Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:46:16 (30631): wrapper (7.7.26015): starting
03:46:16 (30631): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 03:46:16] Arguments: --nthreads 8
[2025-11-21 03:46:16] Threads: 8
[2025-11-21 03:46:16] Checking for CVMFS
[2025-11-21 03:46:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:46:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:46:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:46:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:46:17] 2.11.2.0 2873 52977 86512 153114 2 81 18461816 20275200 1 130560 0 12722920 99.849 2830083 29050 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 03:46:17] CVMFS is ok
[2025-11-21 03:46:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 03:46:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 03:46:17] Further information can be found at the LHC@home message board.
[2025-11-21 03:46:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:46:17] Checking for apptainer binary...
[2025-11-21 03:46:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:46:17] Running /usr/bin/apptainer --version
[2025-11-21 03:46:17] apptainer version 1.3.2-1.el7
[2025-11-21 03:46:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:46:18] c-115-13.aglt2.org
[2025-11-21 03:46:18] apptainer works
[2025-11-21 03:46:18] Set ATHENA_PROC_NUMBER=8
[2025-11-21 03:46:18] Set ATHENA_CORE_NUMBER=8
[2025-11-21 03:46:18] Starting ATLAS job with PandaID=6893881888
[2025-11-21 03:46:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:30:37 (31236): wrapper (7.7.26015): starting
13:30:37 (31236): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 13:30:37] Arguments: --nthreads 8
[2025-11-21 13:30:37] Threads: 8
[2025-11-21 13:30:37] This job has been restarted, cleaning up previous attempt
[2025-11-21 13:30:37] Checking for CVMFS
[2025-11-21 13:30:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 13:30:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 13:30:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 13:30:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 13:30:37] 2.11.2.0 2873 53562 92528 153139 2 49 19187376 20275200 1 130560 0 12917455 99.851 2856383 29129 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 13:30:37] CVMFS is ok
[2025-11-21 13:30:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 13:30:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 13:30:37] Further information can be found at the LHC@home message board.
[2025-11-21 13:30:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 13:30:37] Checking for apptainer binary...
[2025-11-21 13:30:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 13:30:37] Running /usr/bin/apptainer --version
[2025-11-21 13:30:37] apptainer version 1.3.2-1.el7
[2025-11-21 13:30:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 13:30:39] c-115-13.aglt2.org
[2025-11-21 13:30:39] apptainer works
[2025-11-21 13:30:39] Set ATHENA_PROC_NUMBER=8
[2025-11-21 13:30:39] Set ATHENA_CORE_NUMBER=8
[2025-11-21 13:30:39] Starting ATLAS job with PandaID=6893881888
[2025-11-21 13:30:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:52:09]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:52:09] 2025-11-22 05:51:24,418 | INFO     | monitor loop #3007: job 0:6893881888 is in state 'finished'
[2025-11-22 00:52:09] 2025-11-22 05:51:24,418 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,125 | INFO     | PID=2577 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 00:52:09] 2025-11-22 05:51:25,331 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 00:52:09] 2025-11-22 05:51:25,334 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1779.0
[2025-11-22 00:52:09] 2025-11-22 05:51:25,335 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893881888/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,335 | INFO     | extracted standard info from prmon json
[2025-11-22 00:52:09] 2025-11-22 05:51:25,336 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:52:09] 2025-11-22 05:51:25,336 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:52:09] 2025-11-22 05:51:25,346 | INFO     | fitting pss+swap vs Time
[2025-11-22 00:52:09] 2025-11-22 05:51:25,347 | INFO     | sum of square deviations: 92844535806.50215
