Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:39:28 (3273208): wrapper (7.7.26015): starting
23:39:28 (3273208): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 23:39:28] Arguments: --nthreads 12
[2025-11-20 23:39:28] Threads: 12
[2025-11-20 23:39:28] Checking for CVMFS
[2025-11-20 23:39:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:39:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:39:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:39:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:39:29] 2.11.5.0 3883901 20577 313568 153113 1 233 45235012 45568000 18011 130560 0 203850323 99.806 117267247 21905 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 23:39:29] CVMFS is ok
[2025-11-20 23:39:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:39:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:39:29] Further information can be found at the LHC@home message board.
[2025-11-20 23:39:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:39:29] Checking for apptainer binary...
[2025-11-20 23:39:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:39:29] Running /usr/bin/apptainer --version
[2025-11-20 23:39:29] apptainer version 1.4.1-1.el9
[2025-11-20 23:39:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:39:29] wns0028.triumf.lcg
[2025-11-20 23:39:29] apptainer works
[2025-11-20 23:39:29] Set ATHENA_PROC_NUMBER=12
[2025-11-20 23:39:29] Set ATHENA_CORE_NUMBER=12
[2025-11-20 23:39:30] Starting ATLAS job with PandaID=6894252242
[2025-11-20 23:39:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:45:04]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:45:04] 2025-11-21 07:44:29,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 23:45:04] 2025-11-21 07:44:29,170 | WARNING  | wrong length of table data, x=[1763710854.0, 1763710915.0], y=[1172.0, 467448.0] (must be same and length>=4)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | could have reported an average CPU frequency of 2670 MHz (4 samples)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | ..............................
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . Timing measurements:
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . get job = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . initial setup = 3 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . payload setup = 10 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . stage-in = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . payload execution = 95 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . stage-out = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . log creation = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | ..............................
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 23:45:04] 2025-11-21 07:44:29,181 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894252242/pilotlog.txt
[2025-11-20 23:45:04] 2025-11-21 07:44:29,213 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 23:45:04] - Log from pilotlog.txt -
[2025-11-20 23:45:04] 2025-11-21 07:44:29,169 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894252242/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,169 | INFO     | extracted standard info from prmon json
[2025-11-20 23:45:04] 2025-11-21 07:44:29,169 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:45:04] 2025-11-21 07:44:29,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:45:04] 2025-11-21 07:44:29,170 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 23:45:04] 2025-11-21 07:44:29,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 23:45:04] 2025-11-21 07:44:29,170 | WARNING  | wrong length of table data, x=[1763710854.0, 1763710915.0], y=[1172.0, 467448.0] (must be same and length>=4)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | could have reported an average CPU frequency of 2670 MHz (4 samples)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | ..............................
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . Timing measurements:
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . get job = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . initial setup = 3 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . payload setup = 10 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . stage-in = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . payload execution = 95 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . stage-out = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . log creation = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | ..............................
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 23:45:04] 2025-11-21 07:44:29,181 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894252242/pilotlog.txt
[2025-11-20 23:45:04] 2025-11-21 07:44:29,218 | WARNING  | 
[2025-11-20 23:45:04] [begin log extracts]
[2025-11-20 23:45:04] - Log from pilotlog.txt -
[2025-11-20 23:45:04] 2025-11-21 07:44:29,169 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894252242/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,169 | INFO     | extracted standard info from prmon json
[2025-11-20 23:45:04] 2025-11-21 07:44:29,169 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:45:04] 2025-11-21 07:44:29,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:45:04] 2025-11-21 07:44:29,170 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 23:45:04] 2025-11-21 07:44:29,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 23:45:04] 2025-11-21 07:44:29,170 | WARNING  | wrong length of table data, x=[1763710854.0, 1763710915.0], y=[1172.0, 467448.0] (must be same and length>=4)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | could have reported an average CPU frequency of 2670 MHz (4 samples)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | ..............................
