Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:31:40 (4313): wrapper (7.7.26015): starting
03:31:40 (4313): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 03:31:40] Arguments: --nthreads 8
[2025-11-21 03:31:40] Threads: 8
[2025-11-21 03:31:40] Checking for CVMFS
[2025-11-21 03:31:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:31:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:31:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:31:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:31:40] 2.11.2.0 2756 65864 89664 153114 1 81 18068141 20275200 1 130560 0 19783712 99.899 3270239 30082 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 03:31:40] CVMFS is ok
[2025-11-21 03:31:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 03:31:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 03:31:40] Further information can be found at the LHC@home message board.
[2025-11-21 03:31:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:31:40] Checking for apptainer binary...
[2025-11-21 03:31:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:31:40] Running /usr/bin/apptainer --version
[2025-11-21 03:31:40] apptainer version 1.3.2-1.el7
[2025-11-21 03:31:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:31:41] c-115-14.aglt2.org
[2025-11-21 03:31:41] apptainer works
[2025-11-21 03:31:41] Set ATHENA_PROC_NUMBER=8
[2025-11-21 03:31:41] Set ATHENA_CORE_NUMBER=8
[2025-11-21 03:31:41] Starting ATLAS job with PandaID=6893882066
[2025-11-21 03:31:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 14:41:34]  *** The last 200 lines of the pilot log: ***
[2025-11-21 14:41:34] 2025-11-21 19:41:00,989 | INFO     | time since job start (40142s) is within the limit (172800.0s)
[2025-11-21 14:41:34] 2025-11-21 19:41:01,613 | INFO     | monitor loop #2952: job 0:6893882066 is in state 'finished'
[2025-11-21 14:41:34] 2025-11-21 19:41:01,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,095 | INFO     | PID=7998 has CPU usage=12.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 14:41:34] 2025-11-21 19:41:02,301 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 14:41:34] 2025-11-21 19:41:02,304 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-21 14:41:34] 2025-11-21 19:41:02,307 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893882066/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,307 | INFO     | extracted standard info from prmon json
[2025-11-21 14:41:34] 2025-11-21 19:41:02,308 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 14:41:34] 2025-11-21 19:41:02,308 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 14:41:34] 2025-11-21 19:41:02,322 | INFO     | fitting pss+swap vs Time
[2025-11-21 14:41:34] 2025-11-21 19:41:02,324 | INFO     | sum of square deviations: 88339331607.78116
[2025-11-21 14:41:34] 2025-11-21 19:41:02,334 | INFO     | sum of deviations: 652785262576.4672
[2025-11-21 14:41:34] 2025-11-21 19:41:02,334 | INFO     | mean x: 1763733989.12462
[2025-11-21 14:41:34] 2025-11-21 19:41:02,334 | INFO     | mean y: 3205179.8723404254
[2025-11-21 14:41:34] 2025-11-21 19:41:02,335 | INFO     | intersect: -13029942504.758114
[2025-11-21 14:41:34] 2025-11-21 19:41:02,335 | INFO     | chi2: 6.159789228402571
[2025-11-21 14:41:34] 2025-11-21 19:41:02,336 | INFO     | sum of square deviations: 86340898558.31517
[2025-11-21 14:41:34] 2025-11-21 19:41:02,344 | INFO     | sum of deviations: 889710324773.9359
[2025-11-21 14:41:34] 2025-11-21 19:41:02,344 | INFO     | mean x: 1763733836.6294026
[2025-11-21 14:41:34] 2025-11-21 19:41:02,344 | INFO     | mean y: 3223245.805513017
[2025-11-21 14:41:34] 2025-11-21 19:41:02,344 | INFO     | intersect: -18171387289.924206
[2025-11-21 14:41:34] 2025-11-21 19:41:02,346 | INFO     | chi2: 3.162467673980223
