Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:31:03 (17028): wrapper (7.7.26015): starting
03:31:03 (17028): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 03:31:03] Arguments: --nthreads 4
[2025-11-21 03:31:03] Threads: 4
[2025-11-21 03:31:03] Checking for CVMFS
[2025-11-21 03:31:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:31:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:31:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:31:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:31:03] 2.11.2.0 2311 100006 82160 153114 2 81 17501633 20275201 1 130560 0 38155255 99.937 4422237 40240 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 03:31:03] CVMFS is ok
[2025-11-21 03:31:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 03:31:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 03:31:03] Further information can be found at the LHC@home message board.
[2025-11-21 03:31:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:31:03] Checking for apptainer binary...
[2025-11-21 03:31:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:31:03] Running /usr/bin/apptainer --version
[2025-11-21 03:31:03] apptainer version 1.3.2-1.el7
[2025-11-21 03:31:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:31:03] c-205-34.aglt2.org
[2025-11-21 03:31:03] apptainer works
[2025-11-21 03:31:03] Set ATHENA_PROC_NUMBER=4
[2025-11-21 03:31:03] Set ATHENA_CORE_NUMBER=4
[2025-11-21 03:31:04] Starting ATLAS job with PandaID=6893881994
[2025-11-21 03:31:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:50:14]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:50:14] 2025-11-21 17:49:13,122 | INFO     | monitor loop #2495: job 0:6893881994 is in state 'finished'
[2025-11-21 12:50:14] 2025-11-21 17:49:13,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:50:14] 2025-11-21 17:49:13,497 | INFO     | time since job start (33481s) is within the limit (172800.0s)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,375 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 12:50:14] 2025-11-21 17:49:14,376 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3303.4052500000003
[2025-11-21 12:50:14] 2025-11-21 17:49:14,377 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893881994/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,377 | INFO     | extracted standard info from prmon json
[2025-11-21 12:50:14] 2025-11-21 17:49:14,377 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 12:50:14] 2025-11-21 17:49:14,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 12:50:14] 2025-11-21 17:49:14,381 | INFO     | fitting pss+swap vs Time
[2025-11-21 12:50:14] 2025-11-21 17:49:14,381 | INFO     | sum of square deviations: 51309055050.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,385 | INFO     | sum of deviations: 186078219332.0001
[2025-11-21 12:50:14] 2025-11-21 17:49:14,385 | INFO     | mean x: 1763730608.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,385 | INFO     | mean y: 2303841.316939891
[2025-11-21 12:50:14] 2025-11-21 17:49:14,385 | INFO     | intersect: -6394069091.261281
[2025-11-21 12:50:14] 2025-11-21 17:49:14,385 | INFO     | chi2: 2.28865399855783
[2025-11-21 12:50:14] 2025-11-21 17:49:14,386 | INFO     | sum of square deviations: 49919894120.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,389 | INFO     | sum of deviations: 257764299524.5001
[2025-11-21 12:50:14] 2025-11-21 17:49:14,389 | INFO     | mean x: 1763730455.5
[2025-11-21 12:50:14] 2025-11-21 17:49:14,389 | INFO     | mean y: 2311684.8841911764
[2025-11-21 12:50:14] 2025-11-21 17:49:14,389 | INFO     | intersect: -9104813909.55577
[2025-11-21 12:50:14] 2025-11-21 17:49:14,389 | INFO     | chi2: 1.227836104684147
[2025-11-21 12:50:14] 2025-11-21 17:49:14,389 | INFO     | current chi2=1.227836104684147 (change=46.35116948836065 %)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,390 | INFO     | sum of square deviations: 48556035990.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,393 | INFO     | sum of deviations: 253445268365.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,393 | INFO     | mean x: 1763730303.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,393 | INFO     | mean y: 2311201.9795918367
[2025-11-21 12:50:14] 2025-11-21 17:49:14,393 | INFO     | intersect: -9203734778.77918
[2025-11-21 12:50:14] 2025-11-21 17:49:14,393 | INFO     | chi2: 1.227422664335392
[2025-11-21 12:50:14] 2025-11-21 17:49:14,393 | INFO     | current chi2=1.227422664335392 (change=0.033672274921526836 %)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,393 | INFO     | right removable region: 538
[2025-11-21 12:50:14] 2025-11-21 17:49:14,393 | INFO     | sum of square deviations: 49919894120.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,397 | INFO     | sum of deviations: 124055033026.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,397 | INFO     | mean x: 1763730760.5
[2025-11-21 12:50:14] 2025-11-21 17:49:14,397 | INFO     | mean y: 2310615.018382353
[2025-11-21 12:50:14] 2025-11-21 17:49:14,397 | INFO     | intersect: -4380705046.369796
[2025-11-21 12:50:14] 2025-11-21 17:49:14,397 | INFO     | chi2: 1.11772166902066