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . Timing measurements:
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . get job = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . initial setup = 3 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . payload setup = 10 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . stage-in = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . payload execution = 95 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . stage-out = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | . log creation = 0 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | ..............................
[2025-11-20 23:45:04] 2025-11-21 07:44:29,171 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 23:45:04] 2025-11-21 07:44:29,181 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894252242/pilotlog.txt
[2025-11-20 23:45:04] [end log extracts]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,218 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,218 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 23:45:04] 2025-11-21 07:44:29,393 | INFO     | 
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | job summary report
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | --------------------------------------------------
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | PanDA job id: 6894252242
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | task id: 47533967
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 23:42:10,689 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | pilot state: failed 
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | transexitcode: 65
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | exeerrorcode: 65
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | exitcode: 65
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | cpuconsumptiontime: 42 s
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | nevents: 0
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | neventsw: 0
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | pid: 3284156
[2025-11-20 23:45:04] 2025-11-21 07:44:29,394 | INFO     | pgrp: 3284156
[2025-11-20 23:45:04] 2025-11-21 07:44:29,395 | INFO     | corecount: 12
[2025-11-20 23:45:04] 2025-11-21 07:44:29,395 | INFO     | event service: False
[2025-11-20 23:45:04] 2025-11-21 07:44:29,395 | INFO     | sizes: {0: 2297977, 1: 2298830, 12: 2298830, 16: 2299120, 23: 2299148, 110: 2324700, 112: 2329046, 240: 2329184}
[2025-11-20 23:45:04] 2025-11-21 07:44:29,395 | INFO     | --------------------------------------------------
[2025-11-20 23:45:04] 2025-11-21 07:44:29,395 | INFO     | 
[2025-11-20 23:45:04] 2025-11-21 07:44:29,395 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 23:45:04] 2025-11-21 07:44:29,427 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,429 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,429 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,429 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:45:04] 2025-11-21 07:44:29,429 | INFO     | job 6894252242 has completed (purged errors)
[2025-11-20 23:45:04] 2025-11-21 07:44:29,429 | INFO     | overall cleanup function is called
[2025-11-20 23:45:04] 2025-11-21 07:44:30,438 | INFO     | --- collectZombieJob: --- 10, [3284156]
[2025-11-20 23:45:04] 2025-11-21 07:44:30,438 | INFO     | zombie collector waiting for pid 3284156
[2025-11-20 23:45:04] 2025-11-21 07:44:30,438 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:45:04] 2025-11-21 07:44:30,438 | INFO     | collected zombie processes
[2025-11-20 23:45:04] 2025-11-21 07:44:30,438 | INFO     | will attempt to kill all subprocesses of pid=3284156
[2025-11-20 23:45:04] 2025-11-21 07:44:31,196 | INFO     | process IDs to be killed: [3284156] (in reverse order)
[2025-11-20 23:45:04] 2025-11-21 07:44:31,273 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:45:04] 2025-11-21 07:44:31,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:45:04] 2025-11-21 07:44:31,325 | INFO     | did not find any defunct processes belonging to 3284156
[2025-11-20 23:45:04] 2025-11-21 07:44:31,372 | INFO     | did not find any defunct processes belonging to 3284156
[2025-11-20 23:45:04] 2025-11-21 07:44:31,373 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:45:04] 2025-11-21 07:44:31,373 | INFO     | ready for new job
[2025-11-20 23:45:04] 2025-11-21 07:44:31,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:45:04] 2025-11-21 07:44:31,397 | INFO     | ***************************************
[2025-11-20 23:45:04] 2025-11-21 07:44:31,397 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:45:04] 2025-11-21 07:44:31,397 | INFO     | ***************************************
[2025-11-20 23:45:04] 2025-11-21 07:44:31,397 | INFO     | 