[2025-11-21 14:41:34] 2025-11-21 19:41:02,346 | INFO     | current chi2=3.162467673980223 (change=48.65948238296537 %)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,346 | INFO     | sum of square deviations: 84372838171.31944
[2025-11-21 14:41:34] 2025-11-21 19:41:02,355 | INFO     | sum of deviations: 981613558648.2739
[2025-11-21 14:41:34] 2025-11-21 19:41:02,355 | INFO     | mean x: 1763733684.1342592
[2025-11-21 14:41:34] 2025-11-21 19:41:02,355 | INFO     | mean y: 3230352.100308642
[2025-11-21 14:41:34] 2025-11-21 19:41:02,355 | INFO     | intersect: -20516464560.561493
[2025-11-21 14:41:34] 2025-11-21 19:41:02,356 | INFO     | chi2: 2.5340412632373766
[2025-11-21 14:41:34] 2025-11-21 19:41:02,356 | INFO     | current chi2=2.5340412632373766 (change=19.871393972287493 %)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,356 | INFO     | right removable region: 647
[2025-11-21 14:41:34] 2025-11-21 19:41:02,357 | INFO     | sum of square deviations: 86340647848.31522
[2025-11-21 14:41:34] 2025-11-21 19:41:02,366 | INFO     | sum of deviations: 447724462353.8545
[2025-11-21 14:41:34] 2025-11-21 19:41:02,366 | INFO     | mean x: 1763734141.6294026
[2025-11-21 14:41:34] 2025-11-21 19:41:02,366 | INFO     | mean y: 3220796.2679938744
[2025-11-21 14:41:34] 2025-11-21 19:41:02,366 | INFO     | intersect: -9142725406.075336
[2025-11-21 14:41:34] 2025-11-21 19:41:02,367 | INFO     | chi2: 3.775366075698795
[2025-11-21 14:41:34] 2025-11-21 19:41:02,367 | INFO     | current chi2=3.775366075698795 (change=38.709492553889426 %)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,368 | INFO     | sum of square deviations: 84372416295.85039
[2025-11-21 14:41:34] 2025-11-21 19:41:02,376 | INFO     | sum of deviations: 407640180488.8457
[2025-11-21 14:41:34] 2025-11-21 19:41:02,376 | INFO     | mean x: 1763734294.131173
[2025-11-21 14:41:34] 2025-11-21 19:41:02,376 | INFO     | mean y: 3223899.4135802467
[2025-11-21 14:41:34] 2025-11-21 19:41:02,376 | INFO     | intersect: -8518150710.422723
[2025-11-21 14:41:34] 2025-11-21 19:41:02,377 | INFO     | chi2: 3.7350150893961143
[2025-11-21 14:41:34] 2025-11-21 19:41:02,377 | INFO     | current chi2=3.7350150893961143 (change=1.0687966542479415 %)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,377 | INFO     | left removable region: 20
[2025-11-21 14:41:34] 2025-11-21 19:41:02,377 | INFO     | sum of square deviations: 76432715398.53897
[2025-11-21 14:41:34] 2025-11-21 19:41:02,385 | INFO     | sum of deviations: 691105079796.6471
[2025-11-21 14:41:34] 2025-11-21 19:41:02,385 | INFO     | mean x: 1763734263.6395535
[2025-11-21 14:41:34] 2025-11-21 19:41:02,385 | INFO     | mean y: 3252964.312599681
[2025-11-21 14:41:34] 2025-11-21 19:41:02,385 | INFO     | intersect: -15944443027.605469
[2025-11-21 14:41:34] 2025-11-21 19:41:02,386 | INFO     | chi2: 0.07481811133866902
[2025-11-21 14:41:34] 2025-11-21 19:41:02,386 | INFO     | current memory leak: 9.04 B/s (using 627 data points, chi2=0.07)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,387 | INFO     | could have reported an average CPU frequency of 2400 MHz (25 samples)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,387 | INFO     | ..............................
[2025-11-21 14:41:34] 2025-11-21 19:41:02,387 | INFO     | . Timing measurements:
[2025-11-21 14:41:34] 2025-11-21 19:41:02,387 | INFO     | . get job = 0 s
[2025-11-21 14:41:34] 2025-11-21 19:41:02,387 | INFO     | . initial setup = 2 s
[2025-11-21 14:41:34] 2025-11-21 19:41:02,387 | INFO     | . payload setup = 8 s
[2025-11-21 14:41:34] 2025-11-21 19:41:02,388 | INFO     | . stage-in = 0 s
[2025-11-21 14:41:34] 2025-11-21 19:41:02,388 | INFO     | . payload execution = 40102 s
[2025-11-21 14:41:34] 2025-11-21 19:41:02,388 | INFO     | . stage-out = 3 s
[2025-11-21 14:41:34] 2025-11-21 19:41:02,388 | INFO     | . log creation = 0 s
[2025-11-21 14:41:34] 2025-11-21 19:41:02,388 | INFO     | ..............................