[2025-11-21 12:50:14] 2025-11-21 17:49:14,397 | INFO     | current chi2=1.11772166902066 (change=51.16248809453155 %)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,397 | INFO     | sum of square deviations: 48556035990.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,400 | INFO     | sum of deviations: 119879528309.00003
[2025-11-21 12:50:14] 2025-11-21 17:49:14,400 | INFO     | mean x: 1763730913.0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,401 | INFO     | mean y: 2311081.211502783
[2025-11-21 12:50:14] 2025-11-21 17:49:14,401 | INFO     | intersect: -4352147136.052908
[2025-11-21 12:50:14] 2025-11-21 17:49:14,401 | INFO     | chi2: 1.1175866066064666
[2025-11-21 12:50:14] 2025-11-21 17:49:14,401 | INFO     | current chi2=1.1175866066064666 (change=0.012083725129146522 %)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,401 | INFO     | left removable region: 20
[2025-11-21 12:50:14] 2025-11-21 17:49:14,401 | INFO     | sum of square deviations: 43098889949.5
[2025-11-21 12:50:14] 2025-11-21 17:49:14,404 | INFO     | sum of deviations: 184219850000.99997
[2025-11-21 12:50:14] 2025-11-21 17:49:14,404 | INFO     | mean x: 1763730882.5
[2025-11-21 12:50:14] 2025-11-21 17:49:14,404 | INFO     | mean y: 2318908.868725869
[2025-11-21 12:50:14] 2025-11-21 17:49:14,404 | INFO     | intersect: -7536488679.841589
[2025-11-21 12:50:14] 2025-11-21 17:49:14,404 | INFO     | chi2: 0.04434543204524332
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | current memory leak: 4.27 B/s (using 518 data points, chi2=0.04)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | could have reported an average CPU frequency of 3214 MHz (22 samples)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | ..............................
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | . Timing measurements:
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | . get job = 0 s
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | . initial setup = 2 s
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | . payload setup = 3 s
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | . stage-in = 0 s
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | . payload execution = 33452 s
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | . stage-out = 2 s
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | . log creation = 0 s
[2025-11-21 12:50:14] 2025-11-21 17:49:14,405 | INFO     | ..............................
[2025-11-21 12:50:14] 2025-11-21 17:49:14,442 | INFO     | 
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | job summary report
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | --------------------------------------------------
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | PanDA job id: 6893881994
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | task id: 47523449
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | errors: (none)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | pilot state: finished 
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | transexitcode: 0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | exeerrorcode: 0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | exeerrordiag: 
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | exitcode: 0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | exitmsg: OK
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | cpuconsumptiontime: 131742 s
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | nevents: 1000
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | neventsw: 0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | pid: 27069
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | pgrp: 27069
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | corecount: 4
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | event service: False
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | sizes: {0: 2298807, 3: 2299069, 11: 2299097, 33459: 2340065, 33462: 2349059, 33463: 2349115, 33468: 2349489}
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | --------------------------------------------------
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | 
[2025-11-21 12:50:14] 2025-11-21 17:49:14,443 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 12:50:14] 2025-11-21 17:49:14,455 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,455 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,455 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,455 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | job 6893881994 has completed (purged errors)
[2025-11-21 12:50:14] 2025-11-21 17:49:14,456 | INFO     | overall cleanup function is called
[2025-11-21 12:50:14] 2025-11-21 17:49:15,465 | INFO     | --- collectZombieJob: --- 10, [27069]
[2025-11-21 12:50:14] 2025-11-21 17:49:15,465 | INFO     | zombie collector waiting for pid 27069
[2025-11-21 12:50:14] 2025-11-21 17:49:15,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 12:50:14] 2025-11-21 17:49:15,465 | INFO     | collected zombie processes
[2025-11-21 12:50:14] 2025-11-21 17:49:15,465 | INFO     | will attempt to kill all subprocesses of pid=27069
[2025-11-21 12:50:14] 2025-11-21 17:49:15,495 | INFO     | process IDs to be killed: [27069] (in reverse order)
[2025-11-21 12:50:14] 2025-11-21 17:49:15,517 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 12:50:14] 2025-11-21 17:49:15,517 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 12:50:14] 2025-11-21 17:49:15,518 | INFO     | did not find any defunct processes belonging to 27069
