcode: 0
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | exeerrorcode: 0
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | exeerrordiag: 
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | exitcode: 0
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | exitmsg: OK
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | cpuconsumptiontime: 275902 s
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | nevents: 1000
[2025-11-22 11:29:57] 2025-11-22 16:29:23,217 | INFO     | neventsw: 0
[2025-11-22 11:29:57] 2025-11-22 16:29:23,218 | INFO     | pid: 128457
[2025-11-22 11:29:57] 2025-11-22 16:29:23,218 | INFO     | pgrp: 128457
[2025-11-22 11:29:57] 2025-11-22 16:29:23,218 | INFO     | corecount: 8
[2025-11-22 11:29:57] 2025-11-22 16:29:23,218 | INFO     | event service: False
[2025-11-22 11:29:57] 2025-11-22 16:29:23,218 | INFO     | sizes: {0: 2298808, 5: 2299070, 11: 2299126, 97093: 2366867, 97098: 2375863, 97100: 2375919, 97107: 2376293}
[2025-11-22 11:29:57] 2025-11-22 16:29:23,218 | INFO     | --------------------------------------------------
[2025-11-22 11:29:57] 2025-11-22 16:29:23,218 | INFO     | 
[2025-11-22 11:29:57] 2025-11-22 16:29:23,218 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-22 11:29:57] 2025-11-22 16:29:23,248 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,248 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,248 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,250 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,250 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 11:29:57] 2025-11-22 16:29:23,250 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,250 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 11:29:57] 2025-11-22 16:29:23,250 | INFO     | job 6893883561 has completed (purged errors)
[2025-11-22 11:29:57] 2025-11-22 16:29:23,250 | INFO     | overall cleanup function is called
[2025-11-22 11:29:57] 2025-11-22 16:29:24,271 | INFO     | --- collectZombieJob: --- 10, [128457]
[2025-11-22 11:29:57] 2025-11-22 16:29:24,272 | INFO     | zombie collector waiting for pid 128457
[2025-11-22 11:29:57] 2025-11-22 16:29:24,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 11:29:57] 2025-11-22 16:29:24,272 | INFO     | collected zombie processes
[2025-11-22 11:29:57] 2025-11-22 16:29:24,272 | INFO     | will attempt to kill all subprocesses of pid=128457
[2025-11-22 11:29:57] 2025-11-22 16:29:24,851 | INFO     | process IDs to be killed: [128457] (in reverse order)
[2025-11-22 11:29:57] 2025-11-22 16:29:25,026 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 11:29:57] 2025-11-22 16:29:25,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 11:29:57] 2025-11-22 16:29:25,048 | INFO     | did not find any defunct processes belonging to 128457
[2025-11-22 11:29:57] 2025-11-22 16:29:25,068 | INFO     | did not find any defunct processes belonging to 128457
[2025-11-22 11:29:57] 2025-11-22 16:29:25,069 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 11:29:57] 2025-11-22 16:29:25,069 | INFO     | ready for new job
[2025-11-22 11:29:57] 2025-11-22 16:29:25,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 11:29:57] 2025-11-22 16:29:25,076 | INFO     | ***************************************
[2025-11-22 11:29:57] 2025-11-22 16:29:25,076 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 11:29:57] 2025-11-22 16:29:25,076 | INFO     | ***************************************
[2025-11-22 11:29:57] 2025-11-22 16:29:25,076 | INFO     | 
[2025-11-22 11:29:57] 2025-11-22 16:29:25,083 | INFO     | architecture information:
[2025-11-22 11:29:57] 2025-11-22 16:29:25,084 | INFO     | executing command: cat /etc/os-release
[2025-11-22 11:29:57] 2025-11-22 16:29:25,103 | INFO     | cat /etc/os-release:
[2025-11-22 11:29:57] NAME="CentOS Linux"
[2025-11-22 11:29:57] VERSION="7 (Core)"
[2025-11-22 11:29:57] ID="centos"
[2025-11-22 11:29:57] ID_LIKE="rhel fedora"
[2025-11-22 11:29:57] VERSION_ID="7"
[2025-11-22 11:29:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 11:29:57] ANSI_COLOR="0;31"
[2025-11-22 11:29:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 11:29:57] HOME_URL="https://www.centos.org/"
[2025-11-22 11:29:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 11:29:57] 
[2025-11-22 11:29:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 11:29:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 11:29:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 11:29:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 11:29:57] 
[2025-11-22 11:29:57] 2025-11-22 16:29:25,103 | INFO     | ***************************************