[2025-11-20 23:45:04] 2025-11-21 07:44:31,399 | INFO     | architecture information:
[2025-11-20 23:45:04] 2025-11-21 07:44:31,432 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:45:04] 2025-11-21 07:44:31,459 | INFO     | cat /etc/os-release:
[2025-11-20 23:45:04] NAME="CentOS Linux"
[2025-11-20 23:45:04] VERSION="7 (Core)"
[2025-11-20 23:45:04] ID="centos"
[2025-11-20 23:45:04] ID_LIKE="rhel fedora"
[2025-11-20 23:45:04] VERSION_ID="7"
[2025-11-20 23:45:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:45:04] ANSI_COLOR="0;31"
[2025-11-20 23:45:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:45:04] HOME_URL="https://www.centos.org/"
[2025-11-20 23:45:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:45:04] 
[2025-11-20 23:45:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:45:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:45:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:45:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:45:04] 
[2025-11-20 23:45:04] 2025-11-21 07:44:31,459 | INFO     | ***************************************
[2025-11-20 23:45:04] 2025-11-21 07:44:31,963 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 23:45:04] 2025-11-21 07:44:32,023 | INFO     | sufficient remaining disk space (2085750833152 B)
[2025-11-20 23:45:04] 2025-11-21 07:44:32,023 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:45:04] 2025-11-21 07:44:32,023 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:45:04] 2025-11-21 07:44:32,023 | INFO     | update_server=False
[2025-11-20 23:45:04] 2025-11-21 07:44:32,023 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:45:04] 2025-11-21 07:44:32,041 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:45:04] 2025-11-21 07:44:32,251 | INFO     | all data control threads have been joined
[2025-11-20 23:45:04] 2025-11-21 07:44:32,309 | INFO     | all job control threads have been joined
[2025-11-20 23:45:04] 2025-11-21 07:44:32,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:45:04] 2025-11-21 07:44:32,550 | INFO     | aborting loop
[2025-11-20 23:45:04] 2025-11-21 07:44:33,030 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,257 | INFO     | [data] control thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,314 | INFO     | [job] validate thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,319 | INFO     | [job] control thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,387 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,494 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,519 | INFO     | all payload control threads have been joined
[2025-11-20 23:45:04] 2025-11-21 07:44:33,525 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,556 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,600 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:33,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:45:04] 2025-11-21 07:44:33,891 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:34,048 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:34,080 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:34,203 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:34,408 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:45:04] 2025-11-21 07:44:34,526 | INFO     | [payload] control thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:35,414 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:37,681 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:45:04] 2025-11-21 07:44:59,288 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:45:04] 2025-11-21 07:44:59,584 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140282063931200)>', '<ExcThread(monitor, started 140281500374784)>']
[2025-11-20 23:45:04] 2025-11-21 07:45:01,321 | INFO     | PID=3276997 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:45:04] 2025-11-21 07:45:01,321 | INFO     | .. there are 33 such processes running
[2025-11-20 23:45:04] 2025-11-21 07:45:01,367 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:45:04] 2025-11-21 07:45:01,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:45:04] 2025-11-21 07:45:01,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:45:04] 2025-11-21 07:45:01,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:45:04] 2025-11-21 07:45:01,367 | INFO     | [monitor] control thread has ended
[2025-11-20 23:45:04] 2025-11-21 07:45:04,610 | INFO     | all workflow threads have been joined
[2025-11-20 23:45:04] 2025-11-21 07:45:04,610 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:45:04] 2025-11-21 07:45:04,610 | INFO     | traces error code: 0
[2025-11-20 23:45:04] 2025-11-21 07:45:04,610 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:45:04] 2025-11-21 07:45:04,816 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:45:04] 2025-11-21 07:45:04,818 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:45:04] 2025-11-21 07:45:04,820 [wrapper] pilotpid: 3276997
