Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:25:26 (18573): wrapper (7.7.26015): starting
03:25:26 (18573): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 03:25:26] Arguments: --nthreads 8
[2025-11-21 03:25:26] Threads: 8
[2025-11-21 03:25:26] Checking for CVMFS
[2025-11-21 03:25:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 03:25:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 03:25:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 03:25:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 03:25:27] 2.11.2.0 26213 58164 86836 153114 1 81 18945828 20275201 1 130560 0 13763867 99.820 3416299 29846 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 03:25:27] CVMFS is ok
[2025-11-21 03:25:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 03:25:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 03:25:27] Further information can be found at the LHC@home message board.
[2025-11-21 03:25:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:25:27] Checking for apptainer binary...
[2025-11-21 03:25:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 03:25:27] Running /usr/bin/apptainer --version
[2025-11-21 03:25:27] apptainer version 1.3.2-1.el7
[2025-11-21 03:25:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:25:28] c-115-4.aglt2.org
[2025-11-21 03:25:28] apptainer works
[2025-11-21 03:25:29] Set ATHENA_PROC_NUMBER=8
[2025-11-21 03:25:29] Set ATHENA_CORE_NUMBER=8
[2025-11-21 03:25:29] Starting ATLAS job with PandaID=6893881961
[2025-11-21 03:25:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 14:44:59]  *** The last 200 lines of the pilot log: ***
[2025-11-21 14:44:59] 2025-11-21 19:43:51,083 | INFO     | monitor loop #2968: job 0:6893881961 is in state 'finished'
[2025-11-21 14:44:59] 2025-11-21 19:43:51,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 14:44:59] 2025-11-21 19:43:51,129 | INFO     | time since job start (40685s) is within the limit (172800.0s)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,242 | INFO     | PID=22329 has CPU usage=12.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 14:44:59] 2025-11-21 19:43:52,758 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 14:44:59] 2025-11-21 19:43:52,764 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-21 14:44:59] 2025-11-21 19:43:52,766 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893881961/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,767 | INFO     | extracted standard info from prmon json
[2025-11-21 14:44:59] 2025-11-21 19:43:52,767 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 14:44:59] 2025-11-21 19:43:52,767 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 14:44:59] 2025-11-21 19:43:52,779 | INFO     | fitting pss+swap vs Time
[2025-11-21 14:44:59] 2025-11-21 19:43:52,779 | INFO     | sum of square deviations: 92014227588.6897
[2025-11-21 14:44:59] 2025-11-21 19:43:52,788 | INFO     | sum of deviations: 638842475382.3778
[2025-11-21 14:44:59] 2025-11-21 19:43:52,788 | INFO     | mean x: 1763733890.6551723
[2025-11-21 14:44:59] 2025-11-21 19:43:52,788 | INFO     | mean y: 3126030.9625187404
[2025-11-21 14:44:59] 2025-11-21 19:43:52,788 | INFO     | intersect: -12242242475.075357
[2025-11-21 14:44:59] 2025-11-21 19:43:52,789 | INFO     | chi2: 5.883969997578825
[2025-11-21 14:44:59] 2025-11-21 19:43:52,790 | INFO     | sum of square deviations: 89960545619.02762
[2025-11-21 14:44:59] 2025-11-21 19:43:52,798 | INFO     | sum of deviations: 870150555995.2621
[2025-11-21 14:44:59] 2025-11-21 19:43:52,798 | INFO     | mean x: 1763733738.160121
[2025-11-21 14:44:59] 2025-11-21 19:43:52,798 | INFO     | mean y: 3143193.2145015104
[2025-11-21 14:44:59] 2025-11-21 19:43:52,798 | INFO     | intersect: -17056712128.105635
[2025-11-21 14:44:59] 2025-11-21 19:43:52,799 | INFO     | chi2: 2.8811285991877447