[2025-11-22 00:52:09] 2025-11-22 05:51:25,355 | INFO     | sum of deviations: 623816978665.879
[2025-11-22 00:52:09] 2025-11-22 05:51:25,355 | INFO     | mean x: 1763770262.6143498
[2025-11-22 00:52:09] 2025-11-22 05:51:25,356 | INFO     | mean y: 3208903.158445441
[2025-11-22 00:52:09] 2025-11-22 05:51:25,356 | INFO     | intersect: -11847459816.623693
[2025-11-22 00:52:09] 2025-11-22 05:51:25,356 | INFO     | chi2: 6.159912381788336
[2025-11-22 00:52:09] 2025-11-22 05:51:25,357 | INFO     | sum of square deviations: 90778464279.60081
[2025-11-22 00:52:09] 2025-11-22 05:51:25,365 | INFO     | sum of deviations: 862173054447.6996
[2025-11-22 00:52:09] 2025-11-22 05:51:25,365 | INFO     | mean x: 1763770110.1189759
[2025-11-22 00:52:09] 2025-11-22 05:51:25,366 | INFO     | mean y: 3226490.2063253014
[2025-11-22 00:52:09] 2025-11-22 05:51:25,366 | INFO     | intersect: -16748269310.616005
[2025-11-22 00:52:09] 2025-11-22 05:51:25,366 | INFO     | chi2: 3.2388859362549165
[2025-11-22 00:52:09] 2025-11-22 05:51:25,366 | INFO     | current chi2=3.2388859362549165 (change=47.41993496805862 %)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,367 | INFO     | sum of square deviations: 88743277052.6709
[2025-11-22 00:52:09] 2025-11-22 05:51:25,375 | INFO     | sum of deviations: 965194656193.1681
[2025-11-22 00:52:09] 2025-11-22 05:51:25,375 | INFO     | mean x: 1763769957.6236722
[2025-11-22 00:52:09] 2025-11-22 05:51:25,375 | INFO     | mean y: 3234197.335356601
[2025-11-22 00:52:09] 2025-11-22 05:51:25,376 | INFO     | intersect: -19179980513.58885
[2025-11-22 00:52:09] 2025-11-22 05:51:25,376 | INFO     | chi2: 2.5430693592171973
[2025-11-22 00:52:09] 2025-11-22 05:51:25,376 | INFO     | current chi2=2.5430693592171973 (change=21.48320721174526 %)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,376 | INFO     | right removable region: 658
[2025-11-22 00:52:09] 2025-11-22 05:51:25,377 | INFO     | sum of square deviations: 90778213569.60083
[2025-11-22 00:52:09] 2025-11-22 05:51:25,385 | INFO     | sum of deviations: 414658641141.4608
[2025-11-22 00:52:09] 2025-11-22 05:51:25,385 | INFO     | mean x: 1763770415.1189759
[2025-11-22 00:52:09] 2025-11-22 05:51:25,386 | INFO     | mean y: 3224310.6777108433
[2025-11-22 00:52:09] 2025-11-22 05:51:25,386 | INFO     | intersect: -8053363441.602736
[2025-11-22 00:52:09] 2025-11-22 05:51:25,386 | INFO     | chi2: 3.753295499153276
[2025-11-22 00:52:09] 2025-11-22 05:51:25,386 | INFO     | current chi2=3.753295499153276 (change=39.0690115942262 %)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,387 | INFO     | sum of square deviations: 88742857007.15912
[2025-11-22 00:52:09] 2025-11-22 05:51:25,395 | INFO     | sum of deviations: 378794861373.4675
[2025-11-22 00:52:09] 2025-11-22 05:51:25,396 | INFO     | mean x: 1763770567.6206374
[2025-11-22 00:52:09] 2025-11-22 05:51:25,396 | INFO     | mean y: 3226995.5538694994
[2025-11-22 00:52:09] 2025-11-22 05:51:25,396 | INFO     | intersect: -7525347699.788242
[2025-11-22 00:52:09] 2025-11-22 05:51:25,396 | INFO     | chi2: 3.7236151705318865
[2025-11-22 00:52:09] 2025-11-22 05:51:25,397 | INFO     | current chi2=3.7236151705318865 (change=0.7907804921857421 %)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,397 | INFO     | left removable region: 20
[2025-11-22 00:52:09] 2025-11-22 05:51:25,397 | INFO     | sum of square deviations: 80526814854.94057
[2025-11-22 00:52:09] 2025-11-22 05:51:25,405 | INFO     | sum of deviations: 675896708199.9906
[2025-11-22 00:52:09] 2025-11-22 05:51:25,405 | INFO     | mean x: 1763770537.1316614
[2025-11-22 00:52:09] 2025-11-22 05:51:25,405 | INFO     | mean y: 3255963.1786833857
[2025-11-22 00:52:09] 2025-11-22 05:51:25,406 | INFO     | intersect: -14800840066.384798
[2025-11-22 00:52:09] 2025-11-22 05:51:25,406 | INFO     | chi2: 0.07183715388970097
[2025-11-22 00:52:09] 2025-11-22 05:51:25,406 | INFO     | current memory leak: 8.39 B/s (using 638 data points, chi2=0.07)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,407 | INFO     | could have reported an average CPU frequency of 2373 MHz (26 samples)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,407 | INFO     | ..............................
