Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:27:18 (3360483): wrapper (7.7.26015): starting
10:27:18 (3360483): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 10:27:18] Arguments: --nthreads 4
[2025-11-21 10:27:18] Threads: 4
[2025-11-21 10:27:18] Checking for CVMFS
[2025-11-21 10:27:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 10:27:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 10:27:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 10:27:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 10:27:18] 2.9.2.0 1896247 4649 92344 153117 2 12 33499507 36864001 0 130560 0 4287247 99.946 455766 6399 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 10:27:18] CVMFS is ok
[2025-11-21 10:27:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 10:27:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 10:27:18] Further information can be found at the LHC@home message board.
[2025-11-21 10:27:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 10:27:18] Checking for apptainer binary...
[2025-11-21 10:27:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 10:27:18] Running /usr/bin/apptainer --version
[2025-11-21 10:27:18] apptainer version 1.4.1-1.1
[2025-11-21 10:27:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 10:27:18] cosA131
[2025-11-21 10:27:18] apptainer works
[2025-11-21 10:27:18] Set ATHENA_PROC_NUMBER=4
[2025-11-21 10:27:18] Set ATHENA_CORE_NUMBER=4
[2025-11-21 10:27:18] Starting ATLAS job with PandaID=6893883471
[2025-11-21 10:27:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 10:37:33]  *** The last 200 lines of the pilot log: ***
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | WARNING  | wrong length of table data, x=[1763717270.0, 1763717331.0, 1763717392.0, 1763717453.0, 1763717514.0, 1763717575.0, 1763717636.0], y=[2404.0, 837821.0, 1066627.0, 1
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | could have reported an average CPU frequency of 3590 MHz (4 samples)
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | ..............................
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . Timing measurements:
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . get job = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . initial setup = 1 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . payload setup = 4 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . stage-in = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . payload execution = 399 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . stage-out = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . log creation = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | ..............................
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893883471/pilotlog.txt
[2025-11-21 10:37:33] 2025-11-21 09:36:33,047 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 10:37:33] - Log from pilotlog.txt -
[2025-11-21 10:37:33] 2025-11-21 09:36:33,028 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 10:37:33] 2025-11-21 09:36:33,029 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3588.1435000000006
[2025-11-21 10:37:33] 2025-11-21 09:36:33,030 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893883471/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | INFO     | extracted standard info from prmon json
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | WARNING  | wrong length of table data, x=[1763717270.0, 1763717331.0, 1763717392.0, 1763717453.0, 1763717514.0, 1763717575.0, 1763717636.0], y=[2404.0, 837821.0, 1066627.0, 1
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | could have reported an average CPU frequency of 3590 MHz (4 samples)
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | ..............................
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . Timing measurements:
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . get job = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . initial setup = 1 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . payload setup = 4 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . stage-in = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . payload execution = 399 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . stage-out = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . log creation = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | ..............................
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893883471/pilotlog.txt
[2025-11-21 10:37:33] 2025-11-21 09:36:33,047 | WARNING  | 
[2025-11-21 10:37:33] [begin log extracts]
[2025-11-21 10:37:33] - Log from pilotlog.txt -
[2025-11-21 10:37:33] 2025-11-21 09:36:33,028 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 10:37:33] 2025-11-21 09:36:33,029 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3588.1435000000006
[2025-11-21 10:37:33] 2025-11-21 09:36:33,030 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893883471/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | INFO     | extracted standard info from prmon json
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 10:37:33] 2025-11-21 09:36:33,031 | WARNING  | wrong length of table data, x=[1763717270.0, 1763717331.0, 1763717392.0, 1763717453.0, 1763717514.0, 1763717575.0, 1763717636.0], y=[2404.0, 837821.0, 1066627.0, 1
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | could have reported an average CPU frequency of 3590 MHz (4 samples)
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | ..............................
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . Timing measurements:
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . get job = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . initial setup = 1 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . payload setup = 4 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . stage-in = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . payload execution = 399 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . stage-out = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | . log creation = 0 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | ..............................