[2025-11-21 14:41:34] 2025-11-21 19:41:02,473 | INFO     | 
[2025-11-21 14:41:34] 2025-11-21 19:41:02,473 | INFO     | job summary report
[2025-11-21 14:41:34] 2025-11-21 19:41:02,474 | INFO     | --------------------------------------------------
[2025-11-21 14:41:34] 2025-11-21 19:41:02,474 | INFO     | PanDA job id: 6893882066
[2025-11-21 14:41:34] 2025-11-21 19:41:02,474 | INFO     | task id: 47523449
[2025-11-21 14:41:34] 2025-11-21 19:41:02,474 | INFO     | errors: (none)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,475 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 14:41:34] 2025-11-21 19:41:02,475 | INFO     | pilot state: finished 
[2025-11-21 14:41:34] 2025-11-21 19:41:02,475 | INFO     | transexitcode: 0
[2025-11-21 14:41:34] 2025-11-21 19:41:02,475 | INFO     | exeerrorcode: 0
[2025-11-21 14:41:34] 2025-11-21 19:41:02,475 | INFO     | exeerrordiag: 
[2025-11-21 14:41:34] 2025-11-21 19:41:02,475 | INFO     | exitcode: 0
[2025-11-21 14:41:34] 2025-11-21 19:41:02,476 | INFO     | exitmsg: OK
[2025-11-21 14:41:34] 2025-11-21 19:41:02,476 | INFO     | cpuconsumptiontime: 311558 s
[2025-11-21 14:41:34] 2025-11-21 19:41:02,476 | INFO     | nevents: 1000
[2025-11-21 14:41:34] 2025-11-21 19:41:02,476 | INFO     | neventsw: 0
[2025-11-21 14:41:34] 2025-11-21 19:41:02,476 | INFO     | pid: 14528
[2025-11-21 14:41:34] 2025-11-21 19:41:02,476 | INFO     | pgrp: 14528
[2025-11-21 14:41:34] 2025-11-21 19:41:02,476 | INFO     | corecount: 8
[2025-11-21 14:41:34] 2025-11-21 19:41:02,477 | INFO     | event service: False
[2025-11-21 14:41:34] 2025-11-21 19:41:02,477 | INFO     | sizes: {0: 2298585, 1: 2298784, 6: 2299046, 11: 2299074, 40115: 2342636, 40118: 2351630, 40119: 2351814, 40127: 2352124}
[2025-11-21 14:41:34] 2025-11-21 19:41:02,477 | INFO     | --------------------------------------------------
[2025-11-21 14:41:34] 2025-11-21 19:41:02,477 | INFO     | 
[2025-11-21 14:41:34] 2025-11-21 19:41:02,477 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 14:41:34] 2025-11-21 19:41:02,506 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,507 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,507 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,507 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,507 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,510 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,510 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,510 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,510 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 14:41:34] 2025-11-21 19:41:02,510 | INFO     | job 6893882066 has completed (purged errors)
[2025-11-21 14:41:34] 2025-11-21 19:41:02,511 | INFO     | overall cleanup function is called
[2025-11-21 14:41:34] 2025-11-21 19:41:03,526 | INFO     | --- collectZombieJob: --- 10, [14528]
[2025-11-21 14:41:34] 2025-11-21 19:41:03,526 | INFO     | zombie collector waiting for pid 14528
[2025-11-21 14:41:34] 2025-11-21 19:41:03,526 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 14:41:34] 2025-11-21 19:41:03,527 | INFO     | collected zombie processes
[2025-11-21 14:41:34] 2025-11-21 19:41:03,527 | INFO     | will attempt to kill all subprocesses of pid=14528
[2025-11-21 14:41:34] 2025-11-21 19:41:03,610 | INFO     | process IDs to be killed: [14528] (in reverse order)
[2025-11-21 14:41:34] 2025-11-21 19:41:03,666 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 14:41:34] 2025-11-21 19:41:03,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 14:41:34] 2025-11-21 19:41:03,671 | INFO     | did not find any defunct processes belonging to 14528
[2025-11-21 14:41:34] 2025-11-21 19:41:03,674 | INFO     | did not find any defunct processes belonging to 14528
[2025-11-21 14:41:34] 2025-11-21 19:41:03,677 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 14:41:34] 2025-11-21 19:41:03,677 | INFO     | ready for new job
[2025-11-21 14:41:34] 2025-11-21 19:41:03,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 14:41:34] 2025-11-21 19:41:03,681 | INFO     | ***************************************
[2025-11-21 14:41:34] 2025-11-21 19:41:03,681 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 14:41:34] 2025-11-21 19:41:03,681 | INFO     | ***************************************
[2025-11-21 14:41:34] 2025-11-21 19:41:03,682 | INFO     | 
[2025-11-21 14:41:34] 2025-11-21 19:41:03,682 | INFO     | architecture information:
[2025-11-21 14:41:34] 2025-11-21 19:41:03,683 | INFO     | executing command: cat /etc/os-release
[2025-11-21 14:41:34] 2025-11-21 19:41:03,701 | INFO     | cat /etc/os-release:
[2025-11-21 14:41:34] NAME="CentOS Linux"
[2025-11-21 14:41:34] VERSION="7 (Core)"
[2025-11-21 14:41:34] ID="centos"
[2025-11-21 14:41:34] ID_LIKE="rhel fedora"
[2025-11-21 14:41:34] VERSION_ID="7"