[2025-11-22 00:52:09] 2025-11-22 05:51:25,407 | INFO     | . Timing measurements:
[2025-11-22 00:52:09] 2025-11-22 05:51:25,407 | INFO     | . get job = 0 s
[2025-11-22 00:52:09] 2025-11-22 05:51:25,407 | INFO     | . initial setup = 2 s
[2025-11-22 00:52:09] 2025-11-22 05:51:25,407 | INFO     | . payload setup = 8 s
[2025-11-22 00:52:09] 2025-11-22 05:51:25,407 | INFO     | . stage-in = 0 s
[2025-11-22 00:52:09] 2025-11-22 05:51:25,408 | INFO     | . payload execution = 40785 s
[2025-11-22 00:52:09] 2025-11-22 05:51:25,408 | INFO     | . stage-out = 3 s
[2025-11-22 00:52:09] 2025-11-22 05:51:25,408 | INFO     | . log creation = 0 s
[2025-11-22 00:52:09] 2025-11-22 05:51:25,408 | INFO     | ..............................
[2025-11-22 00:52:09] 2025-11-22 05:51:25,605 | INFO     | 
[2025-11-22 00:52:09] 2025-11-22 05:51:25,605 | INFO     | job summary report
[2025-11-22 00:52:09] 2025-11-22 05:51:25,605 | INFO     | --------------------------------------------------
[2025-11-22 00:52:09] 2025-11-22 05:51:25,605 | INFO     | PanDA job id: 6893881888
[2025-11-22 00:52:09] 2025-11-22 05:51:25,605 | INFO     | task id: 47523449
[2025-11-22 00:52:09] 2025-11-22 05:51:25,605 | INFO     | errors: (none)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | pilot state: finished 
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | transexitcode: 0
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | exeerrorcode: 0
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | exeerrordiag: 
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | exitcode: 0
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | exitmsg: OK
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | cpuconsumptiontime: 316551 s
[2025-11-22 00:52:09] 2025-11-22 05:51:25,606 | INFO     | nevents: 1000
[2025-11-22 00:52:09] 2025-11-22 05:51:25,607 | INFO     | neventsw: 0
[2025-11-22 00:52:09] 2025-11-22 05:51:25,607 | INFO     | pid: 9203
[2025-11-22 00:52:09] 2025-11-22 05:51:25,607 | INFO     | pgrp: 9203
[2025-11-22 00:52:09] 2025-11-22 05:51:25,607 | INFO     | corecount: 8
[2025-11-22 00:52:09] 2025-11-22 05:51:25,607 | INFO     | event service: False
[2025-11-22 00:52:09] 2025-11-22 05:51:25,607 | INFO     | sizes: {0: 2298756, 6: 2299018, 11: 2299046, 40797: 2342947, 40801: 2351941, 40803: 2351997, 40812: 2352371}
[2025-11-22 00:52:09] 2025-11-22 05:51:25,607 | INFO     | --------------------------------------------------
[2025-11-22 00:52:09] 2025-11-22 05:51:25,607 | INFO     | 
[2025-11-22 00:52:09] 2025-11-22 05:51:25,608 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 00:52:09] 2025-11-22 05:51:25,635 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,636 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,636 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,636 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,636 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,636 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,637 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,637 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,637 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,637 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,637 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,638 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,638 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,639 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,639 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,639 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 00:52:09] 2025-11-22 05:51:25,640 | INFO     | job 6893881888 has completed (purged errors)
[2025-11-22 00:52:09] 2025-11-22 05:51:25,640 | INFO     | overall cleanup function is called
[2025-11-22 00:52:09] 2025-11-22 05:51:26,656 | INFO     | --- collectZombieJob: --- 10, [9203]
[2025-11-22 00:52:09] 2025-11-22 05:51:26,656 | INFO     | zombie collector waiting for pid 9203
[2025-11-22 00:52:09] 2025-11-22 05:51:26,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 00:52:09] 2025-11-22 05:51:26,657 | INFO     | collected zombie processes
[2025-11-22 00:52:09] 2025-11-22 05:51:26,657 | INFO     | will attempt to kill all subprocesses of pid=9203
[2025-11-22 00:52:09] 2025-11-22 05:51:26,744 | INFO     | process IDs to be killed: [9203] (in reverse order)
[2025-11-22 00:52:09] 2025-11-22 05:51:26,804 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 00:52:09] 2025-11-22 05:51:26,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 00:52:09] 2025-11-22 05:51:26,811 | INFO     | did not find any defunct processes belonging to 9203
[2025-11-22 00:52:09] 2025-11-22 05:51:26,814 | INFO     | did not find any defunct processes belonging to 9203
[2025-11-22 00:52:09] 2025-11-22 05:51:26,817 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 00:52:09] 2025-11-22 05:51:26,817 | INFO     | ready for new job
[2025-11-22 00:52:09] 2025-11-22 05:51:26,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 00:52:09] 2025-11-22 05:51:26,820 | INFO     | ***************************************