[2025-11-22 11:29:57] 2025-11-22 16:29:25,608 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-22 11:29:57] 2025-11-22 16:29:25,637 | INFO     | sufficient remaining disk space (401732534272 B)
[2025-11-22 11:29:57] 2025-11-22 16:29:25,637 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 11:29:57] 2025-11-22 16:29:25,638 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 11:29:57] 2025-11-22 16:29:25,638 | INFO     | update_server=False
[2025-11-22 11:29:57] 2025-11-22 16:29:25,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 11:29:57] 2025-11-22 16:29:25,638 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 11:29:57] 2025-11-22 16:29:25,639 | INFO     | aborting loop
[2025-11-22 11:29:57] 2025-11-22 16:29:25,884 | INFO     | all data control threads have been joined
[2025-11-22 11:29:57] 2025-11-22 16:29:26,547 | INFO     | all job control threads have been joined
[2025-11-22 11:29:57] 2025-11-22 16:29:26,643 | INFO     | [job] retrieve thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:26,647 | INFO     | [job] job monitor thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:26,783 | INFO     | all payload control threads have been joined
[2025-11-22 11:29:57] 2025-11-22 16:29:26,795 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 11:29:57] 2025-11-22 16:29:26,890 | INFO     | [data] control thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:26,983 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 11:29:57] 2025-11-22 16:29:27,186 | INFO     | [job] validate thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:27,362 | INFO     | [payload] failed_post thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:27,420 | INFO     | [payload] validate_post thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:27,504 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:27,553 | INFO     | [job] control thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:27,572 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:27,763 | INFO     | [data] copytool_in thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:27,768 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:27,791 | INFO     | [payload] control thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:28,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 11:29:57] 2025-11-22 16:29:28,990 | INFO     | [data] copytool_out thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:29,271 | INFO     | [job] queue monitor thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:30,812 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:36,495 | INFO     | job.realtimelogging is not enabled
[2025-11-22 11:29:57] 2025-11-22 16:29:37,501 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 11:29:57] 2025-11-22 16:29:50,986 | INFO     | [monitor] cgroup control has ended
[2025-11-22 11:29:57] 2025-11-22 16:29:51,261 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139750705391424)>', '<ExcThread(monitor, started 139750199498496)>']
[2025-11-22 11:29:57] 2025-11-22 16:29:56,288 | INFO     | all workflow threads have been joined
[2025-11-22 11:29:57] 2025-11-22 16:29:56,292 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 11:29:57] 2025-11-22 16:29:56,292 | INFO     | traces error code: 0
[2025-11-22 11:29:57] 2025-11-22 16:29:56,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 11:29:57] 2025-11-22 16:29:56,670 | INFO     | PID=51193 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 11:29:57] 2025-11-22 16:29:56,673 | INFO     | .. there are 45 such processes running
[2025-11-22 11:29:57] 2025-11-22 16:29:56,682 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 11:29:57] 2025-11-22 16:29:56,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 11:29:57] 2025-11-22 16:29:56,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 11:29:57] 2025-11-22 16:29:56,682 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 11:29:57] 2025-11-22 16:29:56,683 | INFO     | [monitor] control thread has ended
[2025-11-22 11:29:57] 2025-11-22 16:29:56,989 [wrapper] ==== pilot stdout END ====
[2025-11-22 11:29:57] 2025-11-22 16:29:56,992 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 11:29:57] 2025-11-22 16:29:56,994 [wrapper] pilotpid: 51193
[2025-11-22 11:29:57] 2025-11-22 16:29:56,997 [wrapper] Pilot exit status: 0
[2025-11-22 11:29:57] 2025-11-22 16:29:57,012 [wrapper] pandaids: 6893883561 6893883561
[2025-11-22 11:29:57] 2025-11-22 16:29:57,105 [wrapper] cleanup supervisor_pilot 3150960 51198
[2025-11-22 11:29:57] 2025-11-22 16:29:57,108 [wrapper] Test setup, not cleaning
