Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:35:56 (1680730): wrapper (7.7.26015): starting
10:35:56 (1680730): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 10:35:56] Arguments: --nthreads 3
[2025-11-21 10:35:56] Threads: 3
[2025-11-21 10:35:56] Checking for CVMFS
[2025-11-21 10:35:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 10:35:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 10:35:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 10:35:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 10:35:56] 2.9.2.0 16720 1242 69868 153117 0 88 34492239 36864001 0 130560 0 17602743 100.000 32227 1352 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 10:35:56] CVMFS is ok
[2025-11-21 10:35:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 10:35:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 10:35:56] Further information can be found at the LHC@home message board.
[2025-11-21 10:35:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 10:35:56] Checking for apptainer binary...
[2025-11-21 10:35:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 10:35:56] Running /usr/bin/apptainer --version
[2025-11-21 10:35:56] apptainer version 1.4.1-1.1
[2025-11-21 10:35:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 10:35:56] thA335
[2025-11-21 10:35:56] apptainer works
[2025-11-21 10:35:56] Set ATHENA_PROC_NUMBER=3
[2025-11-21 10:35:56] Set ATHENA_CORE_NUMBER=3
[2025-11-21 10:35:56] Starting ATLAS job with PandaID=6893873159
[2025-11-21 10:35:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 10:40:12]  *** The last 200 lines of the pilot log: ***
[2025-11-21 10:40:12] 2025-11-21 09:39:19,864 | INFO     | executing command: cat /etc/os-release
[2025-11-21 10:40:12] 2025-11-21 09:39:19,874 | INFO     | cat /etc/os-release:
[2025-11-21 10:40:12] NAME="CentOS Linux"
[2025-11-21 10:40:12] VERSION="7 (Core)"
[2025-11-21 10:40:12] ID="centos"
[2025-11-21 10:40:12] ID_LIKE="rhel fedora"
[2025-11-21 10:40:12] VERSION_ID="7"
[2025-11-21 10:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 10:40:12] ANSI_COLOR="0;31"
[2025-11-21 10:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 10:40:12] HOME_URL="https://www.centos.org/"
[2025-11-21 10:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 10:40:12] 
[2025-11-21 10:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 10:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 10:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 10:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 10:40:12] 
[2025-11-21 10:40:12] 2025-11-21 09:39:19,874 | INFO     | ***************************************
[2025-11-21 10:40:12] 2025-11-21 09:39:20,377 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 10:40:12] 2025-11-21 09:39:20,390 | INFO     | sufficient remaining disk space (827557150720 B)
[2025-11-21 10:40:12] 2025-11-21 09:39:20,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 10:40:12] 2025-11-21 09:39:20,390 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 10:40:12] 2025-11-21 09:39:20,390 | INFO     | update_server=False
[2025-11-21 10:40:12] 2025-11-21 09:39:20,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 10:40:12] 2025-11-21 09:39:20,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:40:12] 2025-11-21 09:39:20,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:40:12] 2025-11-21 09:39:20,391 | INFO     | aborting loop
[2025-11-21 10:40:12] 2025-11-21 09:39:20,421 | INFO     | all data control threads have been joined
[2025-11-21 10:40:12] 2025-11-21 09:39:20,690 | INFO     | all job control threads have been joined
[2025-11-21 10:40:12] 2025-11-21 09:39:20,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 10:40:12] 2025-11-21 09:39:21,396 | INFO     | [job] queue monitor thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:21,396 | INFO     | [job] retrieve thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:21,397 | INFO     | [job] job monitor thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:21,426 | INFO     | [data] control thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:21,434 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:21,696 | INFO     | [job] control thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:21,824 | INFO     | all payload control threads have been joined
[2025-11-21 10:40:12] 2025-11-21 09:39:22,303 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:22,417 | INFO     | [data] copytool_in thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:22,447 | INFO     | [payload] validate_post thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:22,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:22,723 | INFO     | [data] copytool_out thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:22,815 | INFO     | [job] validate thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:22,830 | INFO     | [payload] control thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:22,881 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:22,986 | INFO     | [payload] failed_post thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:23,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 10:40:12] 2025-11-21 09:39:27,516 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 10:40:12] 2025-11-21 09:39:51,072 | INFO     | PID=1684464 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 10:40:12] 2025-11-21 09:39:51,072 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 10:40:12] 2025-11-21 09:39:51,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 10:40:12] 2025-11-21 09:39:51,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 10:40:12] 2025-11-21 09:40:06,001 | INFO     | [monitor] cgroup control has ended
