Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:43:16 (1430788): wrapper (7.7.26015): starting
09:43:16 (1430788): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 09:43:16] Arguments: --nthreads 3
[2025-11-21 09:43:16] Threads: 3
[2025-11-21 09:43:16] Checking for CVMFS
[2025-11-21 09:43:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 09:43:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 09:43:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 09:43:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 09:43:16] 2.9.2.0 16720 1190 72344 153114 0 88 34483345 36864001 0 130560 0 16850985 100.000 28342 1193 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 09:43:16] CVMFS is ok
[2025-11-21 09:43:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 09:43:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 09:43:16] Further information can be found at the LHC@home message board.
[2025-11-21 09:43:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 09:43:16] Checking for apptainer binary...
[2025-11-21 09:43:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 09:43:16] Running /usr/bin/apptainer --version
[2025-11-21 09:43:16] apptainer version 1.4.1-1.1
[2025-11-21 09:43:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 09:43:16] thA335
[2025-11-21 09:43:16] apptainer works
[2025-11-21 09:43:17] Set ATHENA_PROC_NUMBER=3
[2025-11-21 09:43:17] Set ATHENA_CORE_NUMBER=3
[2025-11-21 09:43:17] Starting ATLAS job with PandaID=6893883401
[2025-11-21 09:43:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 09:47:34]  *** The last 200 lines of the pilot log: ***
[2025-11-21 09:47:34] 2025-11-21 08:46:43,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 09:47:34] 2025-11-21 08:46:43,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 09:47:34] 2025-11-21 08:46:43,566 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-21 09:47:34] 2025-11-21 08:46:43,566 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 09:47:34] 2025-11-21 08:46:43,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 09:47:34] 2025-11-21 08:46:43,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 09:47:34] 2025-11-21 08:46:43,983 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 09:47:34] 2025-11-21 08:46:43,983 | INFO     | aborting loop
[2025-11-21 09:47:34] 2025-11-21 08:46:44,031 | INFO     | all job control threads have been joined
[2025-11-21 09:47:34] 2025-11-21 08:46:44,245 | INFO     | all data control threads have been joined
[2025-11-21 09:47:34] 2025-11-21 08:46:44,570 | INFO     | [job] retrieve thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:44,609 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:44,967 | INFO     | all payload control threads have been joined
[2025-11-21 09:47:34] 2025-11-21 08:46:44,972 | INFO     | [payload] failed_post thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:44,989 | INFO     | [job] job monitor thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:45,037 | INFO     | [job] control thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:45,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 09:47:34] 2025-11-21 08:46:45,247 | INFO     | [data] control thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:45,572 | INFO     | [data] copytool_out thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:45,682 | INFO     | [payload] validate_post thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:45,785 | INFO     | [data] copytool_in thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:45,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:45,956 | INFO     | [job] validate thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:45,973 | INFO     | [payload] control thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:46,010 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:46,046 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:46,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 09:47:34] 2025-11-21 08:46:47,524 | INFO     | [job] queue monitor thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:46:49,165 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 09:47:34] 2025-11-21 08:47:27,679 | INFO     | [monitor] cgroup control has ended
[2025-11-21 09:47:34] 2025-11-21 08:47:29,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139834532710208)>', '<ExcThread(monitor, started 139834035255040)>']
[2025-11-21 09:47:34] 2025-11-21 08:47:29,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 09:47:34] 2025-11-21 08:47:29,812 | INFO     | [monitor] control thread has ended
[2025-11-21 09:47:34] 2025-11-21 08:47:34,119 | INFO     | all workflow threads have been joined
[2025-11-21 09:47:34] 2025-11-21 08:47:34,119 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 09:47:34] 2025-11-21 08:47:34,120 | INFO     | traces error code: 0