[2025-11-22 00:52:09] 2025-11-22 05:51:26,820 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 00:52:09] 2025-11-22 05:51:26,820 | INFO     | ***************************************
[2025-11-22 00:52:09] 2025-11-22 05:51:26,820 | INFO     | 
[2025-11-22 00:52:09] 2025-11-22 05:51:26,821 | INFO     | architecture information:
[2025-11-22 00:52:09] 2025-11-22 05:51:26,821 | INFO     | executing command: cat /etc/os-release
[2025-11-22 00:52:09] 2025-11-22 05:51:26,839 | INFO     | cat /etc/os-release:
[2025-11-22 00:52:09] NAME="CentOS Linux"
[2025-11-22 00:52:09] VERSION="7 (Core)"
[2025-11-22 00:52:09] ID="centos"
[2025-11-22 00:52:09] ID_LIKE="rhel fedora"
[2025-11-22 00:52:09] VERSION_ID="7"
[2025-11-22 00:52:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 00:52:09] ANSI_COLOR="0;31"
[2025-11-22 00:52:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 00:52:09] HOME_URL="https://www.centos.org/"
[2025-11-22 00:52:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 00:52:09] 
[2025-11-22 00:52:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 00:52:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 00:52:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 00:52:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:52:09] 
[2025-11-22 00:52:09] 2025-11-22 05:51:26,839 | INFO     | ***************************************
[2025-11-22 00:52:09] 2025-11-22 05:51:27,342 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 00:52:09] 2025-11-22 05:51:27,362 | INFO     | sufficient remaining disk space (17052991488 B)
[2025-11-22 00:52:09] 2025-11-22 05:51:27,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:52:09] 2025-11-22 05:51:27,363 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:52:09] 2025-11-22 05:51:27,363 | INFO     | update_server=False
[2025-11-22 00:52:09] 2025-11-22 05:51:27,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:52:09] 2025-11-22 05:51:27,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:52:09] 2025-11-22 05:51:27,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:52:09] 2025-11-22 05:51:27,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:52:09] 2025-11-22 05:51:27,932 | INFO     | aborting loop
[2025-11-22 00:52:09] 2025-11-22 05:51:28,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:52:09] 2025-11-22 05:51:28,267 | INFO     | all data control threads have been joined
[2025-11-22 00:52:09] 2025-11-22 05:51:28,369 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:28,370 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:28,503 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:28,573 | INFO     | all job control threads have been joined
[2025-11-22 00:52:09] 2025-11-22 05:51:28,672 | INFO     | all payload control threads have been joined
[2025-11-22 00:52:09] 2025-11-22 05:51:28,762 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:28,938 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:29,273 | INFO     | [data] control thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:29,364 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:29,397 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:29,445 | INFO     | [job] validate thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:29,578 | INFO     | [job] control thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:29,678 | INFO     | [payload] control thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:29,710 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:29,842 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:30,229 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:31,800 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:38,210 | INFO     | job.realtimelogging is not enabled
[2025-11-22 00:52:09] 2025-11-22 05:51:39,215 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:52:09] 2025-11-22 05:51:57,331 | INFO     | PID=2577 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 00:52:09] 2025-11-22 05:51:57,331 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:52:09] 2025-11-22 05:51:57,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:52:09] 2025-11-22 05:51:57,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:52:09] 2025-11-22 05:52:03,589 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:52:09] 2025-11-22 05:52:04,042 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278319630144)>', '<ExcThread(monitor, started 140277431912192)>']
[2025-11-22 00:52:09] 2025-11-22 05:52:04,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:52:09] 2025-11-22 05:52:04,368 | INFO     | [monitor] control thread has ended
[2025-11-22 00:52:09] 2025-11-22 05:52:09,067 | INFO     | all workflow threads have been joined
[2025-11-22 00:52:09] 2025-11-22 05:52:09,068 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:52:09] 2025-11-22 05:52:09,069 | INFO     | traces error code: 0
[2025-11-22 00:52:09] 2025-11-22 05:52:09,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:52:09] 2025-11-22 05:52:09,165 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:52:09] 2025-11-22 05:52:09,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:52:09] 2025-11-22 05:52:09,174 [wrapper] pilotpid: 2577