[2025-11-21 14:44:59] 2025-11-21 19:43:52,799 | INFO     | current chi2=2.8811285991877447 (change=51.03427447160181 %)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,800 | INFO     | sum of square deviations: 87937654924.33176
[2025-11-21 14:44:59] 2025-11-21 19:43:52,808 | INFO     | sum of deviations: 967211704339.356
[2025-11-21 14:44:59] 2025-11-21 19:43:52,808 | INFO     | mean x: 1763733585.6651447
[2025-11-21 14:44:59] 2025-11-21 19:43:52,808 | INFO     | mean y: 3150505.3561643837
[2025-11-21 14:44:59] 2025-11-21 19:43:52,808 | INFO     | intersect: -19395863135.155827
[2025-11-21 14:44:59] 2025-11-21 19:43:52,809 | INFO     | chi2: 2.2660580885027524
[2025-11-21 14:44:59] 2025-11-21 19:43:52,809 | INFO     | current chi2=2.2660580885027524 (change=21.34824911523889 %)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,809 | INFO     | right removable region: 656
[2025-11-21 14:44:59] 2025-11-21 19:43:52,810 | INFO     | sum of square deviations: 89960279049.02763
[2025-11-21 14:44:59] 2025-11-21 19:43:52,818 | INFO     | sum of deviations: 448457340208.33984
[2025-11-21 14:44:59] 2025-11-21 19:43:52,818 | INFO     | mean x: 1763734043.160121
[2025-11-21 14:44:59] 2025-11-21 19:43:52,818 | INFO     | mean y: 3140140.7703927495
[2025-11-21 14:44:59] 2025-11-21 19:43:52,819 | INFO     | intersect: -8789178938.180246
[2025-11-21 14:44:59] 2025-11-21 19:43:52,819 | INFO     | chi2: 3.818752898410895
[2025-11-21 14:44:59] 2025-11-21 19:43:52,819 | INFO     | current chi2=3.818752898410895 (change=35.09904197366301 %)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,820 | INFO     | sum of square deviations: 87937242931.30902
[2025-11-21 14:44:59] 2025-11-21 19:43:52,828 | INFO     | sum of deviations: 408238409133.1865
[2025-11-21 14:44:59] 2025-11-21 19:43:52,828 | INFO     | mean x: 1763734195.6605785
[2025-11-21 14:44:59] 2025-11-21 19:43:52,828 | INFO     | mean y: 3143170.296803653
[2025-11-21 14:44:59] 2025-11-21 19:43:52,829 | INFO     | intersect: -8184787428.490696
[2025-11-21 14:44:59] 2025-11-21 19:43:52,829 | INFO     | chi2: 3.777251110062015
[2025-11-21 14:44:59] 2025-11-21 19:43:52,829 | INFO     | current chi2=3.777251110062015 (change=1.0867890500626516 %)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,830 | INFO     | left removable region: 20
[2025-11-21 14:44:59] 2025-11-21 19:43:52,830 | INFO     | sum of square deviations: 79771717348.27628
[2025-11-21 14:44:59] 2025-11-21 19:43:52,838 | INFO     | sum of deviations: 698209712536.5663
[2025-11-21 14:44:59] 2025-11-21 19:43:52,838 | INFO     | mean x: 1763734165.1761007
[2025-11-21 14:44:59] 2025-11-21 19:43:52,838 | INFO     | mean y: 3172824.9056603773
[2025-11-21 14:44:59] 2025-11-21 19:43:52,838 | INFO     | intersect: -15434081949.01498
[2025-11-21 14:44:59] 2025-11-21 19:43:52,839 | INFO     | chi2: 0.08863971166244769
[2025-11-21 14:44:59] 2025-11-21 19:43:52,839 | INFO     | current memory leak: 8.75 B/s (using 636 data points, chi2=0.09)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,840 | INFO     | could have reported an average CPU frequency of 2380 MHz (26 samples)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,840 | INFO     | ..............................
[2025-11-21 14:44:59] 2025-11-21 19:43:52,840 | INFO     | . Timing measurements:
[2025-11-21 14:44:59] 2025-11-21 19:43:52,840 | INFO     | . get job = 0 s
[2025-11-21 14:44:59] 2025-11-21 19:43:52,840 | INFO     | . initial setup = 2 s
[2025-11-21 14:44:59] 2025-11-21 19:43:52,840 | INFO     | . payload setup = 8 s
[2025-11-21 14:44:59] 2025-11-21 19:43:52,841 | INFO     | . stage-in = 0 s
[2025-11-21 14:44:59] 2025-11-21 19:43:52,841 | INFO     | . payload execution = 40646 s
[2025-11-21 14:44:59] 2025-11-21 19:43:52,841 | INFO     | . stage-out = 3 s
[2025-11-21 14:44:59] 2025-11-21 19:43:52,841 | INFO     | . log creation = 0 s
[2025-11-21 14:44:59] 2025-11-21 19:43:52,841 | INFO     | ..............................