[2025-11-21 14:41:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 14:41:34] ANSI_COLOR="0;31"
[2025-11-21 14:41:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 14:41:34] HOME_URL="https://www.centos.org/"
[2025-11-21 14:41:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 14:41:34] 
[2025-11-21 14:41:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 14:41:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 14:41:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 14:41:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 14:41:34] 
[2025-11-21 14:41:34] 2025-11-21 19:41:03,701 | INFO     | ***************************************
[2025-11-21 14:41:34] 2025-11-21 19:41:04,203 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 14:41:34] 2025-11-21 19:41:04,223 | INFO     | sufficient remaining disk space (17467179008 B)
[2025-11-21 14:41:34] 2025-11-21 19:41:04,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 14:41:34] 2025-11-21 19:41:04,223 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 14:41:34] 2025-11-21 19:41:04,224 | INFO     | update_server=False
[2025-11-21 14:41:34] 2025-11-21 19:41:04,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 14:41:34] 2025-11-21 19:41:04,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 14:41:34] 2025-11-21 19:41:04,683 | INFO     | all payload control threads have been joined
[2025-11-21 14:41:34] 2025-11-21 19:41:04,791 | INFO     | [monitor] cgroup control has ended
[2025-11-21 14:41:34] 2025-11-21 19:41:04,848 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 14:41:34] 2025-11-21 19:41:04,990 | INFO     | all data control threads have been joined
[2025-11-21 14:41:34] 2025-11-21 19:41:04,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 14:41:34] 2025-11-21 19:41:05,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 14:41:34] 2025-11-21 19:41:05,118 | INFO     | aborting loop
[2025-11-21 14:41:34] 2025-11-21 19:41:05,230 | INFO     | [job] retrieve thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:05,230 | INFO     | [job] queue monitor thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:05,330 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:05,433 | INFO     | [job] validate thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:05,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:05,684 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:05,684 | INFO     | all job control threads have been joined
[2025-11-21 14:41:34] 2025-11-21 19:41:05,685 | INFO     | [data] copytool_in thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:05,689 | INFO     | [payload] control thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:05,995 | INFO     | [data] control thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:06,055 | INFO     | [payload] validate_post thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:06,124 | INFO     | [job] job monitor thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:06,561 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:06,665 | INFO     | [payload] failed_post thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:06,690 | INFO     | [job] control thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:06,852 | INFO     | [data] copytool_out thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:09,004 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 14:41:34] 2025-11-21 19:41:09,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140508601378624)>', '<ExcThread(monitor, started 140508001183488)>']
[2025-11-21 14:41:34] 2025-11-21 19:41:14,210 | INFO     | all workflow threads have been joined
[2025-11-21 14:41:34] 2025-11-21 19:41:14,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 14:41:34] 2025-11-21 19:41:14,211 | INFO     | traces error code: 0
[2025-11-21 14:41:34] 2025-11-21 19:41:14,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 14:41:34] 2025-11-21 19:41:34,210 | INFO     | PID=7998 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 14:41:34] 2025-11-21 19:41:34,211 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 14:41:34] 2025-11-21 19:41:34,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 14:41:34] 2025-11-21 19:41:34,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 14:41:34] 2025-11-21 19:41:34,212 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 14:41:34] 2025-11-21 19:41:34,212 | INFO     | [monitor] control thread has ended
[2025-11-21 14:41:34] 2025-11-21 19:41:34,320 [wrapper] ==== pilot stdout END ====
[2025-11-21 14:41:34] 2025-11-21 19:41:34,324 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 14:41:34] 2025-11-21 19:41:34,329 [wrapper] pilotpid: 7998
[2025-11-21 14:41:34] 2025-11-21 19:41:34,333 [wrapper] Pilot exit status: 0
[2025-11-21 14:41:34] 2025-11-21 19:41:34,349 [wrapper] pandaids: 6893882066