[2025-11-22 11:29:57] 2025-11-22 16:29:57,111 [wrapper] apfmon messages muted
[2025-11-22 11:29:57] 2025-11-22 16:29:57,118 [wrapper] ==== wrapper stdout END ====
[2025-11-22 11:29:57] 2025-11-22 16:29:57,123 [wrapper] ==== wrapper stderr END ====
[2025-11-22 11:29:57]  *** Error codes and diagnostics ***
[2025-11-22 11:29:57]     "exeErrorCode": 0,
[2025-11-22 11:29:57]     "exeErrorDiag": "",
[2025-11-22 11:29:57]     "pilotErrorCode": 0,
[2025-11-22 11:29:57]     "pilotErrorDiag": "",
[2025-11-22 11:29:57]  *** Listing of results directory ***
[2025-11-22 11:29:57] total 1730768
[2025-11-22 11:29:57] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 16:12 pilot3.tar.gz
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 16:35 queuedata.json
[2025-11-22 11:29:57] -rwx------. 1 boincer umatlas     36292 Nov 20 16:36 runpilot2-wrapper.sh
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas       100 Nov 21 07:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 11:29:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 07:37 run_atlas
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas       105 Nov 21 07:37 job.xml
[2025-11-22 11:29:57] -rw-r--r--. 3 boincer umatlas 410729465 Nov 21 07:37 EVNT.47493127._000916.pool.root.1
[2025-11-22 11:29:57] -rw-r--r--. 3 boincer umatlas 410729465 Nov 21 07:37 ATLAS.root_0
[2025-11-22 11:29:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:37 start_atlas.sh
[2025-11-22 11:29:57] drwxrwx--x. 2 boincer umatlas        68 Nov 21 07:37 shared
[2025-11-22 11:29:57] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 07:37 input.tar.gz
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas         0 Nov 21 07:37 boinc_lockfile
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 08:30 pandaJob.out
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas    989817 Nov 21 08:30 agis_schedconf.cvmfs.json
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas       533 Nov 22 11:20 boinc_task_state.xml
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas 921273414 Nov 22 11:28 HITS.47523449._009158.pool.root.1
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas      6796 Nov 22 11:28 init_data.xml
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas      1068 Nov 22 11:29 memory_monitor_summary.json
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas   1526164 Nov 22 11:29 agis_ddmendpoints.agis.ALL.json
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas   2410129 Nov 22 11:29 log.47523449._009158.job.log.tgz.1
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas      8635 Nov 22 11:29 heartbeat.json
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 11:29 boinc_mmap_file
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas        29 Nov 22 11:29 wrapper_checkpoint.txt
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas        97 Nov 22 11:29 pilot_heartbeat.json
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas       821 Nov 22 11:29 pilotlog.txt
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas  10420268 Nov 22 11:29 log.47523449._009158.job.log.1
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas       353 Nov 22 11:29 output.list
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas       620 Nov 22 11:29 runtime_log
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas  12851200 Nov 22 11:29 result.tar.gz
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas      8914 Nov 22 11:29 runtime_log.err
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas       789 Nov 22 11:29 BMpKDmeVRg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlZIKDmPxhpqm.diag
[2025-11-22 11:29:57] -rw-r--r--. 1 boincer umatlas     23425 Nov 22 11:29 stderr.txt
[2025-11-22 11:29:57] HITS file was successfully produced:
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas 921273414 Nov 22 11:28 shared/HITS.pool.root.1
[2025-11-22 11:29:57]  *** Contents of shared directory: ***
[2025-11-22 11:29:57] total 1313936
[2025-11-22 11:29:57] -rw-r--r--. 3 boincer umatlas 410729465 Nov 21 07:37 ATLAS.root_0
[2025-11-22 11:29:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:37 start_atlas.sh
[2025-11-22 11:29:57] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 07:37 input.tar.gz
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas 921273414 Nov 22 11:28 HITS.pool.root.1
[2025-11-22 11:29:57] -rw-------. 1 boincer umatlas  12851200 Nov 22 11:29 result.tar.gz
11:29:58 (4262): run_atlas exited; CPU time 280085.424563
11:29:58 (4262): called boinc_finish(0)

</stderr_txt>
]]>

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