[2025-11-21 10:40:12] 2025-11-21 09:40:07,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219714029376)>', '<ExcThread(monitor, started 140218996877056)>']
[2025-11-21 10:40:12] 2025-11-21 09:40:08,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 10:40:12] 2025-11-21 09:40:08,153 | INFO     | [monitor] control thread has ended
[2025-11-21 10:40:12] 2025-11-21 09:40:12,175 | INFO     | all workflow threads have been joined
[2025-11-21 10:40:12] 2025-11-21 09:40:12,175 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 10:40:12] 2025-11-21 09:40:12,176 | INFO     | traces error code: 0
[2025-11-21 10:40:12] 2025-11-21 09:40:12,176 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 10:40:12] 2025-11-21 09:40:12,223 [wrapper] ==== pilot stdout END ====
[2025-11-21 10:40:12] 2025-11-21 09:40:12,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 10:40:12] 2025-11-21 09:40:12,229 [wrapper] pilotpid: 1684464
[2025-11-21 10:40:12] 2025-11-21 09:40:12,232 [wrapper] Pilot exit status: 0
[2025-11-21 10:40:12] 2025-11-21 09:40:12,240 [wrapper] pandaids: 6893873159
[2025-11-21 10:40:12] 2025-11-21 09:40:12,255 [wrapper] cleanup supervisor_pilot 1684470 1684465
[2025-11-21 10:40:12] 2025-11-21 09:40:12,258 [wrapper] Test setup, not cleaning
[2025-11-21 10:40:12] 2025-11-21 09:40:12,260 [wrapper] apfmon messages muted
[2025-11-21 10:40:12] 2025-11-21 09:40:12,263 [wrapper] ==== wrapper stdout END ====
[2025-11-21 10:40:12] 2025-11-21 09:40:12,265 [wrapper] ==== wrapper stderr END ====
[2025-11-21 10:40:12]  *** Error codes and diagnostics ***
[2025-11-21 10:40:12]     "exeErrorCode": 65,
[2025-11-21 10:40:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 10:40:12]     "pilotErrorCode": 1305,
[2025-11-21 10:40:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 10:40:12]  *** Listing of results directory ***
[2025-11-21 10:40:12] total 402628
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc    576529 Nov 20 16:07 pilot3.tar.gz
[2025-11-21 10:40:12] -rwx------ 1 boinc boinc     36292 Nov 20 16:20 runpilot2-wrapper.sh
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc      5112 Nov 20 16:20 queuedata.json
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc       100 Nov 21 10:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 10:40:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 10:35 run_atlas
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc       105 Nov 21 10:35 job.xml
[2025-11-21 10:40:12] -rw-r--r-- 2 boinc boinc 408093975 Nov 21 10:35 EVNT.47493127._000689.pool.root.1
[2025-11-21 10:40:12] -rw-r--r-- 2 boinc boinc    590093 Nov 21 10:35 input.tar.gz
[2025-11-21 10:40:12] -rw-r--r-- 2 boinc boinc     15847 Nov 21 10:35 start_atlas.sh
[2025-11-21 10:40:12] drwxrwx--x 2 boinc boinc      4096 Nov 21 10:35 shared
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc         0 Nov 21 10:35 boinc_setup_complete
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc      6194 Nov 21 10:35 init_data.xml
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc         0 Nov 21 10:35 boinc_lockfile
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc      2782 Nov 21 10:35 pandaJob.out
[2025-11-21 10:40:12] -rw------- 1 boinc boinc    989817 Nov 21 10:36 agis_schedconf.cvmfs.json
[2025-11-21 10:40:12] -rw------- 1 boinc boinc   1526164 Nov 21 10:36 agis_ddmendpoints.agis.ALL.json
[2025-11-21 10:40:12] drwx------ 5 boinc boinc      4096 Nov 21 10:36 pilot3
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc       522 Nov 21 10:36 boinc_task_state.xml
[2025-11-21 10:40:12] -rw------- 1 boinc boinc       983 Nov 21 10:37 memory_monitor_summary.json
[2025-11-21 10:40:12] -rw------- 1 boinc boinc     54343 Nov 21 10:37 log.47523449._006881.job.log.tgz.1
[2025-11-21 10:40:12] -rw------- 1 boinc boinc        95 Nov 21 10:39 pilot_heartbeat.json
[2025-11-21 10:40:12] -rw------- 1 boinc boinc      8383 Nov 21 10:39 heartbeat.json
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc      8192 Nov 21 10:39 boinc_mmap_file
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc        22 Nov 21 10:39 wrapper_checkpoint.txt
[2025-11-21 10:40:12] -rw------- 1 boinc boinc      4752 Nov 21 10:40 pilotlog.txt
[2025-11-21 10:40:12] -rw------- 1 boinc boinc     91886 Nov 21 10:40 log.47523449._006881.job.log.1
[2025-11-21 10:40:12] -rw------- 1 boinc boinc       186 Nov 21 10:40 output.list
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc       620 Nov 21 10:40 runtime_log
[2025-11-21 10:40:12] -rw------- 1 boinc boinc    163840 Nov 21 10:40 result.tar.gz
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc      8744 Nov 21 10:40 runtime_log.err
[2025-11-21 10:40:12] -rw------- 1 boinc boinc       649 Nov 21 10:40 fWULDmjdLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkrGKDmgd2Wln.diag
[2025-11-21 10:40:12] -rw-r--r-- 1 boinc boinc      9260 Nov 21 10:40 stderr.txt
[2025-11-21 10:40:12] No HITS result produced
[2025-11-21 10:40:12]  *** Contents of shared directory: ***
[2025-11-21 10:40:12] total 399292
[2025-11-21 10:40:12] -rw-r--r-- 2 boinc boinc 408093975 Nov 21 10:35 ATLAS.root_0
[2025-11-21 10:40:12] -rw-r--r-- 2 boinc boinc    590093 Nov 21 10:35 input.tar.gz
[2025-11-21 10:40:12] -rw-r--r-- 2 boinc boinc     15847 Nov 21 10:35 start_atlas.sh
[2025-11-21 10:40:12] -rw------- 1 boinc boinc    163840 Nov 21 10:40 result.tar.gz
10:40:13 (1680730): run_atlas exited; CPU time 31.068173
10:40:13 (1680730): called boinc_finish(0)

</stderr_txt>
]]>

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