[2025-11-21 09:47:34] 2025-11-21 08:47:34,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 09:47:34] 2025-11-21 08:47:34,165 [wrapper] ==== pilot stdout END ====
[2025-11-21 09:47:34] 2025-11-21 08:47:34,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 09:47:34] 2025-11-21 08:47:34,171 [wrapper] pilotpid: 1434519
[2025-11-21 09:47:34] 2025-11-21 08:47:34,174 [wrapper] Pilot exit status: 0
[2025-11-21 09:47:34] 2025-11-21 08:47:34,181 [wrapper] pandaids: 6893883401
[2025-11-21 09:47:34] 2025-11-21 08:47:34,199 [wrapper] cleanup supervisor_pilot 1434525 1434520
[2025-11-21 09:47:34] 2025-11-21 08:47:34,202 [wrapper] Test setup, not cleaning
[2025-11-21 09:47:34] 2025-11-21 08:47:34,204 [wrapper] apfmon messages muted
[2025-11-21 09:47:34] 2025-11-21 08:47:34,207 [wrapper] ==== wrapper stdout END ====
[2025-11-21 09:47:34] 2025-11-21 08:47:34,209 [wrapper] ==== wrapper stderr END ====
[2025-11-21 09:47:34]  *** Error codes and diagnostics ***
[2025-11-21 09:47:34]     "exeErrorCode": 65,
[2025-11-21 09:47:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 09:47:34]     "pilotErrorCode": 1305,
[2025-11-21 09:47:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 09:47:34]  *** Listing of results directory ***
[2025-11-21 09:47:34] total 403948
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc    576529 Nov 20 22:04 pilot3.tar.gz
[2025-11-21 09:47:34] -rwx------ 1 boinc boinc     36292 Nov 20 22:09 runpilot2-wrapper.sh
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc      5112 Nov 20 22:09 queuedata.json
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc       100 Nov 21 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 09:47:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 09:43 run_atlas
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc       105 Nov 21 09:43 job.xml
[2025-11-21 09:47:34] -rw-r--r-- 2 boinc boinc 409451404 Nov 21 09:43 EVNT.47493127._000904.pool.root.1
[2025-11-21 09:47:34] -rw-r--r-- 2 boinc boinc    590098 Nov 21 09:43 input.tar.gz
[2025-11-21 09:47:34] -rw-r--r-- 2 boinc boinc     15847 Nov 21 09:43 start_atlas.sh
[2025-11-21 09:47:34] drwxrwx--x 2 boinc boinc      4096 Nov 21 09:43 shared
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc         0 Nov 21 09:43 boinc_setup_complete
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc      6194 Nov 21 09:43 init_data.xml
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc         0 Nov 21 09:43 boinc_lockfile
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc      2786 Nov 21 09:43 pandaJob.out
[2025-11-21 09:47:34] -rw------- 1 boinc boinc    989817 Nov 21 09:43 agis_schedconf.cvmfs.json
[2025-11-21 09:47:34] -rw------- 1 boinc boinc   1526164 Nov 21 09:43 agis_ddmendpoints.agis.ALL.json
[2025-11-21 09:47:34] drwx------ 5 boinc boinc      4096 Nov 21 09:43 pilot3
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc       522 Nov 21 09:44 boinc_task_state.xml
[2025-11-21 09:47:34] -rw------- 1 boinc boinc       961 Nov 21 09:44 memory_monitor_summary.json
[2025-11-21 09:47:34] -rw------- 1 boinc boinc     55659 Nov 21 09:44 log.47523449._009040.job.log.tgz.1
[2025-11-21 09:47:34] -rw------- 1 boinc boinc        95 Nov 21 09:46 pilot_heartbeat.json
[2025-11-21 09:47:34] -rw------- 1 boinc boinc      8403 Nov 21 09:46 heartbeat.json
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc      8192 Nov 21 09:47 boinc_mmap_file
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc        22 Nov 21 09:47 wrapper_checkpoint.txt
[2025-11-21 09:47:34] -rw------- 1 boinc boinc      4556 Nov 21 09:47 pilotlog.txt
[2025-11-21 09:47:34] -rw------- 1 boinc boinc     93465 Nov 21 09:47 log.47523449._009040.job.log.1
[2025-11-21 09:47:34] -rw------- 1 boinc boinc       186 Nov 21 09:47 output.list
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc       620 Nov 21 09:47 runtime_log
[2025-11-21 09:47:34] -rw------- 1 boinc boinc    163840 Nov 21 09:47 result.tar.gz
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc      8744 Nov 21 09:47 runtime_log.err
[2025-11-21 09:47:34] -rw------- 1 boinc boinc       649 Nov 21 09:47 nAZMDmt4Qg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1XIKDm9zNlRm.diag
[2025-11-21 09:47:34] -rw-r--r-- 1 boinc boinc      7633 Nov 21 09:47 stderr.txt
[2025-11-21 09:47:34] No HITS result produced
[2025-11-21 09:47:34]  *** Contents of shared directory: ***
[2025-11-21 09:47:34] total 400616
[2025-11-21 09:47:34] -rw-r--r-- 2 boinc boinc 409451404 Nov 21 09:43 ATLAS.root_0
[2025-11-21 09:47:34] -rw-r--r-- 2 boinc boinc    590098 Nov 21 09:43 input.tar.gz
[2025-11-21 09:47:34] -rw-r--r-- 2 boinc boinc     15847 Nov 21 09:43 start_atlas.sh
[2025-11-21 09:47:34] -rw------- 1 boinc boinc    163840 Nov 21 09:47 result.tar.gz
09:47:35 (1430788): run_atlas exited; CPU time 31.882560
09:47:35 (1430788): called boinc_finish(0)

</stderr_txt>
]]>

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