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 10:37:33] 2025-11-21 09:36:33,032 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893883471/pilotlog.txt
[2025-11-21 10:37:33] [end log extracts]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,047 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 10:37:33] 2025-11-21 09:36:33,048 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | 
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | job summary report
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | --------------------------------------------------
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | PanDA job id: 6893883471
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | task id: 47523449
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 09:34:21,218 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | pilot state: failed 
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | transexitcode: 65
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | exeerrorcode: 65
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 146366003; Curre
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | exitcode: 65
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 146366003; Current al
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | cpuconsumptiontime: 90 s
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | nevents: 0
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | neventsw: 0
[2025-11-21 10:37:33] 2025-11-21 09:36:33,088 | INFO     | pid: 3370829
[2025-11-21 10:37:33] 2025-11-21 09:36:33,089 | INFO     | pgrp: 3370829
[2025-11-21 10:37:33] 2025-11-21 09:36:33,089 | INFO     | corecount: 4
[2025-11-21 10:37:33] 2025-11-21 09:36:33,089 | INFO     | event service: False
[2025-11-21 10:37:33] 2025-11-21 09:36:33,089 | INFO     | sizes: {0: 2298810, 4: 2299072, 11: 2299100, 407: 2325108, 408: 2329404, 411: 2329460, 532: 2329834}
[2025-11-21 10:37:33] 2025-11-21 09:36:33,089 | INFO     | --------------------------------------------------
[2025-11-21 10:37:33] 2025-11-21 09:36:33,089 | INFO     | 
[2025-11-21 10:37:33] 2025-11-21 09:36:33,089 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,110 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 10:37:33] 2025-11-21 09:36:33,111 | INFO     | job 6893883471 has completed (purged errors)
[2025-11-21 10:37:33] 2025-11-21 09:36:33,111 | INFO     | overall cleanup function is called
[2025-11-21 10:37:33] 2025-11-21 09:36:34,119 | INFO     | --- collectZombieJob: --- 10, [3370829]
[2025-11-21 10:37:33] 2025-11-21 09:36:34,119 | INFO     | zombie collector waiting for pid 3370829
[2025-11-21 10:37:33] 2025-11-21 09:36:34,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 10:37:33] 2025-11-21 09:36:34,119 | INFO     | collected zombie processes
[2025-11-21 10:37:33] 2025-11-21 09:36:34,119 | INFO     | will attempt to kill all subprocesses of pid=3370829
[2025-11-21 10:37:33] 2025-11-21 09:36:34,173 | INFO     | process IDs to be killed: [3370829] (in reverse order)
[2025-11-21 10:37:33] 2025-11-21 09:36:34,210 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 10:37:33] 2025-11-21 09:36:34,211 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 10:37:33] 2025-11-21 09:36:34,213 | INFO     | did not find any defunct processes belonging to 3370829
[2025-11-21 10:37:33] 2025-11-21 09:36:34,215 | INFO     | did not find any defunct processes belonging to 3370829
[2025-11-21 10:37:33] 2025-11-21 09:36:34,215 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 10:37:33] 2025-11-21 09:36:34,216 | INFO     | ready for new job
[2025-11-21 10:37:33] 2025-11-21 09:36:34,216 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 10:37:33] 2025-11-21 09:36:34,216 | INFO     | ***************************************
[2025-11-21 10:37:33] 2025-11-21 09:36:34,216 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 10:37:33] 2025-11-21 09:36:34,216 | INFO     | ***************************************
[2025-11-21 10:37:33] 2025-11-21 09:36:34,216 | INFO     | 
[2025-11-21 10:37:33] 2025-11-21 09:36:34,217 | INFO     | architecture information:
[2025-11-21 10:37:33] 2025-11-21 09:36:34,217 | INFO     | executing command: cat /etc/os-release
[2025-11-21 10:37:33] 2025-11-21 09:36:34,233 | INFO     | cat /etc/os-release:
[2025-11-21 10:37:33] NAME="CentOS Linux"
[2025-11-21 10:37:33] VERSION="7 (Core)"
[2025-11-21 10:37:33] ID="centos"
[2025-11-21 10:37:33] ID_LIKE="rhel fedora"
[2025-11-21 10:37:33] VERSION_ID="7"
[2025-11-21 10:37:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 10:37:33] ANSI_COLOR="0;31"