[2025-11-21 14:44:59] 2025-11-21 19:43:52,932 | INFO     | 
[2025-11-21 14:44:59] 2025-11-21 19:43:52,932 | INFO     | job summary report
[2025-11-21 14:44:59] 2025-11-21 19:43:52,932 | INFO     | --------------------------------------------------
[2025-11-21 14:44:59] 2025-11-21 19:43:52,932 | INFO     | PanDA job id: 6893881961
[2025-11-21 14:44:59] 2025-11-21 19:43:52,933 | INFO     | task id: 47523449
[2025-11-21 14:44:59] 2025-11-21 19:43:52,933 | INFO     | errors: (none)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,933 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 14:44:59] 2025-11-21 19:43:52,933 | INFO     | pilot state: finished 
[2025-11-21 14:44:59] 2025-11-21 19:43:52,933 | INFO     | transexitcode: 0
[2025-11-21 14:44:59] 2025-11-21 19:43:52,934 | INFO     | exeerrorcode: 0
[2025-11-21 14:44:59] 2025-11-21 19:43:52,934 | INFO     | exeerrordiag: 
[2025-11-21 14:44:59] 2025-11-21 19:43:52,934 | INFO     | exitcode: 0
[2025-11-21 14:44:59] 2025-11-21 19:43:52,934 | INFO     | exitmsg: OK
[2025-11-21 14:44:59] 2025-11-21 19:43:52,934 | INFO     | cpuconsumptiontime: 316457 s
[2025-11-21 14:44:59] 2025-11-21 19:43:52,935 | INFO     | nevents: 1000
[2025-11-21 14:44:59] 2025-11-21 19:43:52,935 | INFO     | neventsw: 0
[2025-11-21 14:44:59] 2025-11-21 19:43:52,935 | INFO     | pid: 28748
[2025-11-21 14:44:59] 2025-11-21 19:43:52,935 | INFO     | pgrp: 28748
[2025-11-21 14:44:59] 2025-11-21 19:43:52,935 | INFO     | corecount: 8
[2025-11-21 14:44:59] 2025-11-21 19:43:52,935 | INFO     | event service: False
[2025-11-21 14:44:59] 2025-11-21 19:43:52,936 | INFO     | sizes: {0: 2298585, 1: 2298784, 6: 2299046, 12: 2299074, 40659: 2342891, 40663: 2352069, 40670: 2352259}
[2025-11-21 14:44:59] 2025-11-21 19:43:52,936 | INFO     | --------------------------------------------------
[2025-11-21 14:44:59] 2025-11-21 19:43:52,936 | INFO     | 
[2025-11-21 14:44:59] 2025-11-21 19:43:52,936 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 14:44:59] 2025-11-21 19:43:52,968 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,969 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,969 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,970 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,970 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,970 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,970 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,970 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,971 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,971 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,971 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,971 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,971 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,972 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,972 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,973 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 14:44:59] 2025-11-21 19:43:52,973 | INFO     | job 6893881961 has completed (purged errors)
[2025-11-21 14:44:59] 2025-11-21 19:43:52,973 | INFO     | overall cleanup function is called
[2025-11-21 14:44:59] 2025-11-21 19:43:53,985 | INFO     | --- collectZombieJob: --- 10, [28748]
[2025-11-21 14:44:59] 2025-11-21 19:43:53,986 | INFO     | zombie collector waiting for pid 28748
[2025-11-21 14:44:59] 2025-11-21 19:43:53,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 14:44:59] 2025-11-21 19:43:53,994 | INFO     | collected zombie processes
[2025-11-21 14:44:59] 2025-11-21 19:43:53,994 | INFO     | will attempt to kill all subprocesses of pid=28748
[2025-11-21 14:44:59] 2025-11-21 19:43:54,081 | INFO     | process IDs to be killed: [28748] (in reverse order)
[2025-11-21 14:44:59] 2025-11-21 19:43:54,141 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 14:44:59] 2025-11-21 19:43:54,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 14:44:59] 2025-11-21 19:43:54,146 | INFO     | did not find any defunct processes belonging to 28748
[2025-11-21 14:44:59] 2025-11-21 19:43:54,150 | INFO     | did not find any defunct processes belonging to 28748
[2025-11-21 14:44:59] 2025-11-21 19:43:54,153 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 14:44:59] 2025-11-21 19:43:54,153 | INFO     | ready for new job
[2025-11-21 14:44:59] 2025-11-21 19:43:54,153 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 14:44:59] 2025-11-21 19:43:54,157 | INFO     | ***************************************
[2025-11-21 14:44:59] 2025-11-21 19:43:54,157 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 14:44:59] 2025-11-21 19:43:54,157 | INFO     | ***************************************
[2025-11-21 14:44:59] 2025-11-21 19:43:54,157 | INFO     | 
[2025-11-21 14:44:59] 2025-11-21 19:43:54,158 | INFO     | architecture information:
[2025-11-21 14:44:59] 2025-11-21 19:43:54,159 | INFO     | executing command: cat /etc/os-release