[2025-11-21 14:41:34] 2025-11-21 19:41:34,390 [wrapper] cleanup supervisor_pilot 18683 7999
[2025-11-21 14:41:34] 2025-11-21 19:41:34,395 [wrapper] Test setup, not cleaning
[2025-11-21 14:41:34] 2025-11-21 19:41:34,400 [wrapper] apfmon messages muted
[2025-11-21 14:41:34] 2025-11-21 19:41:34,405 [wrapper] ==== wrapper stdout END ====
[2025-11-21 14:41:34] 2025-11-21 19:41:34,409 [wrapper] ==== wrapper stderr END ====
[2025-11-21 14:41:34]  *** Error codes and diagnostics ***
[2025-11-21 14:41:34]     "exeErrorCode": 0,
[2025-11-21 14:41:34]     "exeErrorDiag": "",
[2025-11-21 14:41:34]     "pilotErrorCode": 0,
[2025-11-21 14:41:34]     "pilotErrorDiag": "",
[2025-11-21 14:41:34]  *** Listing of results directory ***
[2025-11-21 14:41:34] total 1313736
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 15:39 queuedata.json
[2025-11-21 14:41:34] -rwx------ 1 boincer umatlas     36292 Nov 20 15:39 runpilot2-wrapper.sh
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas       100 Nov 21 03:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 14:41:34] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 03:31 run_atlas
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas       105 Nov 21 03:31 job.xml
[2025-11-21 14:41:34] -rw-r--r-- 2 boincer umatlas 410993626 Nov 21 03:31 EVNT.47493127._000892.pool.root.1
[2025-11-21 14:41:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 03:31 start_atlas.sh
[2025-11-21 14:41:34] drwxrwx--x 2 boincer umatlas      4096 Nov 21 03:31 shared
[2025-11-21 14:41:34] -rw-r--r-- 2 boincer umatlas    590101 Nov 21 03:31 input.tar.gz
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas         0 Nov 21 03:31 boinc_lockfile
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas      2785 Nov 21 03:31 pandaJob.out
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas        57 Nov 21 03:31 setup.sh.local
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas    989817 Nov 21 03:31 agis_schedconf.cvmfs.json
[2025-11-21 14:41:34] drwx------ 5 boincer umatlas      4096 Nov 21 03:31 pilot3
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas       533 Nov 21 14:31 boinc_task_state.xml
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas      5912 Nov 21 14:38 init_data.xml
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas 915479897 Nov 21 14:40 HITS.47523449._008914.pool.root.1
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas      1061 Nov 21 14:40 memory_monitor_summary.json
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas   1526164 Nov 21 14:40 agis_ddmendpoints.agis.ALL.json
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas   1909460 Nov 21 14:40 log.47523449._008914.job.log.tgz.1
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas      8658 Nov 21 14:41 heartbeat.json
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas        29 Nov 21 14:41 wrapper_checkpoint.txt
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 14:41 boinc_mmap_file
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas        95 Nov 21 14:41 pilot_heartbeat.json
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas       744 Nov 21 14:41 pilotlog.txt
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas   5529239 Nov 21 14:41 log.47523449._008914.job.log.1
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas       353 Nov 21 14:41 output.list
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas       620 Nov 21 14:41 runtime_log
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas   7454720 Nov 21 14:41 result.tar.gz
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas      9343 Nov 21 14:41 runtime_log.err
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas       667 Nov 21 14:41 K8sLDmncQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7WIKDmCkwZsm.diag
[2025-11-21 14:41:34] -rw-r--r-- 1 boincer umatlas     21407 Nov 21 14:41 stderr.txt
[2025-11-21 14:41:34] HITS file was successfully produced:
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas 915479897 Nov 21 14:40 shared/HITS.pool.root.1
[2025-11-21 14:41:34]  *** Contents of shared directory: ***
[2025-11-21 14:41:34] total 1303268
[2025-11-21 14:41:34] -rw-r--r-- 2 boincer umatlas 410993626 Nov 21 03:31 ATLAS.root_0
[2025-11-21 14:41:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 03:31 start_atlas.sh
[2025-11-21 14:41:34] -rw-r--r-- 2 boincer umatlas    590101 Nov 21 03:31 input.tar.gz
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas 915479897 Nov 21 14:40 HITS.pool.root.1
[2025-11-21 14:41:34] -rw------- 1 boincer umatlas   7454720 Nov 21 14:41 result.tar.gz
14:41:36 (4313): run_atlas exited; CPU time 309769.990248
14:41:36 (4313): called boinc_finish(0)

</stderr_txt>
]]>

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