[2025-11-21 12:50:14] 2025-11-21 17:49:15,519 | INFO     | did not find any defunct processes belonging to 27069
[2025-11-21 12:50:14] 2025-11-21 17:49:15,520 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 12:50:14] 2025-11-21 17:49:15,520 | INFO     | ready for new job
[2025-11-21 12:50:14] 2025-11-21 17:49:15,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 12:50:14] 2025-11-21 17:49:15,522 | INFO     | ***************************************
[2025-11-21 12:50:14] 2025-11-21 17:49:15,522 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 12:50:14] 2025-11-21 17:49:15,522 | INFO     | ***************************************
[2025-11-21 12:50:14] 2025-11-21 17:49:15,522 | INFO     | 
[2025-11-21 12:50:14] 2025-11-21 17:49:15,522 | INFO     | architecture information:
[2025-11-21 12:50:14] 2025-11-21 17:49:15,523 | INFO     | executing command: cat /etc/os-release
[2025-11-21 12:50:14] 2025-11-21 17:49:15,531 | INFO     | cat /etc/os-release:
[2025-11-21 12:50:14] NAME="CentOS Linux"
[2025-11-21 12:50:14] VERSION="7 (Core)"
[2025-11-21 12:50:14] ID="centos"
[2025-11-21 12:50:14] ID_LIKE="rhel fedora"
[2025-11-21 12:50:14] VERSION_ID="7"
[2025-11-21 12:50:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 12:50:14] ANSI_COLOR="0;31"
[2025-11-21 12:50:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 12:50:14] HOME_URL="https://www.centos.org/"
[2025-11-21 12:50:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 12:50:14] 
[2025-11-21 12:50:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 12:50:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 12:50:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 12:50:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 12:50:14] 
[2025-11-21 12:50:14] 2025-11-21 17:49:15,532 | INFO     | ***************************************
[2025-11-21 12:50:14] 2025-11-21 17:49:16,035 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 12:50:14] 2025-11-21 17:49:16,051 | INFO     | sufficient remaining disk space (28236054528 B)
[2025-11-21 12:50:14] 2025-11-21 17:49:16,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:50:14] 2025-11-21 17:49:16,051 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:50:14] 2025-11-21 17:49:16,052 | INFO     | update_server=False
[2025-11-21 12:50:14] 2025-11-21 17:49:16,052 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:50:14] 2025-11-21 17:49:16,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:50:14] 2025-11-21 17:49:16,052 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:50:14] 2025-11-21 17:49:16,125 | INFO     | all data control threads have been joined
[2025-11-21 12:50:14] 2025-11-21 17:49:16,577 | INFO     | all job control threads have been joined
[2025-11-21 12:50:14] 2025-11-21 17:49:16,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:50:14] 2025-11-21 17:49:16,628 | INFO     | aborting loop
[2025-11-21 12:50:14] 2025-11-21 17:49:16,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:50:14] 2025-11-21 17:49:16,979 | INFO     | all payload control threads have been joined
[2025-11-21 12:50:14] 2025-11-21 17:49:17,053 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,055 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,130 | INFO     | [data] control thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,582 | INFO     | [job] control thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,607 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,634 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,698 | INFO     | [job] validate thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,764 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,772 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,787 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,805 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:17,981 | INFO     | [payload] control thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:18,364 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:18,759 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:20,055 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:26,345 | INFO     | job.realtimelogging is not enabled
[2025-11-21 12:50:14] 2025-11-21 17:49:27,346 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:50:14] 2025-11-21 17:49:46,600 | INFO     | PID=20684 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 12:50:14] 2025-11-21 17:49:46,600 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:50:14] 2025-11-21 17:49:46,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:50:14] 2025-11-21 17:49:46,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:50:14] 2025-11-21 17:50:08,332 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:50:14] 2025-11-21 17:50:09,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140468040996672)>', '<ExcThread(monitor, started 140467148670720)>']
[2025-11-21 12:50:14] 2025-11-21 17:50:09,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:50:14] 2025-11-21 17:50:09,701 | INFO     | [monitor] control thread has ended
[2025-11-21 12:50:14] 2025-11-21 17:50:14,157 | INFO     | all workflow threads have been joined