[2025-11-21 10:37:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 10:37:33] HOME_URL="https://www.centos.org/"
[2025-11-21 10:37:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 10:37:33] 
[2025-11-21 10:37:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 10:37:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 10:37:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 10:37:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 10:37:33] 
[2025-11-21 10:37:33] 2025-11-21 09:36:34,233 | INFO     | ***************************************
[2025-11-21 10:37:33] 2025-11-21 09:36:34,736 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 10:37:33] 2025-11-21 09:36:34,754 | INFO     | sufficient remaining disk space (326570606592 B)
[2025-11-21 10:37:33] 2025-11-21 09:36:34,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 10:37:33] 2025-11-21 09:36:34,755 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 10:37:33] 2025-11-21 09:36:34,755 | INFO     | update_server=False
[2025-11-21 10:37:33] 2025-11-21 09:36:34,755 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 10:37:33] 2025-11-21 09:36:34,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:37:33] 2025-11-21 09:36:34,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:37:33] 2025-11-21 09:36:34,755 | INFO     | aborting loop
[2025-11-21 10:37:33] 2025-11-21 09:36:34,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 10:37:33] 2025-11-21 09:36:34,865 | INFO     | all job control threads have been joined
[2025-11-21 10:37:33] 2025-11-21 09:36:34,994 | INFO     | all payload control threads have been joined
[2025-11-21 10:37:33] 2025-11-21 09:36:35,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 10:37:33] 2025-11-21 09:36:35,668 | INFO     | all data control threads have been joined
[2025-11-21 10:37:33] 2025-11-21 09:36:35,760 | INFO     | [job] retrieve thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:35,761 | INFO     | [job] job monitor thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:35,761 | INFO     | [job] queue monitor thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:35,871 | INFO     | [job] control thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:35,885 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:35,900 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:35,997 | INFO     | [payload] control thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:36,247 | INFO     | [job] validate thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:36,369 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:36,371 | INFO     | [payload] failed_post thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:36,427 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:36,673 | INFO     | [data] control thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:36,761 | INFO     | [data] copytool_out thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:37,078 | INFO     | [data] copytool_in thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:37,087 | INFO     | [payload] validate_post thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:36:39,047 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 10:37:33] 2025-11-21 09:37:05,416 | INFO     | PID=3364269 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 10:37:33] 2025-11-21 09:37:05,416 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 10:37:33] 2025-11-21 09:37:05,416 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 10:37:33] 2025-11-21 09:37:05,416 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 10:37:33] 2025-11-21 09:37:26,807 | INFO     | [monitor] cgroup control has ended
[2025-11-21 10:37:33] 2025-11-21 09:37:28,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140318416566080)>', '<ExcThread(monitor, started 140317042927360)>']
[2025-11-21 10:37:33] 2025-11-21 09:37:28,532 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 10:37:33] 2025-11-21 09:37:28,532 | INFO     | [monitor] control thread has ended
[2025-11-21 10:37:33] 2025-11-21 09:37:33,234 | INFO     | all workflow threads have been joined
[2025-11-21 10:37:33] 2025-11-21 09:37:33,234 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 10:37:33] 2025-11-21 09:37:33,235 | INFO     | traces error code: 0
[2025-11-21 10:37:33] 2025-11-21 09:37:33,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 10:37:33] 2025-11-21 09:37:33,314 [wrapper] ==== pilot stdout END ====
[2025-11-21 10:37:33] 2025-11-21 09:37:33,318 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 10:37:33] 2025-11-21 09:37:33,323 [wrapper] pilotpid: 3364269
[2025-11-21 10:37:33] 2025-11-21 09:37:33,327 [wrapper] Pilot exit status: 0