[2025-11-21 14:44:59] 2025-11-21 19:43:54,179 | INFO     | cat /etc/os-release:
[2025-11-21 14:44:59] NAME="CentOS Linux"
[2025-11-21 14:44:59] VERSION="7 (Core)"
[2025-11-21 14:44:59] ID="centos"
[2025-11-21 14:44:59] ID_LIKE="rhel fedora"
[2025-11-21 14:44:59] VERSION_ID="7"
[2025-11-21 14:44:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 14:44:59] ANSI_COLOR="0;31"
[2025-11-21 14:44:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 14:44:59] HOME_URL="https://www.centos.org/"
[2025-11-21 14:44:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 14:44:59] 
[2025-11-21 14:44:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 14:44:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 14:44:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 14:44:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 14:44:59] 
[2025-11-21 14:44:59] 2025-11-21 19:43:54,179 | INFO     | ***************************************
[2025-11-21 14:44:59] 2025-11-21 19:43:54,683 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 14:44:59] 2025-11-21 19:43:54,703 | INFO     | sufficient remaining disk space (17468227584 B)
[2025-11-21 14:44:59] 2025-11-21 19:43:54,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 14:44:59] 2025-11-21 19:43:54,704 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 14:44:59] 2025-11-21 19:43:54,704 | INFO     | update_server=False
[2025-11-21 14:44:59] 2025-11-21 19:43:54,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 14:44:59] 2025-11-21 19:43:54,705 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 14:44:59] 2025-11-21 19:43:54,705 | INFO     | aborting loop
[2025-11-21 14:44:59] 2025-11-21 19:43:54,706 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 14:44:59] 2025-11-21 19:43:54,975 | INFO     | all data control threads have been joined
[2025-11-21 14:44:59] 2025-11-21 19:43:55,178 | INFO     | all job control threads have been joined
[2025-11-21 14:44:59] 2025-11-21 19:43:55,708 | INFO     | [job] retrieve thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:55,708 | INFO     | [job] job monitor thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:55,711 | INFO     | [job] queue monitor thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:55,859 | INFO     | [payload] validate_post thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:55,981 | INFO     | [data] control thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:56,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 14:44:59] 2025-11-21 19:43:56,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 14:44:59] 2025-11-21 19:43:56,170 | INFO     | all payload control threads have been joined
[2025-11-21 14:44:59] 2025-11-21 19:43:56,184 | INFO     | [job] control thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:56,337 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:56,356 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:56,363 | INFO     | [job] validate thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:56,474 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:56,944 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:57,038 | INFO     | [payload] failed_post thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:57,089 | INFO     | [data] copytool_in thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:57,174 | INFO     | [payload] control thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:43:58,070 | INFO     | [data] copytool_out thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:44:00,144 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 14:44:59] 2025-11-21 19:44:24,450 | INFO     | PID=22329 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 14:44:59] 2025-11-21 19:44:24,451 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 14:44:59] 2025-11-21 19:44:24,451 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 14:44:59] 2025-11-21 19:44:24,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 14:44:59] 2025-11-21 19:44:53,060 | INFO     | [monitor] cgroup control has ended
[2025-11-21 14:44:59] 2025-11-21 19:44:54,064 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438274545472)>', '<ExcThread(monitor, started 140437679486720)>']
[2025-11-21 14:44:59] 2025-11-21 19:44:54,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 14:44:59] 2025-11-21 19:44:54,588 | INFO     | [monitor] control thread has ended
[2025-11-21 14:44:59] 2025-11-21 19:44:59,075 | INFO     | all workflow threads have been joined
[2025-11-21 14:44:59] 2025-11-21 19:44:59,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 14:44:59] 2025-11-21 19:44:59,076 | INFO     | traces error code: 0
[2025-11-21 14:44:59] 2025-11-21 19:44:59,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 14:44:59] 2025-11-21 19:44:59,205 [wrapper] ==== pilot stdout END ====
[2025-11-21 14:44:59] 2025-11-21 19:44:59,210 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 14:44:59] 2025-11-21 19:44:59,215 [wrapper] pilotpid: 22329