[2025-11-21 12:50:14] 2025-11-21 17:50:14,168 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:50:14] 2025-11-21 17:50:14,169 | INFO     | traces error code: 0
[2025-11-21 12:50:14] 2025-11-21 17:50:14,169 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:50:14] 2025-11-21 17:50:14,229 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:50:14] 2025-11-21 17:50:14,231 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:50:14] 2025-11-21 17:50:14,233 [wrapper] pilotpid: 20684
[2025-11-21 12:50:14] 2025-11-21 17:50:14,235 [wrapper] Pilot exit status: 0
[2025-11-21 12:50:14] 2025-11-21 17:50:14,241 [wrapper] pandaids: 6893881994
[2025-11-21 12:50:14] 2025-11-21 17:50:14,256 [wrapper] cleanup supervisor_pilot 15158 20685
[2025-11-21 12:50:14] 2025-11-21 17:50:14,258 [wrapper] Test setup, not cleaning
[2025-11-21 12:50:14] 2025-11-21 17:50:14,260 [wrapper] apfmon messages muted
[2025-11-21 12:50:14] 2025-11-21 17:50:14,262 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:50:14] 2025-11-21 17:50:14,264 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:50:14]  *** Error codes and diagnostics ***
[2025-11-21 12:50:14]     "exeErrorCode": 0,
[2025-11-21 12:50:14]     "exeErrorDiag": "",
[2025-11-21 12:50:14]     "pilotErrorCode": 0,
[2025-11-21 12:50:14]     "pilotErrorDiag": "",
[2025-11-21 12:50:14]  *** Listing of results directory ***
[2025-11-21 12:50:14] total 1326260
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 15:33 queuedata.json
[2025-11-21 12:50:14] -rwx------ 1 boincer umatlas     36292 Nov 20 15:33 runpilot2-wrapper.sh
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas       100 Nov 21 03:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:50:14] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 03:31 run_atlas
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas       105 Nov 21 03:31 job.xml
[2025-11-21 12:50:14] -rw-r--r-- 2 boincer umatlas 410563597 Nov 21 03:31 EVNT.47493127._000887.pool.root.1
[2025-11-21 12:50:14] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 03:31 start_atlas.sh
[2025-11-21 12:50:14] drwxrwx--x 2 boincer umatlas      4096 Nov 21 03:31 shared
[2025-11-21 12:50:14] -rw-r--r-- 2 boincer umatlas    590097 Nov 21 03:31 input.tar.gz
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas         0 Nov 21 03:31 boinc_lockfile
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas      2786 Nov 21 03:31 pandaJob.out
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas        57 Nov 21 03:31 setup.sh.local
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas    989817 Nov 21 03:31 agis_schedconf.cvmfs.json
[2025-11-21 12:50:14] drwx------ 5 boincer umatlas      4096 Nov 21 03:31 pilot3
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas       533 Nov 21 12:44 boinc_task_state.xml
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas      6240 Nov 21 12:48 init_data.xml
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas 931580616 Nov 21 12:48 HITS.47523449._008862.pool.root.1
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas      1053 Nov 21 12:49 memory_monitor_summary.json
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas   1526164 Nov 21 12:49 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas   1363414 Nov 21 12:49 log.47523449._008862.job.log.tgz.1
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas      8642 Nov 21 12:49 heartbeat.json
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 12:49 boinc_mmap_file
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas        29 Nov 21 12:49 wrapper_checkpoint.txt
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas        95 Nov 21 12:49 pilot_heartbeat.json
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas      4818 Nov 21 12:50 pilotlog.txt
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas   4645639 Nov 21 12:50 log.47523449._008862.job.log.1
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas       353 Nov 21 12:50 output.list
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas       620 Nov 21 12:50 runtime_log
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas   6031360 Nov 21 12:50 result.tar.gz
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas      9343 Nov 21 12:50 runtime_log.err
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas       665 Nov 21 12:50 reaKDmhWQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGWIKDmvvzW1n.diag
[2025-11-21 12:50:14] -rw-r--r-- 1 boincer umatlas     21212 Nov 21 12:50 stderr.txt
[2025-11-21 12:50:14] HITS file was successfully produced:
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas 931580616 Nov 21 12:48 shared/HITS.pool.root.1
[2025-11-21 12:50:14]  *** Contents of shared directory: ***
[2025-11-21 12:50:14] total 1317184
[2025-11-21 12:50:14] -rw-r--r-- 2 boincer umatlas 410563597 Nov 21 03:31 ATLAS.root_0
[2025-11-21 12:50:14] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 03:31 start_atlas.sh
[2025-11-21 12:50:14] -rw-r--r-- 2 boincer umatlas    590097 Nov 21 03:31 input.tar.gz
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas 931580616 Nov 21 12:48 HITS.pool.root.1
[2025-11-21 12:50:14] -rw------- 1 boincer umatlas   6031360 Nov 21 12:50 result.tar.gz
12:50:15 (17028): run_atlas exited; CPU time 131693.762173
12:50:15 (17028): called boinc_finish(0)

</stderr_txt>
]]>

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