[2025-11-22 00:52:09] 2025-11-22 05:52:09,179 [wrapper] Pilot exit status: 0
[2025-11-22 00:52:09] 2025-11-22 05:52:09,196 [wrapper] pandaids: 6893881888 6893881888
[2025-11-22 00:52:09] 2025-11-22 05:52:09,243 [wrapper] cleanup supervisor_pilot 14788 2578
[2025-11-22 00:52:09] 2025-11-22 05:52:09,248 [wrapper] Test setup, not cleaning
[2025-11-22 00:52:09] 2025-11-22 05:52:09,253 [wrapper] apfmon messages muted
[2025-11-22 00:52:09] 2025-11-22 05:52:09,257 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:52:09] 2025-11-22 05:52:09,262 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:52:09]  *** Error codes and diagnostics ***
[2025-11-22 00:52:09]     "exeErrorCode": 0,
[2025-11-22 00:52:09]     "exeErrorDiag": "",
[2025-11-22 00:52:09]     "pilotErrorCode": 0,
[2025-11-22 00:52:09]     "pilotErrorDiag": "",
[2025-11-22 00:52:09]  *** Listing of results directory ***
[2025-11-22 00:52:09] total 1721360
[2025-11-22 00:52:09] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 15:25 queuedata.json
[2025-11-22 00:52:09] -rwx------ 1 boincer umatlas     36292 Nov 20 15:25 runpilot2-wrapper.sh
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas       100 Nov 21 03:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:52:09] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 03:46 run_atlas
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas       105 Nov 21 03:46 job.xml
[2025-11-22 00:52:09] -rw-r--r-- 3 boincer umatlas 410060180 Nov 21 03:46 EVNT.47493127._000878.pool.root.1
[2025-11-22 00:52:09] -rw-r--r-- 3 boincer umatlas 410060180 Nov 21 03:46 ATLAS.root_0
[2025-11-22 00:52:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 03:46 start_atlas.sh
[2025-11-22 00:52:09] drwxrwx--x 2 boincer umatlas      4096 Nov 21 03:46 shared
[2025-11-22 00:52:09] -rw-r--r-- 2 boincer umatlas    590104 Nov 21 03:46 input.tar.gz
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas         0 Nov 21 03:46 boinc_lockfile
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas      2785 Nov 21 13:30 pandaJob.out
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas        57 Nov 21 13:30 setup.sh.local
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas    989798 Nov 21 13:30 agis_schedconf.cvmfs.json
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas       533 Nov 22 00:40 boinc_task_state.xml
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas      5912 Nov 22 00:48 init_data.xml
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas 923508146 Nov 22 00:50 HITS.47523449._008773.pool.root.1
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas      1060 Nov 22 00:51 memory_monitor_summary.json
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas   1526164 Nov 22 00:51 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas   1932957 Nov 22 00:51 log.47523449._008773.job.log.tgz.1
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas        96 Nov 22 00:51 pilot_heartbeat.json
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas      8659 Nov 22 00:51 heartbeat.json
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 00:51 boinc_mmap_file
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas        29 Nov 22 00:51 wrapper_checkpoint.txt
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas      4817 Nov 22 00:52 pilotlog.txt
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas   5623439 Nov 22 00:52 log.47523449._008773.job.log.1
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas       353 Nov 22 00:52 output.list
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas       620 Nov 22 00:52 runtime_log
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas   7577600 Nov 22 00:52 result.tar.gz
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas      9428 Nov 22 00:52 runtime_log.err
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas       793 Nov 22 00:52 aU2LDmmOQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZVIKDmJPzdNm.diag
[2025-11-22 00:52:09] -rw-r--r-- 1 boincer umatlas     23513 Nov 22 00:52 stderr.txt
[2025-11-22 00:52:09] HITS file was successfully produced:
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas 923508146 Nov 22 00:50 shared/HITS.pool.root.1
[2025-11-22 00:52:09]  *** Contents of shared directory: ***
[2025-11-22 00:52:09] total 1310320
[2025-11-22 00:52:09] -rw-r--r-- 3 boincer umatlas 410060180 Nov 21 03:46 ATLAS.root_0
[2025-11-22 00:52:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 03:46 start_atlas.sh
[2025-11-22 00:52:09] -rw-r--r-- 2 boincer umatlas    590104 Nov 21 03:46 input.tar.gz
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas 923508146 Nov 22 00:50 HITS.pool.root.1
[2025-11-22 00:52:09] -rw------- 1 boincer umatlas   7577600 Nov 22 00:52 result.tar.gz
00:52:10 (31236): run_atlas exited; CPU time 314669.320533
00:52:10 (31236): called boinc_finish(0)

</stderr_txt>
]]>

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