[2025-11-21 14:44:59] 2025-11-21 19:44:59,219 [wrapper] Pilot exit status: 0
[2025-11-21 14:44:59] 2025-11-21 19:44:59,236 [wrapper] pandaids: 6893881961
[2025-11-21 14:44:59] 2025-11-21 19:44:59,279 [wrapper] cleanup supervisor_pilot 24293 22330
[2025-11-21 14:44:59] 2025-11-21 19:44:59,284 [wrapper] Test setup, not cleaning
[2025-11-21 14:44:59] 2025-11-21 19:44:59,289 [wrapper] apfmon messages muted
[2025-11-21 14:44:59] 2025-11-21 19:44:59,293 [wrapper] ==== wrapper stdout END ====
[2025-11-21 14:44:59] 2025-11-21 19:44:59,298 [wrapper] ==== wrapper stderr END ====
[2025-11-21 14:44:59]  *** Error codes and diagnostics ***
[2025-11-21 14:44:59]     "exeErrorCode": 0,
[2025-11-21 14:44:59]     "exeErrorDiag": "",
[2025-11-21 14:44:59]     "pilotErrorCode": 0,
[2025-11-21 14:44:59]     "pilotErrorDiag": "",
[2025-11-21 14:44:59]  *** Listing of results directory ***
[2025-11-21 14:44:59] total 1325292
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 15:29 queuedata.json
[2025-11-21 14:44:59] -rwx------ 1 boincer umatlas     36292 Nov 20 15:30 runpilot2-wrapper.sh
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas       100 Nov 21 03:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 14:44:59] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 03:25 run_atlas
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas       105 Nov 21 03:25 job.xml
[2025-11-21 14:44:59] -rw-r--r-- 2 boincer umatlas 410676991 Nov 21 03:25 EVNT.47493127._000883.pool.root.1
[2025-11-21 14:44:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 03:25 start_atlas.sh
[2025-11-21 14:44:59] drwxrwx--x 2 boincer umatlas      4096 Nov 21 03:25 shared
[2025-11-21 14:44:59] -rw-r--r-- 2 boincer umatlas    590100 Nov 21 03:25 input.tar.gz
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas         0 Nov 21 03:25 boinc_lockfile
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas      2785 Nov 21 03:25 pandaJob.out
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas        57 Nov 21 03:25 setup.sh.local
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas    989817 Nov 21 03:25 agis_schedconf.cvmfs.json
[2025-11-21 14:44:59] drwx------ 5 boincer umatlas      4096 Nov 21 03:25 pilot3
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas       533 Nov 21 14:31 boinc_task_state.xml
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas      5911 Nov 21 14:38 init_data.xml
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas 927479556 Nov 21 14:43 HITS.47523449._008829.pool.root.1
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas      1064 Nov 21 14:43 memory_monitor_summary.json
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas   1526164 Nov 21 14:43 agis_ddmendpoints.agis.ALL.json
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas   1917657 Nov 21 14:43 log.47523449._008829.job.log.tgz.1
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas      8671 Nov 21 14:43 heartbeat.json
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas        95 Nov 21 14:44 pilot_heartbeat.json
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 14:44 boinc_mmap_file
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas        29 Nov 21 14:44 wrapper_checkpoint.txt
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas      4746 Nov 21 14:44 pilotlog.txt
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas   5590857 Nov 21 14:44 log.47523449._008829.job.log.1
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas       353 Nov 21 14:44 output.list
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas       620 Nov 21 14:44 runtime_log
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas   7526400 Nov 21 14:44 result.tar.gz
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas      9338 Nov 21 14:44 runtime_log.err
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas       666 Nov 21 14:44 548KDmjTQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6VIKDmVn08qn.diag
[2025-11-21 14:44:59] -rw-r--r-- 1 boincer umatlas     21394 Nov 21 14:44 stderr.txt
[2025-11-21 14:44:59] HITS file was successfully produced:
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas 927479556 Nov 21 14:43 shared/HITS.pool.root.1
[2025-11-21 14:44:59]  *** Contents of shared directory: ***
[2025-11-21 14:44:59] total 1314752
[2025-11-21 14:44:59] -rw-r--r-- 2 boincer umatlas 410676991 Nov 21 03:25 ATLAS.root_0
[2025-11-21 14:44:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 03:25 start_atlas.sh
[2025-11-21 14:44:59] -rw-r--r-- 2 boincer umatlas    590100 Nov 21 03:25 input.tar.gz
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas 927479556 Nov 21 14:43 HITS.pool.root.1
[2025-11-21 14:44:59] -rw------- 1 boincer umatlas   7526400 Nov 21 14:44 result.tar.gz
14:45:01 (18573): run_atlas exited; CPU time 314705.527432
14:45:01 (18573): called boinc_finish(0)

</stderr_txt>
]]>

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