[2025-11-21 10:37:33] 2025-11-21 09:37:33,338 [wrapper] pandaids: 6893883471
[2025-11-21 10:37:33] 2025-11-21 09:37:33,365 [wrapper] cleanup supervisor_pilot 3364275 3364270
[2025-11-21 10:37:33] 2025-11-21 09:37:33,369 [wrapper] Test setup, not cleaning
[2025-11-21 10:37:33] 2025-11-21 09:37:33,372 [wrapper] apfmon messages muted
[2025-11-21 10:37:33] 2025-11-21 09:37:33,377 [wrapper] ==== wrapper stdout END ====
[2025-11-21 10:37:33] 2025-11-21 09:37:33,380 [wrapper] ==== wrapper stderr END ====
[2025-11-21 10:37:33]  *** Error codes and diagnostics ***
[2025-11-21 10:37:33]     "exeErrorCode": 65,
[2025-11-21 10:37:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 146366003; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2025-11-21 10:37:33]     "pilotErrorCode": 1305,
[2025-11-21 10:37:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 146366003; Current algorit",
[2025-11-21 10:37:33]  *** Listing of results directory ***
[2025-11-21 10:37:33] total 406896
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc    576529 Nov 20 22:12 pilot3.tar.gz
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc      5112 Nov 20 22:14 queuedata.json
[2025-11-21 10:37:33] -rwx------ 1 boinc boinc     36292 Nov 20 22:16 runpilot2-wrapper.sh
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc       100 Nov 21 10:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 10:37:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 10:27 run_atlas
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc       105 Nov 21 10:27 job.xml
[2025-11-21 10:37:33] -rw-r--r-- 2 boinc boinc 411696635 Nov 21 10:27 EVNT.47493127._000908.pool.root.1
[2025-11-21 10:37:33] drwxrwx--x 2 boinc boinc      4096 Nov 21 10:27 shared
[2025-11-21 10:37:33] -rw-r--r-- 2 boinc boinc    590103 Nov 21 10:27 input.tar.gz
[2025-11-21 10:37:33] -rw-r--r-- 2 boinc boinc     15847 Nov 21 10:27 start_atlas.sh
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc         0 Nov 21 10:27 boinc_setup_complete
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc      6379 Nov 21 10:27 init_data.xml
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc         0 Nov 21 10:27 boinc_lockfile
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc      2786 Nov 21 10:27 pandaJob.out
[2025-11-21 10:37:33] -rw------- 1 boinc boinc    989817 Nov 21 10:27 agis_schedconf.cvmfs.json
[2025-11-21 10:37:33] -rw------- 1 boinc boinc   1526164 Nov 21 10:27 agis_ddmendpoints.agis.ALL.json
[2025-11-21 10:37:33] drwx------ 5 boinc boinc      4096 Nov 21 10:27 pilot3
[2025-11-21 10:37:33] -rw------- 1 boinc boinc      1004 Nov 21 10:34 memory_monitor_summary.json
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc       525 Nov 21 10:34 boinc_task_state.xml
[2025-11-21 10:37:33] -rw------- 1 boinc boinc    386978 Nov 21 10:34 log.47523449._009077.job.log.tgz.1
[2025-11-21 10:37:33] -rw------- 1 boinc boinc        95 Nov 21 10:36 pilot_heartbeat.json
[2025-11-21 10:37:33] -rw------- 1 boinc boinc     10211 Nov 21 10:36 heartbeat.json
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc      8192 Nov 21 10:37 boinc_mmap_file
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc        23 Nov 21 10:37 wrapper_checkpoint.txt
[2025-11-21 10:37:33] -rw------- 1 boinc boinc      4752 Nov 21 10:37 pilotlog.txt
[2025-11-21 10:37:33] -rw------- 1 boinc boinc    138974 Nov 21 10:37 log.47523449._009077.job.log.1
[2025-11-21 10:37:33] -rw------- 1 boinc boinc       186 Nov 21 10:37 output.list
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc       620 Nov 21 10:37 runtime_log
[2025-11-21 10:37:33] -rw------- 1 boinc boinc    542720 Nov 21 10:37 result.tar.gz
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc      8749 Nov 21 10:37 runtime_log.err
[2025-11-21 10:37:33] -rw------- 1 boinc boinc       651 Nov 21 10:37 0ODODmfBRg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbYIKDmAKzxmn.diag
[2025-11-21 10:37:33] -rw-r--r-- 1 boinc boinc     22739 Nov 21 10:37 stderr.txt
[2025-11-21 10:37:33] No HITS result produced
[2025-11-21 10:37:33]  *** Contents of shared directory: ***
[2025-11-21 10:37:33] total 403180
[2025-11-21 10:37:33] -rw-r--r-- 2 boinc boinc 411696635 Nov 21 10:27 ATLAS.root_0
[2025-11-21 10:37:33] -rw-r--r-- 2 boinc boinc    590103 Nov 21 10:27 input.tar.gz
[2025-11-21 10:37:33] -rw-r--r-- 2 boinc boinc     15847 Nov 21 10:27 start_atlas.sh
[2025-11-21 10:37:33] -rw------- 1 boinc boinc    542720 Nov 21 10:37 result.tar.gz
10:37:34 (3360483): run_atlas exited; CPU time 81.673989
10:37:34 (3360483): called boinc_finish(0)

</stderr_txt>
]]>

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