[2025-11-20 23:45:04] 2025-11-21 07:45:04,822 [wrapper] Pilot exit status: 0
[2025-11-20 23:45:04] 2025-11-21 07:45:04,831 [wrapper] pandaids: 6894252242
[2025-11-20 23:45:04] 2025-11-21 07:45:04,879 [wrapper] cleanup supervisor_pilot 3277003 3276998
[2025-11-20 23:45:04] 2025-11-21 07:45:04,881 [wrapper] Test setup, not cleaning
[2025-11-20 23:45:04] 2025-11-21 07:45:04,884 [wrapper] apfmon messages muted
[2025-11-20 23:45:04] 2025-11-21 07:45:04,886 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:45:04] 2025-11-21 07:45:04,888 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:45:04]  *** Error codes and diagnostics ***
[2025-11-20 23:45:04]     "exeErrorCode": 65,
[2025-11-20 23:45:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 23:45:04]     "pilotErrorCode": 1305,
[2025-11-20 23:45:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 23:45:04]  *** Listing of results directory ***
[2025-11-20 23:45:04] total 403232
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc    576529 Nov 20 17:54 pilot3.tar.gz
[2025-11-20 23:45:04] -rwx------. 1 boinc boinc     36292 Nov 20 17:57 runpilot2-wrapper.sh
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc      5112 Nov 20 17:57 queuedata.json
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc       100 Nov 20 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:45:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 23:39 run_atlas
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc       105 Nov 20 23:39 job.xml
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc      6594 Nov 20 23:39 init_data.xml
[2025-11-20 23:45:04] -rw-r--r--. 2 boinc boinc 408689612 Nov 20 23:39 EVNT.47493127._002107.pool.root.1
[2025-11-20 23:45:04] -rw-r--r--. 2 boinc boinc     15847 Nov 20 23:39 start_atlas.sh
[2025-11-20 23:45:04] drwxrwx--x. 2 boinc boinc      4096 Nov 20 23:39 shared
[2025-11-20 23:45:04] -rw-r--r--. 2 boinc boinc    590102 Nov 20 23:39 input.tar.gz
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc         0 Nov 20 23:39 boinc_lockfile
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc      2785 Nov 20 23:39 pandaJob.out
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc    989817 Nov 20 23:39 agis_schedconf.cvmfs.json
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc   1526164 Nov 20 23:39 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:45:04] drwx------. 5 boinc boinc      4096 Nov 20 23:39 pilot3
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc       524 Nov 20 23:41 boinc_task_state.xml
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc       993 Nov 20 23:42 memory_monitor_summary.json
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc     48856 Nov 20 23:42 log.47533967._000789.job.log.tgz.1
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc     10337 Nov 20 23:44 heartbeat.json
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc        95 Nov 20 23:45 pilot_heartbeat.json
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc      8192 Nov 20 23:45 boinc_mmap_file
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc      4823 Nov 20 23:45 pilotlog.txt
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc        23 Nov 20 23:45 wrapper_checkpoint.txt
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc     99773 Nov 20 23:45 log.47533967._000789.job.log.1
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc       186 Nov 20 23:45 output.list
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc       620 Nov 20 23:45 runtime_log
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc    174080 Nov 20 23:45 result.tar.gz
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc       645 Nov 20 23:45 sbQNDmcZVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4qIKDmQy5Xam.diag
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc      8636 Nov 20 23:45 runtime_log.err
[2025-11-20 23:45:04] -rw-r--r--. 1 boinc boinc     22484 Nov 20 23:45 stderr.txt
[2025-11-20 23:45:04] No HITS result produced
[2025-11-20 23:45:04]  *** Contents of shared directory: ***
[2025-11-20 23:45:04] total 399884
[2025-11-20 23:45:04] -rw-r--r--. 2 boinc boinc 408689612 Nov 20 23:39 ATLAS.root_0
[2025-11-20 23:45:04] -rw-r--r--. 2 boinc boinc     15847 Nov 20 23:39 start_atlas.sh
[2025-11-20 23:45:04] -rw-r--r--. 2 boinc boinc    590102 Nov 20 23:39 input.tar.gz
[2025-11-20 23:45:04] -rw-------. 1 boinc boinc    174080 Nov 20 23:45 result.tar.gz
23:45:06 (3273208): run_atlas exited; CPU time 44.822117
23:45:06 (3273208): called boinc_finish(0)

</stderr_txt>
]]>

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